RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 LDHAL6AQ6ZMR3 332 aa21.75■■□□□ 1.07
CPSF3-201ENST00000238112 BRINP3Q76B58 766 aa21.75■■□□□ 1.07
CPSF3-201ENST00000238112 TEX13AQ9BXU3 409 aaPredicted RBP21.75■■□□□ 1.07
CPSF3-201ENST00000238112 STRN4Q9NRL3 753 aa21.75■■□□□ 1.07
CPSF3-201ENST00000238112 SLC3A2P08195 630 aaKnown RBP21.74■■□□□ 1.07
CPSF3-201ENST00000238112 MCAMP43121 646 aa21.74■■□□□ 1.07
CPSF3-201ENST00000238112 GSDMDP57764 484 aa21.74■■□□□ 1.07
CPSF3-201ENST00000238112 KIF23Q02241 960 aaPredicted RBP21.74■■□□□ 1.07
CPSF3-201ENST00000238112 DPCR1Q3MIW9 517 aa21.74■■□□□ 1.07
CPSF3-201ENST00000238112 ANO1Q5XXA6 986 aa21.74■■□□□ 1.07
CPSF3-201ENST00000238112 ZNF592Q92610 1267 aa21.74■■□□□ 1.07
CPSF3-201ENST00000238112 BPIFA3Q9BQP9 254 aa21.74■■□□□ 1.07
CPSF3-201ENST00000238112 GJB4Q9NTQ9 266 aa21.74■■□□□ 1.07
CPSF3-201ENST00000238112 RIC1Q4ADV7 1423 aa21.74■■□□□ 1.07
CPSF3-201ENST00000238112 KIF28PB7ZC32 967 aa21.74■■□□□ 1.07
CPSF3-201ENST00000238112 SYCP1Q15431 976 aa21.74■■□□□ 1.07
CPSF3-201ENST00000238112 SLC9C2Q5TAH2 1124 aa21.74■■□□□ 1.07
CPSF3-201ENST00000238112 DNAJC10Q8IXB1 793 aa21.74■■□□□ 1.07
CPSF3-201ENST00000238112 ANGEL1Q9UNK9 670 aaKnown RBP21.74■■□□□ 1.07
CPSF3-201ENST00000238112 RIPOR2Q9Y4F9 1068 aa21.74■■□□□ 1.07
CPSF3-201ENST00000238112 ZNF202O95125 648 aa21.73■■□□□ 1.07
CPSF3-201ENST00000238112 ITGA6P23229 1130 aa21.73■■□□□ 1.07
CPSF3-201ENST00000238112 ADD2P35612 726 aa21.73■■□□□ 1.07
CPSF3-201ENST00000238112 TPM4P67936 248 aa21.73■■□□□ 1.07
CPSF3-201ENST00000238112 TTF1Q15361 905 aaPredicted RBP21.73■■□□□ 1.07
CPSF3-201ENST00000238112 CNNM1Q9NRU3 951 aa21.73■■□□□ 1.07
CPSF3-201ENST00000238112 STARD3NLO95772 234 aa21.73■■□□□ 1.07
CPSF3-201ENST00000238112 CCZ1BP86790 482 aa21.73■■□□□ 1.07
CPSF3-201ENST00000238112 CCZ1P86791 482 aaPredicted RBP21.73■■□□□ 1.07
CPSF3-201ENST00000238112 NCBP1Q09161 790 aaKnown RBP21.73■■□□□ 1.07
CPSF3-201ENST00000238112 PTPN14Q15678 1187 aa21.73■■□□□ 1.07
CPSF3-201ENST00000238112 ZMYM6O95789 1325 aa21.73■■□□□ 1.07
CPSF3-201ENST00000238112 CDKL5O76039 1030 aa21.72■■□□□ 1.07
CPSF3-201ENST00000238112 APPP05067 770 aa21.72■■□□□ 1.07
CPSF3-201ENST00000238112 METAP2P50579 478 aaKnown RBP eCLIP21.72■■□□□ 1.07
CPSF3-201ENST00000238112 EVA1CP58658 441 aa21.72■■□□□ 1.07
CPSF3-201ENST00000238112 IMPACTQ9P2X3 320 aa21.72■■□□□ 1.07
CPSF3-201ENST00000238112 MAP3K15Q6ZN16 1313 aa21.72■■□□□ 1.07
CPSF3-201ENST00000238112 CDHR2Q9BYE9 1310 aa21.72■■□□□ 1.07
CPSF3-201ENST00000238112 ANKRD18BA2A2Z9 1011 aa21.72■■□□□ 1.07
CPSF3-201ENST00000238112 USP27XA6NNY8 438 aa21.72■■□□□ 1.07
CPSF3-201ENST00000238112 CMA1P23946 247 aa21.72■■□□□ 1.07
CPSF3-201ENST00000238112 GIGYF2Q6Y7W6 1299 aaKnown RBP21.72■■□□□ 1.07
CPSF3-201ENST00000238112 RGS22Q8NE09 1264 aa21.72■■□□□ 1.07
CPSF3-201ENST00000238112 GREM2Q9H772 168 aa21.72■■□□□ 1.07
CPSF3-201ENST00000238112 SMC2O95347 1197 aa21.71■■□□□ 1.07
CPSF3-201ENST00000238112 PFKFB1P16118 471 aa21.71■■□□□ 1.07
CPSF3-201ENST00000238112 GPTP24298 496 aa21.71■■□□□ 1.07
CPSF3-201ENST00000238112 CPLX2Q6PUV4 134 aaKnown RBP21.71■■□□□ 1.07
CPSF3-201ENST00000238112 SYNE4Q8N205 404 aa21.71■■□□□ 1.07
CPSF3-201ENST00000238112 TTLL11Q8NHH1 800 aa21.71■■□□□ 1.07
CPSF3-201ENST00000238112 ALG1Q9BT22 464 aa21.71■■□□□ 1.07
CPSF3-201ENST00000238112 BIN1O00499 593 aa21.71■■□□□ 1.07
CPSF3-201ENST00000238112 IDH1O75874 414 aaKnown RBP21.71■■□□□ 1.07
CPSF3-201ENST00000238112 NLRP12P59046 1061 aa21.71■■□□□ 1.07
CPSF3-201ENST00000238112 GNL2Q13823 731 aaKnown RBP21.71■■□□□ 1.07
CPSF3-201ENST00000238112 AXDND1Q5T1B0 1012 aaPredicted RBP21.71■■□□□ 1.07
CPSF3-201ENST00000238112 ZNF512BQ96KM6 892 aaPredicted RBP21.71■■□□□ 1.07
CPSF3-201ENST00000238112 NBPF3Q9H094 633 aa21.71■■□□□ 1.07
CPSF3-201ENST00000238112 ASAP1Q9ULH1 1129 aa21.71■■□□□ 1.07
CPSF3-201ENST00000238112 NEDD4P46934 1319 aa21.7■■□□□ 1.07
CPSF3-201ENST00000238112 CTSWP56202 376 aa21.7■■□□□ 1.06
CPSF3-201ENST00000238112 CBX1P83916 185 aa21.7■■□□□ 1.06
CPSF3-201ENST00000238112 NBPF11Q86T75 865 aa21.7■■□□□ 1.06
CPSF3-201ENST00000238112 TBC1D10CQ8IV04 446 aa21.7■■□□□ 1.06
CPSF3-201ENST00000238112 OSBPL5Q9H0X9 879 aaPredicted RBP21.7■■□□□ 1.06
CPSF3-201ENST00000238112 SH2B2O14492 632 aaPredicted RBP21.69■■□□□ 1.06
CPSF3-201ENST00000238112 SLC39A14Q15043 492 aa21.69■■□□□ 1.06
CPSF3-201ENST00000238112 NYAP1Q6ZVC0 841 aa21.69■■□□□ 1.06
CPSF3-201ENST00000238112 NLRP10Q86W26 655 aa21.69■■□□□ 1.06
CPSF3-201ENST00000238112 TBC1D2BQ9UPU7 963 aa21.69■■□□□ 1.06
CPSF3-201ENST00000238112 ATRNO75882 1429 aa21.69■■□□□ 1.06
CPSF3-201ENST00000238112 MARCKSP29966 332 aaPredicted RBP21.69■■□□□ 1.06
CPSF3-201ENST00000238112 UBE3CQ15386 1083 aa21.69■■□□□ 1.06
CPSF3-201ENST00000238112 CYB5R4Q7L1T6 521 aa21.69■■□□□ 1.06
CPSF3-201ENST00000238112 PKNOX2Q96KN3 472 aa21.69■■□□□ 1.06
CPSF3-201ENST00000238112 TRMT1Q9NXH9 659 aaKnown RBP21.69■■□□□ 1.06
CPSF3-201ENST00000238112 SHANK3Q9BYB0 1731 aa21.69■■□□□ 1.06
CPSF3-201ENST00000238112 HLFQ16534 295 aa21.68■■□□□ 1.06
CPSF3-201ENST00000238112 VPS37DQ86XT2 251 aa21.68■■□□□ 1.06
CPSF3-201ENST00000238112 CCAR2Q8N163 923 aaKnown RBP21.68■■□□□ 1.06
CPSF3-201ENST00000238112 JMYQ8N9B5 988 aa21.68■■□□□ 1.06
CPSF3-201ENST00000238112 XPO4Q9C0E2 1151 aaKnown RBP21.68■■□□□ 1.06
CPSF3-201ENST00000238112 PIH1D3Q9NQM4 214 aaKnown RBP21.68■■□□□ 1.06
CPSF3-201ENST00000238112 IFNKQ9P0W0 207 aa21.68■■□□□ 1.06
CPSF3-201ENST00000238112 DENND2AQ9ULE3 1009 aa21.68■■□□□ 1.06
CPSF3-201ENST00000238112 DDX60Q8IY21 1712 aaKnown RBP21.68■■□□□ 1.06
CPSF3-201ENST00000238112 MYH7P12883 1935 aa21.68■■□□□ 1.06
CPSF3-201ENST00000238112 PIGBQ92521 554 aa21.68■■□□□ 1.06
CPSF3-201ENST00000238112 AIFM3Q96NN9 605 aa21.68■■□□□ 1.06
CPSF3-201ENST00000238112 PRDM10Q9NQV6 1147 aa21.68■■□□□ 1.06
CPSF3-201ENST00000238112 TAOK2Q9UL54 1235 aa21.68■■□□□ 1.06
CPSF3-201ENST00000238112 ZNF532Q9HCE3 1301 aa21.68■■□□□ 1.06
CPSF3-201ENST00000238112 MROH7-TTC4A0A0A0MT08 1334 aa21.67■■□□□ 1.06
CPSF3-201ENST00000238112 WDHD1O75717 1129 aaPredicted RBP21.67■■□□□ 1.06
CPSF3-201ENST00000238112 RXRAP19793 462 aa21.67■■□□□ 1.06
CPSF3-201ENST00000238112 KRT40Q6A162 431 aa21.67■■□□□ 1.06
CPSF3-201ENST00000238112 APOA5Q6Q788 366 aa21.67■■□□□ 1.06
CPSF3-201ENST00000238112 CCDC150Q8NCX0 1101 aa21.67■■□□□ 1.06
CPSF3-201ENST00000238112 IRS4O14654 1257 aaPredicted RBP21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms