RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 NECTIN1Q15223 517 aa7.64□□□□□ -1.19
ZNF540-201ENST00000316433 MTHFSDQ2M296 383 aaKnown RBP7.64□□□□□ -1.19
ZNF540-201ENST00000316433 CCDC144BQ3MJ40 725 aa7.64□□□□□ -1.19
ZNF540-201ENST00000316433 BEND3Q5T5X7 828 aa7.64□□□□□ -1.19
ZNF540-201ENST00000316433 NUTM2GQ5VZR2 741 aa7.64□□□□□ -1.19
ZNF540-201ENST00000316433 ARMC3Q5W041 872 aa7.64□□□□□ -1.19
ZNF540-201ENST00000316433 FBXO31Q5XUX0 539 aaPredicted RBP7.64□□□□□ -1.19
ZNF540-201ENST00000316433 CCDC144CPQ8IYA2 1237 aa7.64□□□□□ -1.19
ZNF540-201ENST00000316433 PARD3BQ8TEW8 1205 aa7.64□□□□□ -1.19
ZNF540-201ENST00000316433 ZKSCAN4Q969J2 545 aaPredicted RBP7.64□□□□□ -1.19
ZNF540-201ENST00000316433 CABS1Q96KC9 395 aa7.64□□□□□ -1.19
ZNF540-201ENST00000316433 STK31Q9BXU1 1019 aa7.64□□□□□ -1.19
ZNF540-201ENST00000316433 DDX19AQ9NUU7 478 aaKnown RBP7.64□□□□□ -1.19
ZNF540-201ENST00000316433 HYPKQ9NX55 129 aa7.64□□□□□ -1.19
ZNF540-201ENST00000316433 TRMT1Q9NXH9 659 aaKnown RBP7.64□□□□□ -1.19
ZNF540-201ENST00000316433 SNX14Q9Y5W7 946 aa7.64□□□□□ -1.19
ZNF540-201ENST00000316433 NHSL1Q5SYE7 1610 aa7.64□□□□□ -1.19
ZNF540-201ENST00000316433 CHUKO15111 745 aa7.64□□□□□ -1.19
ZNF540-201ENST00000316433 PECAM1P16284 738 aaPredicted RBP7.64□□□□□ -1.19
ZNF540-201ENST00000316433 CD151P48509 253 aa7.64□□□□□ -1.19
ZNF540-201ENST00000316433 SNW1Q13573 536 aaKnown RBP7.64□□□□□ -1.19
ZNF540-201ENST00000316433 TMX4Q9H1E5 349 aaPredicted RBP7.64□□□□□ -1.19
ZNF540-201ENST00000316433 ATRNO75882 1429 aa7.63□□□□□ -1.19
ZNF540-201ENST00000316433 NWD2Q9ULI1 1742 aa7.63□□□□□ -1.19
ZNF540-201ENST00000316433 PRPHP41219 470 aa7.63□□□□□ -1.19
ZNF540-201ENST00000316433 FOXD4L6Q3SYB3 417 aaPredicted RBP7.63□□□□□ -1.19
ZNF540-201ENST00000316433 SULT6B1Q6IMI4 303 aa7.63□□□□□ -1.19
ZNF540-201ENST00000316433 FOXD4L3Q6VB84 417 aaPredicted RBP7.63□□□□□ -1.19
ZNF540-201ENST00000316433 POTEDQ86YR6 584 aa7.63□□□□□ -1.19
ZNF540-201ENST00000316433 CRACR2AQ9BSW2 395 aa7.63□□□□□ -1.19
ZNF540-201ENST00000316433 KIF9Q9HAQ2 790 aa7.63□□□□□ -1.19
ZNF540-201ENST00000316433 GPR108Q9NPR9 543 aa7.63□□□□□ -1.19
ZNF540-201ENST00000316433 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.63□□□□□ -1.19
ZNF540-201ENST00000316433 AKAP2Q9Y2D5 859 aa7.63□□□□□ -1.19
ZNF540-201ENST00000316433 SRGAP3O43295 1099 aa7.63□□□□□ -1.19
ZNF540-201ENST00000316433 TADA3O75528 432 aa7.63□□□□□ -1.19
ZNF540-201ENST00000316433 HOXC9P31274 260 aa7.63□□□□□ -1.19
ZNF540-201ENST00000316433 AMOTQ4VCS5 1084 aa7.63□□□□□ -1.19
ZNF540-201ENST00000316433 IQCA1Q86XH1 822 aa7.63□□□□□ -1.19
ZNF540-201ENST00000316433 MAP4K1Q92918 833 aa7.63□□□□□ -1.19
ZNF540-201ENST00000316433 EVI5LQ96CN4 794 aa7.63□□□□□ -1.19
ZNF540-201ENST00000316433 PLEKHA4Q9H4M7 779 aa7.63□□□□□ -1.19
ZNF540-201ENST00000316433 GOPCQ9HD26 462 aa7.63□□□□□ -1.19
ZNF540-201ENST00000316433 PCDHGA4Q9Y5G9 962 aa7.63□□□□□ -1.19
ZNF540-201ENST00000316433 EFCAB8A8MWE9 144 aa7.63□□□□□ -1.19
ZNF540-201ENST00000316433 EXOC5O00471 708 aa7.63□□□□□ -1.19
ZNF540-201ENST00000316433 ZRSR2Q15696 482 aaKnown RBP7.63□□□□□ -1.19
ZNF540-201ENST00000316433 LUZP1Q86V48 1076 aa7.63□□□□□ -1.19
ZNF540-201ENST00000316433 MAF1Q9H063 256 aa7.63□□□□□ -1.19
ZNF540-201ENST00000316433 TBC1D2BQ9UPU7 963 aa7.63□□□□□ -1.19
ZNF540-201ENST00000316433 STX6O43752 255 aa7.62□□□□□ -1.19
ZNF540-201ENST00000316433 SLC4A2P04920 1241 aa7.62□□□□□ -1.19
ZNF540-201ENST00000316433 CLNS1AP54105 237 aaKnown RBP7.62□□□□□ -1.19
ZNF540-201ENST00000316433 SNX1Q13596 522 aa7.62□□□□□ -1.19
ZNF540-201ENST00000316433 KRT32Q14532 448 aa7.62□□□□□ -1.19
ZNF540-201ENST00000316433 MSL3Q8N5Y2 521 aaKnown RBP7.62□□□□□ -1.19
ZNF540-201ENST00000316433 IP6K1Q92551 441 aa7.62□□□□□ -1.19
ZNF540-201ENST00000316433 MTMR6Q9Y217 621 aa7.62□□□□□ -1.19
ZNF540-201ENST00000316433 NPHP3Q7Z494 1330 aa7.62□□□□□ -1.19
ZNF540-201ENST00000316433 HMOX1P09601 288 aa7.62□□□□□ -1.19
ZNF540-201ENST00000316433 PSMA5P28066 241 aa7.62□□□□□ -1.19
ZNF540-201ENST00000316433 RAB27AP51159 221 aa7.62□□□□□ -1.19
ZNF540-201ENST00000316433 EIF4A1P60842 406 aaKnown RBP7.62□□□□□ -1.19
ZNF540-201ENST00000316433 WLSQ5T9L3 541 aa7.62□□□□□ -1.19
ZNF540-201ENST00000316433 NCAPG2Q86XI2 1143 aa7.62□□□□□ -1.19
ZNF540-201ENST00000316433 OTUD7AQ8TE49 926 aaPredicted RBP7.62□□□□□ -1.19
ZNF540-201ENST00000316433 ZBTB10Q96DT7 871 aa7.62□□□□□ -1.19
ZNF540-201ENST00000316433 EYA1Q99502 592 aa7.62□□□□□ -1.19
ZNF540-201ENST00000316433 SCAND2PQ9GZW5 306 aaPredicted RBP7.62□□□□□ -1.19
ZNF540-201ENST00000316433 CD248Q9HCU0 757 aa7.62□□□□□ -1.19
ZNF540-201ENST00000316433 MAP2K7O14733 419 aa7.61□□□□□ -1.19
ZNF540-201ENST00000316433 NAP1L1P55209 391 aaKnown RBP7.61□□□□□ -1.19
ZNF540-201ENST00000316433 APOBRQ0VD83 1088 aa7.61□□□□□ -1.19
ZNF540-201ENST00000316433 AKAP4Q5JQC9 854 aa7.61□□□□□ -1.19
ZNF540-201ENST00000316433 GORABQ5T7V8 394 aa7.61□□□□□ -1.19
ZNF540-201ENST00000316433 GPR161Q8N6U8 529 aaKnown RBP7.61□□□□□ -1.19
ZNF540-201ENST00000316433 RHPN1Q8TCX5 695 aa7.61□□□□□ -1.19
ZNF540-201ENST00000316433 SH3TC1Q8TE82 1336 aa7.61□□□□□ -1.19
ZNF540-201ENST00000316433 MRFAP1L1Q96HT8 127 aa7.61□□□□□ -1.19
ZNF540-201ENST00000316433 UTP14AQ9BVJ6 771 aaKnown RBP7.61□□□□□ -1.19
ZNF540-201ENST00000316433 C1orf115Q9H7X2 142 aa7.61□□□□□ -1.19
ZNF540-201ENST00000316433 TSPYL4Q9UJ04 414 aa7.61□□□□□ -1.19
ZNF540-201ENST00000316433 TNS2Q63HR2 1409 aa7.61□□□□□ -1.19
ZNF540-201ENST00000316433 SALL1Q9NSC2 1324 aa7.61□□□□□ -1.19
ZNF540-201ENST00000316433 FAM237AA0A1B0GTK4 181 aa7.61□□□□□ -1.19
ZNF540-201ENST00000316433 CDKL5O76039 1030 aa7.61□□□□□ -1.19
ZNF540-201ENST00000316433 IMPDH2P12268 514 aa7.61□□□□□ -1.19
ZNF540-201ENST00000316433 NEK4P51957 841 aa7.61□□□□□ -1.19
ZNF540-201ENST00000316433 CCZ1BP86790 482 aa7.61□□□□□ -1.19
ZNF540-201ENST00000316433 CCZ1P86791 482 aaPredicted RBP7.61□□□□□ -1.19
ZNF540-201ENST00000316433 NAA16Q6N069 864 aaPredicted RBP7.61□□□□□ -1.19
ZNF540-201ENST00000316433 RUFY3Q7L099 469 aa7.61□□□□□ -1.19
ZNF540-201ENST00000316433 C3orf20Q8ND61 904 aa7.61□□□□□ -1.19
ZNF540-201ENST00000316433 CNNM3Q8NE01 707 aa7.61□□□□□ -1.19
ZNF540-201ENST00000316433 SMARCC2Q8TAQ2 1214 aa7.61□□□□□ -1.19
ZNF540-201ENST00000316433 NECTIN2Q92692 538 aa7.61□□□□□ -1.19
ZNF540-201ENST00000316433 GPATCH3Q96I76 525 aa7.61□□□□□ -1.19
ZNF540-201ENST00000316433 THUMPD2Q9BTF0 503 aaKnown RBP7.61□□□□□ -1.19
ZNF540-201ENST00000316433 MMTAG2Q9BU76 263 aaKnown RBP7.61□□□□□ -1.19
ZNF540-201ENST00000316433 ACBD3Q9H3P7 528 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms