RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Hs2st1Q8R3H7 356 aa17.7■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Zfp251Q6PCX8 632 aa17.7■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Ccdc93Q7TQK5 629 aa17.7■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Tmx1Q8VBT0 278 aa17.7■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 InsrrQ9WTL4 1300 aa17.7■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Bach2P97303 839 aa17.7■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Luc7l2Q7TNC4 392 aaKnown RBP17.7■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Paf1Q8K2T8 535 aa17.7■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Tubb4aQ9D6F9 444 aa17.7■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Atp12aQ9Z1W8 1035 aa17.7■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 PtprmP28828 1452 aa17.7■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Mroh1E0CZ22 1640 aa17.7■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Stox1B2RQL2 990 aa17.69■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Fchsd1Q6PFY1 688 aa17.69■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Mrpl50Q8VDT9 159 aaKnown RBP17.69■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Ccdc7Q9D541 371 aa17.69■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Akap12Q9WTQ5 1684 aa17.69■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Tsg101Q61187 391 aa17.69■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Calm1P0DP26 149 aaKnown RBP17.69■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Calm2P0DP27 149 aaKnown RBP17.69■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Calm3P0DP28 149 aaKnown RBP17.69■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Cap2Q9CYT6 476 aa17.69■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 MarcksP26645 309 aaKnown RBP17.69■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Cdcp1Q5U462 833 aa17.69■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Gbp4Q61107 620 aa17.69■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Tmem2Q5FWI3 1383 aa17.69■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Jdp2P97875 163 aa17.68■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 RragbQ6NTA4 374 aa17.68■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Bin2D3Z6Q9 489 aa17.68■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Gm28047Q3US59 414 aa17.68■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Osbpl5Q9ER64 874 aa17.68■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 GnaqP21279 359 aa17.68■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Pex1Q5BL07 1284 aa17.68■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Pus3Q9JI38 481 aa17.68■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Erbb4Q61527 1308 aa17.68■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Cul5Q9D5V5 780 aa17.68■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Ncf1Q09014 390 aa17.67■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Fam228bQ497Q6 232 aa17.67■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Prr16A3KMN5 304 aa17.67■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 1700029H14RikE9PY36 240 aa17.67■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 TxlnaQ6PAM1 554 aaKnown RBP17.67■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Clip2Q9Z0H8 1047 aa17.67■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Cyp2ab1S4R196 498 aa17.67■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Prl3d1P18121 224 aa17.67■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 IqcgQ80W32 419 aa17.67■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Smim5Q8BT42 78 aa17.67■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Ppp1r37Q8BKR5 712 aa17.67■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Q9D5Q8 446 aa17.67■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 ArsiQ32KI9 573 aa17.66■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Ccdc12Q8R344 166 aaKnown RBP17.66■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Rrp1P56183 494 aaKnown RBP17.66■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Cyp24a1Q64441 514 aa17.66■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Xrcc4Q924T3 326 aa17.66■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Ift88Q61371 824 aa17.66■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Eno4Q8C042 619 aa17.66■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Zfp202Q8C879 641 aa17.66■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Erlin1Q91X78 346 aa17.66■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Themis2Q91YX0 663 aa17.66■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Ssr1Q9CY50 286 aaKnown RBP17.66■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Xrn1P97789 1719 aaKnown RBP17.65■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Nxf7Q80SZ6 620 aaKnown RBP17.65■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Lrrc59Q922Q8 307 aaKnown RBP17.65■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Myo5cE9Q1F5 1742 aa17.65■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Frat1P70339 274 aa17.65■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 ParnQ8VDG3 624 aa17.65■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Tecpr2Q3UH45 1423 aa17.65■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 RereQ80TZ9 1558 aa17.65■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Jade2Q6ZQF7 829 aa17.65■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Lekr1B2RVN1 116 aa17.65■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Zdhhc9P59268 364 aa17.65■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Zfp113Q8C689 439 aa17.65■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Brd3Q8K2F0 726 aaKnown RBP17.65■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Irx4Q9QY61 515 aa17.65■□□□□ 0.42
Ccdc88b-201ENSMUST00000113440 Oas2E9Q9A9 742 aa17.64■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Csrnp1P59054 583 aa17.64■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Tspyl3Q3UYP3 334 aa17.64■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Prm3Q62100 101 aa17.64■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Tcp11l1Q8BTG3 509 aa17.64■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Ccdc122Q8BVN0 290 aa17.64■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Gtpbp4Q99ME9 634 aaKnown RBP17.64■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Lonrf3Q9D4H7 753 aa17.64■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Ssrp1Q08943 708 aaKnown RBP17.64■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Cacna2d4Q5RJF7 1116 aa17.64■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Cd22P35329 862 aa17.64■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Kcnj14Q8JZN3 434 aa17.64■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Pkd2l2Q9JLG4 621 aa17.64■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Kcnh3Q9WVJ0 1095 aa17.64■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Vgll3P85442 326 aa17.63■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 StrbpQ91WM1 672 aaKnown RBP17.63■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Mipol1Q9D9F8 279 aa17.63■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Uchl5Q9WUP7 329 aa17.63■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Abca9Q8K449 1623 aa17.63■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Plbd2Q3TCN2 594 aa17.63■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Gtf3c5Q8R2T8 520 aa17.63■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Nop2Q922K7 793 aaKnown RBP17.63■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Smtnl1Q99LM3 459 aa17.63■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Dydc1Q9D9T0 175 aa17.63■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 NpeppsQ11011 920 aa17.63■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Pard3Q99NH2 1333 aa17.63■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 1700113H08RikE9Q9Q5 327 aa17.63■□□□□ 0.41
Retrieved 100 of 22,080 RNA–protein pairs in 20.8 ms