RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 ARMT1Q9H993 441 aa19.64■□□□□ 0.73
CCDC40-201ENST00000269318 DENND2AQ9ULE3 1009 aa19.64■□□□□ 0.73
CCDC40-201ENST00000269318 NSFL1CQ9UNZ2 370 aaKnown RBP19.64■□□□□ 0.73
CCDC40-201ENST00000269318 SEMA3EO15041 775 aa19.63■□□□□ 0.73
CCDC40-201ENST00000269318 PRC1O43663 620 aa19.63■□□□□ 0.73
CCDC40-201ENST00000269318 MBD3O95983 291 aa19.63■□□□□ 0.73
CCDC40-201ENST00000269318 PDIA3P30101 505 aaKnown RBP19.63■□□□□ 0.73
CCDC40-201ENST00000269318 CAVIN1Q6NZI2 390 aaKnown RBP19.63■□□□□ 0.73
CCDC40-201ENST00000269318 CDC37L1Q7L3B6 337 aa19.63■□□□□ 0.73
CCDC40-201ENST00000269318 USP48Q86UV5 1035 aa19.63■□□□□ 0.73
CCDC40-201ENST00000269318 IFNL3Q8IZI9 196 aa19.63■□□□□ 0.73
CCDC40-201ENST00000269318 GDPD2Q9HCC8 539 aa19.63■□□□□ 0.73
CCDC40-201ENST00000269318 IRS2Q9Y4H2 1338 aa19.63■□□□□ 0.73
CCDC40-201ENST00000269318 GSG1L2A8MUP6 293 aa19.63■□□□□ 0.73
CCDC40-201ENST00000269318 CTDNEP1O95476 244 aa19.63■□□□□ 0.73
CCDC40-201ENST00000269318 RBM6P78332 1123 aaKnown RBP19.63■□□□□ 0.73
CCDC40-201ENST00000269318 GRAPQ13588 217 aa19.63■□□□□ 0.73
CCDC40-201ENST00000269318 RALYLQ86SE5 291 aaKnown RBP19.63■□□□□ 0.73
CCDC40-201ENST00000269318 VPS37DQ86XT2 251 aa19.63■□□□□ 0.73
CCDC40-201ENST00000269318 LCORLQ8N3X6 602 aa19.63■□□□□ 0.73
CCDC40-201ENST00000269318 NSUN7Q8NE18 718 aaKnown RBP19.63■□□□□ 0.73
CCDC40-201ENST00000269318 GRAPLQ8TC17 118 aaPredicted RBP19.63■□□□□ 0.73
CCDC40-201ENST00000269318 GPHNQ9NQX3 736 aaPredicted RBP19.63■□□□□ 0.73
CCDC40-201ENST00000269318 CNPY2Q9Y2B0 182 aa19.63■□□□□ 0.73
CCDC40-201ENST00000269318 PDS5AQ29RF7 1337 aaKnown RBP19.62■□□□□ 0.73
CCDC40-201ENST00000269318 CACNA1SQ13698 1873 aa19.62■□□□□ 0.73
CCDC40-201ENST00000269318 ZBTB22O15209 634 aa19.62■□□□□ 0.73
CCDC40-201ENST00000269318 GNAT2P19087 354 aa19.62■□□□□ 0.73
CCDC40-201ENST00000269318 NCLP19338 710 aaKnown RBP19.62■□□□□ 0.73
CCDC40-201ENST00000269318 TXNRD1Q16881 649 aa19.62■□□□□ 0.73
CCDC40-201ENST00000269318 ADGRA1Q86SQ6 560 aa19.62■□□□□ 0.73
CCDC40-201ENST00000269318 GAS2L3Q86XJ1 694 aa19.62■□□□□ 0.73
CCDC40-201ENST00000269318 TCHHQ07283 1943 aa19.61■□□□□ 0.73
CCDC40-201ENST00000269318 NKX2-3Q8TAU0 364 aa19.61■□□□□ 0.73
CCDC40-201ENST00000269318 ABCF2Q9UG63 623 aa19.61■□□□□ 0.73
CCDC40-201ENST00000269318 TIAM2Q8IVF5 1701 aa19.61■□□□□ 0.73
CCDC40-201ENST00000269318 SALL1Q9NSC2 1324 aa19.61■□□□□ 0.73
CCDC40-201ENST00000269318 PRKAB2O43741 272 aa19.6■□□□□ 0.73
CCDC40-201ENST00000269318 GADD45BO75293 160 aaPredicted RBP19.6■□□□□ 0.73
CCDC40-201ENST00000269318 CYP7A1P22680 504 aa19.6■□□□□ 0.73
CCDC40-201ENST00000269318 HIBADHP31937 336 aaKnown RBP19.6■□□□□ 0.73
CCDC40-201ENST00000269318 ZNF445P59923 1031 aa19.6■□□□□ 0.73
CCDC40-201ENST00000269318 ZSCAN23Q3MJ62 389 aa19.6■□□□□ 0.73
CCDC40-201ENST00000269318 CRY2Q49AN0 593 aa19.6■□□□□ 0.73
CCDC40-201ENST00000269318 ZNF772Q68DY9 489 aaPredicted RBP19.6■□□□□ 0.73
CCDC40-201ENST00000269318 NAPBQ9H115 298 aa19.6■□□□□ 0.73
CCDC40-201ENST00000269318 SERPINB2P05120 415 aa19.59■□□□□ 0.73
CCDC40-201ENST00000269318 XRCC6P12956 609 aaKnown RBP eCLIP19.59■□□□□ 0.73
CCDC40-201ENST00000269318 CCT2P78371 535 aaKnown RBP19.59■□□□□ 0.73
CCDC40-201ENST00000269318 DNM1Q05193 864 aaKnown RBP19.59■□□□□ 0.73
CCDC40-201ENST00000269318 TRDNQ13061 729 aa19.59■□□□□ 0.73
CCDC40-201ENST00000269318 MIGA1Q8NAN2 632 aa19.59■□□□□ 0.73
CCDC40-201ENST00000269318 NCOA5Q9HCD5 579 aaKnown RBP19.59■□□□□ 0.73
CCDC40-201ENST00000269318 TFCP2L1Q9NZI6 479 aa19.59■□□□□ 0.73
CCDC40-201ENST00000269318 RAI14Q9P0K7 980 aa19.59■□□□□ 0.73
CCDC40-201ENST00000269318 BRPF3Q9ULD4 1205 aa19.59■□□□□ 0.73
CCDC40-201ENST00000269318 ZNF384Q8TF68 577 aa19.59■□□□□ 0.73
CCDC40-201ENST00000269318 TMEM63CQ9P1W3 806 aa19.59■□□□□ 0.73
CCDC40-201ENST00000269318 RBM27Q9P2N5 1060 aaKnown RBP19.59■□□□□ 0.73
CCDC40-201ENST00000269318 SLC4A4Q9Y6R1 1079 aa19.59■□□□□ 0.73
CCDC40-201ENST00000269318 NEDD4P46934 1319 aa19.58■□□□□ 0.73
CCDC40-201ENST00000269318 PTPDC1A2A3K4 754 aa19.58■□□□□ 0.73
CCDC40-201ENST00000269318 MRE11P49959 708 aa19.58■□□□□ 0.73
CCDC40-201ENST00000269318 HMGN5P82970 282 aaKnown RBP19.58■□□□□ 0.73
CCDC40-201ENST00000269318 DDR1Q08345 913 aa19.58■□□□□ 0.73
CCDC40-201ENST00000269318 CYB5R4Q7L1T6 521 aa19.58■□□□□ 0.73
CCDC40-201ENST00000269318 SLC51AQ86UW1 340 aa19.58■□□□□ 0.73
CCDC40-201ENST00000269318 TXNRD3Q86VQ6 643 aa19.58■□□□□ 0.73
CCDC40-201ENST00000269318 DDX11Q96FC9 970 aa19.58■□□□□ 0.73
CCDC40-201ENST00000269318 HMGB2P26583 209 aaKnown RBP19.57■□□□□ 0.72
CCDC40-201ENST00000269318 CHMP4CQ96CF2 233 aa19.57■□□□□ 0.72
CCDC40-201ENST00000269318 RIOK1Q9BRS2 568 aaKnown RBP19.57■□□□□ 0.72
CCDC40-201ENST00000269318 NACAP1Q9BZK3 213 aa19.57■□□□□ 0.72
CCDC40-201ENST00000269318 HPS5Q9UPZ3 1129 aa19.57■□□□□ 0.72
CCDC40-201ENST00000269318 TACC3Q9Y6A5 838 aa19.57■□□□□ 0.72
CCDC40-201ENST00000269318 ST5P78524 1137 aa19.57■□□□□ 0.72
CCDC40-201ENST00000269318 FERMT3Q86UX7 667 aa19.57■□□□□ 0.72
CCDC40-201ENST00000269318 GRPEL1Q9HAV7 217 aa19.57■□□□□ 0.72
CCDC40-201ENST00000269318 LEMD3Q9Y2U8 911 aa19.57■□□□□ 0.72
CCDC40-201ENST00000269318 MYH13Q9UKX3 1938 aa19.57■□□□□ 0.72
CCDC40-201ENST00000269318 MAGEB6P1A0A0J9YX57 407 aa19.56■□□□□ 0.72
CCDC40-201ENST00000269318 KLF18A0A0U1RQI7 1052 aa19.56■□□□□ 0.72
CCDC40-201ENST00000269318 B4E1Z4 1266 aa19.56■□□□□ 0.72
CCDC40-201ENST00000269318 POLRMTO00411 1230 aaKnown RBP19.56■□□□□ 0.72
CCDC40-201ENST00000269318 PLSCR1O15162 318 aa19.56■□□□□ 0.72
CCDC40-201ENST00000269318 NAP1L2Q9ULW6 460 aaPredicted RBP19.56■□□□□ 0.72
CCDC40-201ENST00000269318 SH2B2O14492 632 aaPredicted RBP19.55■□□□□ 0.72
CCDC40-201ENST00000269318 FIBPO43427 364 aa19.55■□□□□ 0.72
CCDC40-201ENST00000269318 FAM184AQ8NB25 1140 aa19.55■□□□□ 0.72
CCDC40-201ENST00000269318 RPGRQ92834 1020 aaKnown RBP19.55■□□□□ 0.72
CCDC40-201ENST00000269318 ANGEL1Q9UNK9 670 aaKnown RBP19.55■□□□□ 0.72
CCDC40-201ENST00000269318 XDHP47989 1333 aa19.55■□□□□ 0.72
CCDC40-201ENST00000269318 TDO2P48775 406 aa19.55■□□□□ 0.72
CCDC40-201ENST00000269318 CTDSPL2Q05D32 466 aa19.55■□□□□ 0.72
CCDC40-201ENST00000269318 AKNAD1Q5T1N1 836 aa19.55■□□□□ 0.72
CCDC40-201ENST00000269318 NAA16Q6N069 864 aaPredicted RBP19.55■□□□□ 0.72
CCDC40-201ENST00000269318 NSUN4Q96CB9 384 aaKnown RBP19.55■□□□□ 0.72
CCDC40-201ENST00000269318 INCENPQ9NQS7 918 aa19.55■□□□□ 0.72
CCDC40-201ENST00000269318 CHD4Q14839 1912 aa19.54■□□□□ 0.72
CCDC40-201ENST00000269318 GOLGA8BA8MQT2 603 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms