RNA–Protein interactions for RNA: ENST00000318024.8

USH1C-202, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USH1C, Length 2,237 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-202ENST00000318024 DDR1Q08345 913 aa18.69■□□□□ 0.58
USH1C-202ENST00000318024 PDCL2Q8N4E4 241 aa18.69■□□□□ 0.58
USH1C-202ENST00000318024 ZHX1Q9UKY1 873 aaPredicted RBP18.69■□□□□ 0.58
USH1C-202ENST00000318024 DTNBO60941 627 aa18.68■□□□□ 0.58
USH1C-202ENST00000318024 SLC5A1P13866 664 aa18.68■□□□□ 0.58
USH1C-202ENST00000318024 BCAMP50895 628 aa18.68■□□□□ 0.58
USH1C-202ENST00000318024 TPRNQ4KMQ1 711 aa18.68■□□□□ 0.58
USH1C-202ENST00000318024 SPC24Q8NBT2 197 aa18.68■□□□□ 0.58
USH1C-202ENST00000318024 GOLGA6L6A8MZA4 724 aa18.68■□□□□ 0.58
USH1C-202ENST00000318024 LIG1P18858 919 aa18.68■□□□□ 0.58
USH1C-202ENST00000318024 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.68■□□□□ 0.58
USH1C-202ENST00000318024 PLCB2Q00722 1185 aa18.67■□□□□ 0.58
USH1C-202ENST00000318024 JAKMIP1Q96N16 626 aaKnown RBP18.67■□□□□ 0.58
USH1C-202ENST00000318024 PTGS1P23219 599 aa18.66■□□□□ 0.58
USH1C-202ENST00000318024 TYRO3Q06418 890 aa18.66■□□□□ 0.58
USH1C-202ENST00000318024 SYCP1Q15431 976 aa18.66■□□□□ 0.58
USH1C-202ENST00000318024 IQSEC3Q9UPP2 1182 aaPredicted RBP18.66■□□□□ 0.58
USH1C-202ENST00000318024 LRP5O75197 1615 aa18.66■□□□□ 0.58
USH1C-202ENST00000318024 POLRMTO00411 1230 aaKnown RBP18.66■□□□□ 0.58
USH1C-202ENST00000318024 MSL1Q68DK7 614 aa18.66■□□□□ 0.58
USH1C-202ENST00000318024 PRPF40BQ6NWY9 871 aaKnown RBP18.66■□□□□ 0.58
USH1C-202ENST00000318024 CYP46A1Q9Y6A2 500 aa18.66■□□□□ 0.58
USH1C-202ENST00000318024 LAMB2P55268 1798 aa18.65■□□□□ 0.58
USH1C-202ENST00000318024 COL24A1Q17RW2 1714 aa18.65■□□□□ 0.58
USH1C-202ENST00000318024 PDIA4P13667 645 aaKnown RBP18.65■□□□□ 0.58
USH1C-202ENST00000318024 KCNJ4P48050 445 aa18.65■□□□□ 0.58
USH1C-202ENST00000318024 COL9A3Q14050 684 aaPredicted RBP18.65■□□□□ 0.58
USH1C-202ENST00000318024 MAP3K11Q16584 847 aa18.65■□□□□ 0.58
USH1C-202ENST00000318024 TPCN1Q9ULQ1 816 aa18.65■□□□□ 0.58
USH1C-202ENST00000318024 SPEF2Q9C093 1822 aa18.65■□□□□ 0.58
USH1C-202ENST00000318024 ST5P78524 1137 aa18.65■□□□□ 0.58
USH1C-202ENST00000318024 MCMDC2Q4G0Z9 681 aa18.65■□□□□ 0.58
USH1C-202ENST00000318024 PLA2G4DQ86XP0 818 aa18.65■□□□□ 0.58
USH1C-202ENST00000318024 GYG1P46976 350 aa18.64■□□□□ 0.57
USH1C-202ENST00000318024 NCBP1Q09161 790 aaKnown RBP18.64■□□□□ 0.57
USH1C-202ENST00000318024 CHAF1AQ13111 956 aaPredicted RBP18.64■□□□□ 0.57
USH1C-202ENST00000318024 CDC37L1Q7L3B6 337 aa18.64■□□□□ 0.57
USH1C-202ENST00000318024 LUZP1Q86V48 1076 aa18.64■□□□□ 0.57
USH1C-202ENST00000318024 NECAB1Q8N987 351 aa18.64■□□□□ 0.57
USH1C-202ENST00000318024 NUP62CLQ9H1M0 184 aa18.64■□□□□ 0.57
USH1C-202ENST00000318024 CBX8Q9HC52 389 aa18.64■□□□□ 0.57
USH1C-202ENST00000318024 VPS37CA5D8V6 355 aaPredicted RBP18.64■□□□□ 0.57
USH1C-202ENST00000318024 RNF113AO15541 343 aaKnown RBP18.64■□□□□ 0.57
USH1C-202ENST00000318024 KIF20AO95235 890 aa18.64■□□□□ 0.57
USH1C-202ENST00000318024 U2AF2P26368 475 aaKnown RBP eCLIP18.64■□□□□ 0.57
USH1C-202ENST00000318024 KRT85P78386 507 aa18.64■□□□□ 0.57
USH1C-202ENST00000318024 RASGRF1Q13972 1273 aa18.64■□□□□ 0.57
USH1C-202ENST00000318024 MAP4K1Q92918 833 aa18.64■□□□□ 0.57
USH1C-202ENST00000318024 HMG20BQ9P0W2 317 aa18.64■□□□□ 0.57
USH1C-202ENST00000318024 RBM8AQ9Y5S9 174 aaKnown RBP18.64■□□□□ 0.57
USH1C-202ENST00000318024 MED23Q9ULK4 1368 aa18.63■□□□□ 0.57
USH1C-202ENST00000318024 PNPLA7Q6ZV29 1317 aa18.63■□□□□ 0.57
USH1C-202ENST00000318024 ARID4AP29374 1257 aaPredicted RBP18.63■□□□□ 0.57
USH1C-202ENST00000318024 TDRD7Q8NHU6 1098 aaKnown RBP18.63■□□□□ 0.57
USH1C-202ENST00000318024 CAMKK2Q96RR4 588 aa18.63■□□□□ 0.57
USH1C-202ENST00000318024 PIH1D3Q9NQM4 214 aaKnown RBP18.63■□□□□ 0.57
USH1C-202ENST00000318024 HMGB2P26583 209 aaKnown RBP18.62■□□□□ 0.57
USH1C-202ENST00000318024 KLRK1P26718 216 aa18.62■□□□□ 0.57
USH1C-202ENST00000318024 WASHC4Q2M389 1173 aa18.62■□□□□ 0.57
USH1C-202ENST00000318024 CCDC186Q7Z3E2 898 aa18.62■□□□□ 0.57
USH1C-202ENST00000318024 DEFB132Q7Z7B7 95 aa18.62■□□□□ 0.57
USH1C-202ENST00000318024 ZNF512BQ96KM6 892 aaPredicted RBP18.62■□□□□ 0.57
USH1C-202ENST00000318024 IDH1O75874 414 aaKnown RBP18.62■□□□□ 0.57
USH1C-202ENST00000318024 UQCRFS1P1P0C7P4 283 aa18.62■□□□□ 0.57
USH1C-202ENST00000318024 LRMPQ12912 555 aa18.62■□□□□ 0.57
USH1C-202ENST00000318024 CREB3L3Q68CJ9 461 aa18.62■□□□□ 0.57
USH1C-202ENST00000318024 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.62■□□□□ 0.57
USH1C-202ENST00000318024 NLGN1Q8N2Q7 840 aa18.62■□□□□ 0.57
USH1C-202ENST00000318024 SPATA5Q8NB90 893 aa18.62■□□□□ 0.57
USH1C-202ENST00000318024 RPGRQ92834 1020 aaKnown RBP18.62■□□□□ 0.57
USH1C-202ENST00000318024 OSBP2Q969R2 916 aa18.62■□□□□ 0.57
USH1C-202ENST00000318024 FEZ1Q99689 392 aa18.62■□□□□ 0.57
USH1C-202ENST00000318024 ALDH8A1Q9H2A2 487 aaPredicted RBP18.62■□□□□ 0.57
USH1C-202ENST00000318024 TNRC6CQ9HCJ0 1690 aaKnown RBP18.62■□□□□ 0.57
USH1C-202ENST00000318024 SPDYE4A6NLX3 237 aa18.61■□□□□ 0.57
USH1C-202ENST00000318024 ZNF75DP51815 510 aa18.61■□□□□ 0.57
USH1C-202ENST00000318024 ZMYM1Q5SVZ6 1142 aa18.61■□□□□ 0.57
USH1C-202ENST00000318024 LARP1BQ659C4 914 aaKnown RBP18.61■□□□□ 0.57
USH1C-202ENST00000318024 FAM173BQ6P4H8 233 aa18.61■□□□□ 0.57
USH1C-202ENST00000318024 M0R2C6 588 aa18.61■□□□□ 0.57
USH1C-202ENST00000318024 GRAPQ13588 217 aa18.61■□□□□ 0.57
USH1C-202ENST00000318024 GRAPLQ8TC17 118 aaPredicted RBP18.61■□□□□ 0.57
USH1C-202ENST00000318024 NRBP1Q9UHY1 535 aa18.61■□□□□ 0.57
USH1C-202ENST00000318024 TAF6LQ9Y6J9 622 aa18.61■□□□□ 0.57
USH1C-202ENST00000318024 SMTNL1A8MU46 457 aa18.6■□□□□ 0.57
USH1C-202ENST00000318024 MMP10P09238 476 aa18.6■□□□□ 0.57
USH1C-202ENST00000318024 UBE4AQ14139 1066 aa18.6■□□□□ 0.57
USH1C-202ENST00000318024 ANO6Q4KMQ2 910 aa18.6■□□□□ 0.57
USH1C-202ENST00000318024 ZSCAN25Q6NSZ9 544 aa18.6■□□□□ 0.57
USH1C-202ENST00000318024 CLSTN2Q9H4D0 955 aa18.6■□□□□ 0.57
USH1C-202ENST00000318024 DACT1Q9NYF0 836 aa18.6■□□□□ 0.57
USH1C-202ENST00000318024 RFX7Q2KHR2 1363 aa18.6■□□□□ 0.57
USH1C-202ENST00000318024 CAMK4Q16566 473 aa18.59■□□□□ 0.57
USH1C-202ENST00000318024 SLC9C2Q5TAH2 1124 aa18.59■□□□□ 0.57
USH1C-202ENST00000318024 PUS7LQ9H0K6 701 aaKnown RBP18.59■□□□□ 0.57
USH1C-202ENST00000318024 HELLSQ9NRZ9 838 aa18.59■□□□□ 0.57
USH1C-202ENST00000318024 DDX19AQ9NUU7 478 aaKnown RBP18.59■□□□□ 0.57
USH1C-202ENST00000318024 CTNNA3Q9UI47 895 aa18.59■□□□□ 0.57
USH1C-202ENST00000318024 MAST3O60307 1309 aa18.59■□□□□ 0.57
USH1C-202ENST00000318024 VPS37DQ86XT2 251 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms