RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 ANO1Q5XXA6 986 aa12.15□□□□□ -0.46
COL3A1-202ENST00000317840 PI16Q6UXB8 463 aa12.15□□□□□ -0.46
COL3A1-202ENST00000317840 SYNE4Q8N205 404 aa12.15□□□□□ -0.46
COL3A1-202ENST00000317840 ANKRD7Q92527 254 aa12.15□□□□□ -0.46
COL3A1-202ENST00000317840 MTMR7Q9Y216 660 aa12.15□□□□□ -0.46
COL3A1-202ENST00000317840 COL15A1P39059 1388 aa12.15□□□□□ -0.46
COL3A1-202ENST00000317840 TOP1P11387 765 aaKnown RBP12.15□□□□□ -0.46
COL3A1-202ENST00000317840 ADORA1P30542 326 aa12.15□□□□□ -0.46
COL3A1-202ENST00000317840 SARM1Q6SZW1 724 aa12.15□□□□□ -0.46
COL3A1-202ENST00000317840 LINC00301Q8NCQ3 95 aa12.15□□□□□ -0.46
COL3A1-202ENST00000317840 CNNM3Q8NE01 707 aa12.15□□□□□ -0.46
COL3A1-202ENST00000317840 XAGE2Q96GT9 111 aa12.15□□□□□ -0.46
COL3A1-202ENST00000317840 PRDM4Q9UKN5 801 aa12.15□□□□□ -0.46
COL3A1-202ENST00000317840 SLIT1O75093 1534 aa12.15□□□□□ -0.47
COL3A1-202ENST00000317840 ZAP70P43403 619 aa12.14□□□□□ -0.47
COL3A1-202ENST00000317840 SLC9C2Q5TAH2 1124 aa12.14□□□□□ -0.47
COL3A1-202ENST00000317840 DHX40Q8IX18 779 aaKnown RBP12.14□□□□□ -0.47
COL3A1-202ENST00000317840 FBXO18Q8NFZ0 1043 aa12.14□□□□□ -0.47
COL3A1-202ENST00000317840 PIGBQ92521 554 aa12.14□□□□□ -0.47
COL3A1-202ENST00000317840 PHKBQ93100 1093 aa12.14□□□□□ -0.47
COL3A1-202ENST00000317840 CARD10Q9BWT7 1032 aa12.14□□□□□ -0.47
COL3A1-202ENST00000317840 ARGLU1Q9NWB6 273 aaPredicted RBP12.14□□□□□ -0.47
COL3A1-202ENST00000317840 NCAPD2Q15021 1401 aa12.14□□□□□ -0.47
COL3A1-202ENST00000317840 ADD1P35611 737 aaKnown RBP12.14□□□□□ -0.47
COL3A1-202ENST00000317840 ERO1AQ96HE7 468 aa12.14□□□□□ -0.47
COL3A1-202ENST00000317840 RGPD8O14715 1765 aaPredicted RBP12.14□□□□□ -0.47
COL3A1-202ENST00000317840 GPAA1O43292 621 aa12.14□□□□□ -0.47
COL3A1-202ENST00000317840 CDKL5O76039 1030 aa12.14□□□□□ -0.47
COL3A1-202ENST00000317840 ERCC6LQ2NKX8 1250 aa12.14□□□□□ -0.47
COL3A1-202ENST00000317840 SMIM5Q71RC9 77 aa12.14□□□□□ -0.47
COL3A1-202ENST00000317840 RTEL1Q9NZ71 1219 aa12.14□□□□□ -0.47
COL3A1-202ENST00000317840 ZFYP08048 801 aaPredicted RBP12.13□□□□□ -0.47
COL3A1-202ENST00000317840 PFKFB1P16118 471 aa12.13□□□□□ -0.47
COL3A1-202ENST00000317840 IARSP41252 1262 aaKnown RBP12.13□□□□□ -0.47
COL3A1-202ENST00000317840 FANCCQ00597 558 aa12.13□□□□□ -0.47
COL3A1-202ENST00000317840 RABL6Q3YEC7 729 aaPredicted RBP12.13□□□□□ -0.47
COL3A1-202ENST00000317840 SPECC1Q5M775 1068 aa12.13□□□□□ -0.47
COL3A1-202ENST00000317840 BRAPQ7Z569 592 aa12.13□□□□□ -0.47
COL3A1-202ENST00000317840 AIFM3Q96NN9 605 aa12.13□□□□□ -0.47
COL3A1-202ENST00000317840 HOOK1Q9UJC3 728 aaKnown RBP12.13□□□□□ -0.47
COL3A1-202ENST00000317840 ANKRD18BA2A2Z9 1011 aa12.13□□□□□ -0.47
COL3A1-202ENST00000317840 CBFA2T2O43439 604 aa12.13□□□□□ -0.47
COL3A1-202ENST00000317840 FMR1NBQ8N0W7 255 aaPredicted RBP12.13□□□□□ -0.47
COL3A1-202ENST00000317840 AIDAQ96BJ3 306 aa12.13□□□□□ -0.47
COL3A1-202ENST00000317840 MYL10Q9BUA6 226 aa12.13□□□□□ -0.47
COL3A1-202ENST00000317840 UTP14AQ9BVJ6 771 aaKnown RBP12.13□□□□□ -0.47
COL3A1-202ENST00000317840 NIP7Q9Y221 180 aaKnown RBP eCLIP12.13□□□□□ -0.47
COL3A1-202ENST00000317840 FMN2Q9NZ56 1722 aa12.13□□□□□ -0.47
COL3A1-202ENST00000317840 EXOSC10Q01780 885 aaKnown RBP12.13□□□□□ -0.47
COL3A1-202ENST00000317840 NUP133Q8WUM0 1156 aa12.13□□□□□ -0.47
COL3A1-202ENST00000317840 TEX13AQ9BXU3 409 aaPredicted RBP12.13□□□□□ -0.47
COL3A1-202ENST00000317840 GOLGA8AA7E2F4 631 aa12.12□□□□□ -0.47
COL3A1-202ENST00000317840 IRS4O14654 1257 aaPredicted RBP12.12□□□□□ -0.47
COL3A1-202ENST00000317840 ARHGAP29Q52LW3 1261 aa12.12□□□□□ -0.47
COL3A1-202ENST00000317840 SLC26A6Q9BXS9 759 aa12.12□□□□□ -0.47
COL3A1-202ENST00000317840 NWD1Q149M9 1564 aa12.12□□□□□ -0.47
COL3A1-202ENST00000317840 YEATS4O95619 227 aa12.12□□□□□ -0.47
COL3A1-202ENST00000317840 ATP1A3P13637 1013 aa12.12□□□□□ -0.47
COL3A1-202ENST00000317840 CCDC102BQ68D86 513 aa12.12□□□□□ -0.47
COL3A1-202ENST00000317840 ATG9AQ7Z3C6 839 aa12.12□□□□□ -0.47
COL3A1-202ENST00000317840 ZBTB1Q9Y2K1 713 aa12.12□□□□□ -0.47
COL3A1-202ENST00000317840 B4E1Z4 1266 aa12.12□□□□□ -0.47
COL3A1-202ENST00000317840 ERVV-2B6SEH9 535 aa12.12□□□□□ -0.47
COL3A1-202ENST00000317840 CCP110O43303 1012 aa12.12□□□□□ -0.47
COL3A1-202ENST00000317840 UTP14CQ5TAP6 766 aaKnown RBP12.12□□□□□ -0.47
COL3A1-202ENST00000317840 CCDC191Q8NCU4 936 aa12.12□□□□□ -0.47
COL3A1-202ENST00000317840 APPBP2Q92624 585 aa12.12□□□□□ -0.47
COL3A1-202ENST00000317840 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.12□□□□□ -0.47
COL3A1-202ENST00000317840 IFIT3O14879 490 aaKnown RBP12.12□□□□□ -0.47
COL3A1-202ENST00000317840 KIF20AO95235 890 aa12.12□□□□□ -0.47
COL3A1-202ENST00000317840 FDPSP14324 419 aaKnown RBP12.12□□□□□ -0.47
COL3A1-202ENST00000317840 NLRP12P59046 1061 aa12.12□□□□□ -0.47
COL3A1-202ENST00000317840 AKAP17AQ02040 695 aaKnown RBP12.12□□□□□ -0.47
COL3A1-202ENST00000317840 TMEM67Q5HYA8 995 aa12.12□□□□□ -0.47
COL3A1-202ENST00000317840 ENGASEQ8NFI3 743 aa12.12□□□□□ -0.47
COL3A1-202ENST00000317840 PUS7LQ9H0K6 701 aaKnown RBP12.12□□□□□ -0.47
COL3A1-202ENST00000317840 A0A1W2PQ27 194 aa12.11□□□□□ -0.47
COL3A1-202ENST00000317840 A0A1W2PQ64 194 aa12.11□□□□□ -0.47
COL3A1-202ENST00000317840 A0A1W2PQD8 194 aa12.11□□□□□ -0.47
COL3A1-202ENST00000317840 ZBTB43O43298 467 aa12.11□□□□□ -0.47
COL3A1-202ENST00000317840 CCZ1BP86790 482 aa12.11□□□□□ -0.47
COL3A1-202ENST00000317840 CCZ1P86791 482 aaPredicted RBP12.11□□□□□ -0.47
COL3A1-202ENST00000317840 GOLGA8FQ08AF8 430 aa12.11□□□□□ -0.47
COL3A1-202ENST00000317840 GOLGA8DPQ0D2H9 430 aa12.11□□□□□ -0.47
COL3A1-202ENST00000317840 PNOCQ13519 176 aa12.11□□□□□ -0.47
COL3A1-202ENST00000317840 TMCO3Q6UWJ1 677 aa12.11□□□□□ -0.47
COL3A1-202ENST00000317840 IMPACTQ9P2X3 320 aa12.11□□□□□ -0.47
COL3A1-202ENST00000317840 SLC12A7Q9Y666 1083 aa12.11□□□□□ -0.47
COL3A1-202ENST00000317840 NALCNQ8IZF0 1738 aa12.11□□□□□ -0.47
COL3A1-202ENST00000317840 ERICH2A1L162 156 aa12.11□□□□□ -0.47
COL3A1-202ENST00000317840 NBPF26B4DH59 902 aa12.11□□□□□ -0.47
COL3A1-202ENST00000317840 FOXO4P98177 505 aa12.11□□□□□ -0.47
COL3A1-202ENST00000317840 SLC4A8Q2Y0W8 1093 aa12.11□□□□□ -0.47
COL3A1-202ENST00000317840 NBPF14Q5TI25 921 aa12.11□□□□□ -0.47
COL3A1-202ENST00000317840 KLHL10Q6JEL2 608 aa12.11□□□□□ -0.47
COL3A1-202ENST00000317840 NBPF10Q6P3W6 841 aaKnown RBP12.11□□□□□ -0.47
COL3A1-202ENST00000317840 FBXO38Q6PIJ6 1188 aa12.11□□□□□ -0.47
COL3A1-202ENST00000317840 NBPF15Q8N660 670 aa12.11□□□□□ -0.47
COL3A1-202ENST00000317840 CCDC34Q96HJ3 373 aa12.11□□□□□ -0.47
COL3A1-202ENST00000317840 CLIC6Q96NY7 704 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms