RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 LEMD3Q9Y2U8 911 aa16.9■□□□□ 0.3
C9orf3-202ENST00000297979 NRXN2Q9P2S2 1712 aa16.9■□□□□ 0.3
C9orf3-202ENST00000297979 XDHP47989 1333 aa16.9■□□□□ 0.3
C9orf3-202ENST00000297979 IRS2Q9Y4H2 1338 aa16.9■□□□□ 0.3
C9orf3-202ENST00000297979 ZNF213O14771 459 aa16.9■□□□□ 0.3
C9orf3-202ENST00000297979 APPP05067 770 aa16.89■□□□□ 0.29
C9orf3-202ENST00000297979 NECAB1Q8N987 351 aa16.89■□□□□ 0.29
C9orf3-202ENST00000297979 RAI14Q9P0K7 980 aa16.89■□□□□ 0.29
C9orf3-202ENST00000297979 PTMSP20962 102 aa16.89■□□□□ 0.29
C9orf3-202ENST00000297979 EXOSC10Q01780 885 aaKnown RBP16.89■□□□□ 0.29
C9orf3-202ENST00000297979 ZMYM6O95789 1325 aa16.89■□□□□ 0.29
C9orf3-202ENST00000297979 PNPLA7Q6ZV29 1317 aa16.89■□□□□ 0.29
C9orf3-202ENST00000297979 KLRG2A4D1S0 409 aaPredicted RBP16.88■□□□□ 0.29
C9orf3-202ENST00000297979 GOLGA6L22H0YM25 854 aa16.88■□□□□ 0.29
C9orf3-202ENST00000297979 ZBTB22O15209 634 aa16.88■□□□□ 0.29
C9orf3-202ENST00000297979 HOXA10P31260 410 aaPredicted RBP16.88■□□□□ 0.29
C9orf3-202ENST00000297979 ARMT1Q9H993 441 aa16.88■□□□□ 0.29
C9orf3-202ENST00000297979 CACNA1SQ13698 1873 aa16.88■□□□□ 0.29
C9orf3-202ENST00000297979 ALX1Q15699 326 aa16.88■□□□□ 0.29
C9orf3-202ENST00000297979 ANKRD31Q8N7Z5 1873 aa16.88■□□□□ 0.29
C9orf3-202ENST00000297979 PATL2C9JE40 543 aaKnown RBP16.88■□□□□ 0.29
C9orf3-202ENST00000297979 GNAT2P19087 354 aa16.88■□□□□ 0.29
C9orf3-202ENST00000297979 CYP7A1P22680 504 aa16.88■□□□□ 0.29
C9orf3-202ENST00000297979 BRF1Q92994 677 aa16.88■□□□□ 0.29
C9orf3-202ENST00000297979 LRRC2Q9BYS8 371 aa16.88■□□□□ 0.29
C9orf3-202ENST00000297979 WDR33Q9C0J8 1336 aaKnown RBP16.87■□□□□ 0.29
C9orf3-202ENST00000297979 SLC51AQ86UW1 340 aa16.87■□□□□ 0.29
C9orf3-202ENST00000297979 TXNRD3Q86VQ6 643 aa16.87■□□□□ 0.29
C9orf3-202ENST00000297979 CRAMP1Q96RY5 1269 aa16.87■□□□□ 0.29
C9orf3-202ENST00000297979 AGXT2Q9BYV1 514 aa16.87■□□□□ 0.29
C9orf3-202ENST00000297979 BBOX1O75936 387 aa16.87■□□□□ 0.29
C9orf3-202ENST00000297979 GJB2P29033 226 aa16.87■□□□□ 0.29
C9orf3-202ENST00000297979 LCORLQ8N3X6 602 aa16.87■□□□□ 0.29
C9orf3-202ENST00000297979 BRPF3Q9ULD4 1205 aa16.87■□□□□ 0.29
C9orf3-202ENST00000297979 NCOA7Q8NI08 942 aa16.86■□□□□ 0.29
C9orf3-202ENST00000297979 BRIP1Q9BX63 1249 aa16.86■□□□□ 0.29
C9orf3-202ENST00000297979 MAST2Q6P0Q8 1798 aa16.86■□□□□ 0.29
C9orf3-202ENST00000297979 GPSM2P81274 684 aa16.86■□□□□ 0.29
C9orf3-202ENST00000297979 FOXD4L5Q5VV16 416 aaPredicted RBP16.86■□□□□ 0.29
C9orf3-202ENST00000297979 MIGA1Q8NAN2 632 aa16.86■□□□□ 0.29
C9orf3-202ENST00000297979 FBXO41Q8TF61 875 aa16.86■□□□□ 0.29
C9orf3-202ENST00000297979 FOXD4L4Q8WXT5 416 aaPredicted RBP16.86■□□□□ 0.29
C9orf3-202ENST00000297979 EPB41L4AQ9HCS5 686 aaPredicted RBP16.86■□□□□ 0.29
C9orf3-202ENST00000297979 TRAK2O60296 914 aa16.85■□□□□ 0.29
C9orf3-202ENST00000297979 STK3Q13188 491 aa16.85■□□□□ 0.29
C9orf3-202ENST00000297979 C15orf52Q6ZUT6 534 aaKnown RBP16.85■□□□□ 0.29
C9orf3-202ENST00000297979 RALYLQ86SE5 291 aaKnown RBP16.85■□□□□ 0.29
C9orf3-202ENST00000297979 IFNL3Q8IZI9 196 aa16.85■□□□□ 0.29
C9orf3-202ENST00000297979 GTF3C6Q969F1 213 aa16.85■□□□□ 0.29
C9orf3-202ENST00000297979 NBPF3Q9H094 633 aa16.85■□□□□ 0.29
C9orf3-202ENST00000297979 NAPBQ9H115 298 aa16.85■□□□□ 0.29
C9orf3-202ENST00000297979 LRRC37AA6NMS7 1700 aa16.85■□□□□ 0.29
C9orf3-202ENST00000297979 CHAF1AQ13111 956 aaPredicted RBP16.85■□□□□ 0.29
C9orf3-202ENST00000297979 NAA16Q6N069 864 aaPredicted RBP16.85■□□□□ 0.29
C9orf3-202ENST00000297979 ADGRA1Q86SQ6 560 aa16.85■□□□□ 0.29
C9orf3-202ENST00000297979 MB21D2Q8IYB1 491 aaPredicted RBP16.85■□□□□ 0.29
C9orf3-202ENST00000297979 FBXL16Q8N461 479 aa16.85■□□□□ 0.29
C9orf3-202ENST00000297979 NACAP1Q9BZK3 213 aa16.85■□□□□ 0.29
C9orf3-202ENST00000297979 SLC4A4Q9Y6R1 1079 aa16.85■□□□□ 0.29
C9orf3-202ENST00000297979 GSG1L2A8MUP6 293 aa16.84■□□□□ 0.29
C9orf3-202ENST00000297979 MMP10P09238 476 aa16.84■□□□□ 0.29
C9orf3-202ENST00000297979 SYT1P21579 422 aa16.84■□□□□ 0.29
C9orf3-202ENST00000297979 ATP2B4P23634 1241 aa16.84■□□□□ 0.29
C9orf3-202ENST00000297979 MCM5P33992 734 aa16.84■□□□□ 0.29
C9orf3-202ENST00000297979 PARP3Q9Y6F1 533 aa16.84■□□□□ 0.29
C9orf3-202ENST00000297979 MAGEB6P1A0A0J9YX57 407 aa16.84■□□□□ 0.29
C9orf3-202ENST00000297979 STX6O43752 255 aa16.84■□□□□ 0.29
C9orf3-202ENST00000297979 TRDNQ13061 729 aa16.84■□□□□ 0.29
C9orf3-202ENST00000297979 MCTP1Q6DN14 999 aa16.84■□□□□ 0.29
C9orf3-202ENST00000297979 TMC4Q7Z404 712 aa16.84■□□□□ 0.29
C9orf3-202ENST00000297979 ZNF804AQ7Z570 1209 aa16.84■□□□□ 0.29
C9orf3-202ENST00000297979 TBC1D10CQ8IV04 446 aa16.84■□□□□ 0.29
C9orf3-202ENST00000297979 NSFL1CQ9UNZ2 370 aaKnown RBP16.84■□□□□ 0.29
C9orf3-202ENST00000297979 WDR19Q8NEZ3 1342 aa16.84■□□□□ 0.29
C9orf3-202ENST00000297979 TIAM2Q8IVF5 1701 aa16.84■□□□□ 0.29
C9orf3-202ENST00000297979 UFL1O94874 794 aa16.83■□□□□ 0.29
C9orf3-202ENST00000297979 GSE1Q14687 1217 aa16.83■□□□□ 0.29
C9orf3-202ENST00000297979 CHST3Q7LGC8 479 aa16.83■□□□□ 0.29
C9orf3-202ENST00000297979 BBXQ8WY36 941 aaPredicted RBP16.83■□□□□ 0.29
C9orf3-202ENST00000297979 GGA1Q9UJY5 639 aa16.83■□□□□ 0.29
C9orf3-202ENST00000297979 PRKAB2O43741 272 aa16.83■□□□□ 0.28
C9orf3-202ENST00000297979 APOBRQ0VD83 1088 aa16.83■□□□□ 0.28
C9orf3-202ENST00000297979 IPO4Q8TEX9 1081 aaKnown RBP16.83■□□□□ 0.28
C9orf3-202ENST00000297979 SECISBP2LQ93073 1101 aaKnown RBP16.83■□□□□ 0.28
C9orf3-202ENST00000297979 PRC1O43663 620 aa16.83■□□□□ 0.28
C9orf3-202ENST00000297979 NSUN4Q96CB9 384 aaKnown RBP16.83■□□□□ 0.28
C9orf3-202ENST00000297979 CCDC88AQ3V6T2 1871 aa16.82■□□□□ 0.28
C9orf3-202ENST00000297979 CHD4Q14839 1912 aa16.82■□□□□ 0.28
C9orf3-202ENST00000297979 PPEF1O14829 653 aaPredicted RBP16.82■□□□□ 0.28
C9orf3-202ENST00000297979 PFKFB2O60825 505 aa16.82■□□□□ 0.28
C9orf3-202ENST00000297979 ZSCAN22P10073 491 aaPredicted RBP16.82■□□□□ 0.28
C9orf3-202ENST00000297979 TDO2P48775 406 aa16.82■□□□□ 0.28
C9orf3-202ENST00000297979 EZH2Q15910 746 aaKnown RBP16.82■□□□□ 0.28
C9orf3-202ENST00000297979 SKOR2Q2VWA4 1001 aaPredicted RBP16.82■□□□□ 0.28
C9orf3-202ENST00000297979 TMED8Q6PL24 325 aaPredicted RBP16.82■□□□□ 0.28
C9orf3-202ENST00000297979 TDRD7Q8NHU6 1098 aaKnown RBP16.82■□□□□ 0.28
C9orf3-202ENST00000297979 ZNF384Q8TF68 577 aa16.82■□□□□ 0.28
C9orf3-202ENST00000297979 CAMKK2Q96RR4 588 aa16.82■□□□□ 0.28
C9orf3-202ENST00000297979 RIOK1Q9BRS2 568 aaKnown RBP16.82■□□□□ 0.28
C9orf3-202ENST00000297979 MECOMQ03112 1051 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms