RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 DVL1P1P54792 670 aaPredicted RBP16.29■□□□□ 0.2
CLN3-250ENST00000636839 LHFPL4Q7Z7J7 247 aa16.29■□□□□ 0.2
CLN3-250ENST00000636839 OR13D1Q8NGV5 346 aa16.29■□□□□ 0.2
CLN3-250ENST00000636839 MAGT1Q9H0U3 335 aa16.29■□□□□ 0.2
CLN3-250ENST00000636839 KPTNQ9Y664 436 aa16.29■□□□□ 0.2
CLN3-250ENST00000636839 ITPR2Q14571 2701 aa16.29■□□□□ 0.2
CLN3-250ENST00000636839 DUXBA0A1W2PPF3 345 aa16.29■□□□□ 0.2
CLN3-250ENST00000636839 TOX4O94842 621 aa16.29■□□□□ 0.2
CLN3-250ENST00000636839 P0C879 139 aa16.29■□□□□ 0.2
CLN3-250ENST00000636839 HOXB4P17483 251 aaPredicted RBP16.29■□□□□ 0.2
CLN3-250ENST00000636839 ZNF137PP52743 207 aa16.29■□□□□ 0.2
CLN3-250ENST00000636839 Q5PR19 223 aa16.29■□□□□ 0.2
CLN3-250ENST00000636839 C1orf122Q6ZSJ8 110 aa16.29■□□□□ 0.2
CLN3-250ENST00000636839 KIR3DL3Q8N743 410 aa16.29■□□□□ 0.2
CLN3-250ENST00000636839 BEND2Q8NDZ0 799 aa16.29■□□□□ 0.2
CLN3-250ENST00000636839 OR11H6Q8NGC7 330 aa16.29■□□□□ 0.2
CLN3-250ENST00000636839 OR1S1Q8NH92 325 aa16.29■□□□□ 0.2
CLN3-250ENST00000636839 C17orf50Q8WW18 174 aa16.29■□□□□ 0.2
CLN3-250ENST00000636839 R3HDM4Q96D70 268 aa16.29■□□□□ 0.2
CLN3-250ENST00000636839 RRNAD1Q96FB5 475 aaKnown RBP16.29■□□□□ 0.2
CLN3-250ENST00000636839 NABP2Q9BQ15 211 aa16.29■□□□□ 0.2
CLN3-250ENST00000636839 NSG2Q9Y328 171 aa16.29■□□□□ 0.2
CLN3-250ENST00000636839 H0YJW9 148 aa16.28■□□□□ 0.2
CLN3-250ENST00000636839 KRTAP1-3Q8IUG1 177 aa16.28■□□□□ 0.2
CLN3-250ENST00000636839 LSM10Q969L4 123 aaKnown RBP16.28■□□□□ 0.2
CLN3-250ENST00000636839 POLR3KQ9Y2Y1 108 aaPredicted RBP16.28■□□□□ 0.2
CLN3-250ENST00000636839 PDZD2O15018 2839 aa16.28■□□□□ 0.2
CLN3-250ENST00000636839 UNC79Q9P2D8 2635 aa16.28■□□□□ 0.2
CLN3-250ENST00000636839 MARCH11A6NNE9 402 aa16.28■□□□□ 0.2
CLN3-250ENST00000636839 RNF223E7ERA6 249 aa16.28■□□□□ 0.2
CLN3-250ENST00000636839 LY6LH3BQJ8 138 aa16.28■□□□□ 0.2
CLN3-250ENST00000636839 HPRT1P00492 218 aa16.28■□□□□ 0.2
CLN3-250ENST00000636839 AP2S1P53680 142 aaPredicted RBP16.28■□□□□ 0.2
CLN3-250ENST00000636839 FGL1Q08830 312 aa16.28■□□□□ 0.2
CLN3-250ENST00000636839 ZNF546Q86UE3 836 aa16.28■□□□□ 0.2
CLN3-250ENST00000636839 TGIF2LXQ8IUE1 241 aa16.28■□□□□ 0.2
CLN3-250ENST00000636839 TCTEX1D1Q8N7M0 179 aa16.28■□□□□ 0.2
CLN3-250ENST00000636839 CD300LFQ8TDQ1 290 aa16.28■□□□□ 0.2
CLN3-250ENST00000636839 PLEKHA2Q9HB19 425 aa16.28■□□□□ 0.2
CLN3-250ENST00000636839 SLC35D1Q9NTN3 355 aa16.28■□□□□ 0.2
CLN3-250ENST00000636839 INSIG2Q9Y5U4 225 aa16.28■□□□□ 0.2
CLN3-250ENST00000636839 SRRM4A7MD48 611 aaKnown RBP16.27■□□□□ 0.2
CLN3-250ENST00000636839 K7EPK0 472 aa16.27■□□□□ 0.2
CLN3-250ENST00000636839 PITX3O75364 302 aa16.27■□□□□ 0.2
CLN3-250ENST00000636839 POLR2GP62487 172 aaKnown RBP eCLIP16.27■□□□□ 0.2
CLN3-250ENST00000636839 FAM71E2Q8N5Q1 922 aa16.27■□□□□ 0.2
CLN3-250ENST00000636839 OR5AN1Q8NGI8 311 aa16.27■□□□□ 0.2
CLN3-250ENST00000636839 THAP6Q8TBB0 222 aa16.27■□□□□ 0.2
CLN3-250ENST00000636839 LHX4Q969G2 390 aa16.27■□□□□ 0.2
CLN3-250ENST00000636839 ADTRPQ96IZ2 230 aa16.27■□□□□ 0.2
CLN3-250ENST00000636839 RITA1Q96K30 269 aa16.27■□□□□ 0.2
CLN3-250ENST00000636839 HEXA-AS1Q9H8Q6 139 aa16.27■□□□□ 0.2
CLN3-250ENST00000636839 FAM212BQ9NTI7 297 aaPredicted RBP16.27■□□□□ 0.2
CLN3-250ENST00000636839 HILPDAQ9Y5L2 63 aa16.27■□□□□ 0.2
CLN3-250ENST00000636839 MMP24Q9Y5R2 645 aa16.27■□□□□ 0.2
CLN3-250ENST00000636839 TRAV3A0A0B4J244 114 aa16.26■□□□□ 0.19
CLN3-250ENST00000636839 ODF3BA8MYP8 253 aa16.26■□□□□ 0.19
CLN3-250ENST00000636839 H7C2Y5 167 aa16.26■□□□□ 0.19
CLN3-250ENST00000636839 RBFOX2O43251 390 aaKnown RBP eCLIP16.26■□□□□ 0.19
CLN3-250ENST00000636839 SLC25A4P12235 298 aa16.26■□□□□ 0.19
CLN3-250ENST00000636839 SLC25A16P16260 332 aa16.26■□□□□ 0.19
CLN3-250ENST00000636839 TAGLNQ01995 201 aaKnown RBP16.26■□□□□ 0.19
CLN3-250ENST00000636839 THOC7Q6I9Y2 204 aaKnown RBP16.26■□□□□ 0.19
CLN3-250ENST00000636839 OR4S2Q8NH73 311 aa16.26■□□□□ 0.19
CLN3-250ENST00000636839 UNKLQ9H9P5 680 aaKnown RBP16.26■□□□□ 0.19
CLN3-250ENST00000636839 ZANQ9Y493 2812 aa16.26■□□□□ 0.19
CLN3-250ENST00000636839 PRRC2AP48634 2157 aaKnown RBP16.26■□□□□ 0.19
CLN3-250ENST00000636839 A0A1B0GU03 582 aa16.26■□□□□ 0.19
CLN3-250ENST00000636839 OR9G9P0C7N8 305 aa16.26■□□□□ 0.19
CLN3-250ENST00000636839 SMCO1Q147U7 214 aa16.26■□□□□ 0.19
CLN3-250ENST00000636839 DCUN1D4Q92564 292 aa16.26■□□□□ 0.19
CLN3-250ENST00000636839 RCL1Q9Y2P8 373 aaKnown RBP16.26■□□□□ 0.19
CLN3-250ENST00000636839 PAX8Q06710 450 aa16.25■□□□□ 0.19
CLN3-250ENST00000636839 MIDNQ504T8 468 aa16.25■□□□□ 0.19
CLN3-250ENST00000636839 PRSS54Q6PEW0 395 aa16.25■□□□□ 0.19
CLN3-250ENST00000636839 H2BFWTQ7Z2G1 175 aa16.25■□□□□ 0.19
CLN3-250ENST00000636839 LRRC75A-AS1Q8N1F1 130 aa16.25■□□□□ 0.19
CLN3-250ENST00000636839 DYNAPQ8N1N2 210 aa16.25■□□□□ 0.19
CLN3-250ENST00000636839 DMBX1Q8NFW5 382 aa16.25■□□□□ 0.19
CLN3-250ENST00000636839 TNFSF18Q9UNG2 199 aa16.25■□□□□ 0.19
CLN3-250ENST00000636839 ZNF469Q96JG9 3925 aaPredicted RBP16.25■□□□□ 0.19
CLN3-250ENST00000636839 ZFHX3Q15911 3703 aa16.25■□□□□ 0.19
CLN3-250ENST00000636839 IGHV3OR16-10A0A075B7F0 116 aa16.24■□□□□ 0.19
CLN3-250ENST00000636839 MSGN1A6NI15 193 aa16.24■□□□□ 0.19
CLN3-250ENST00000636839 HMSDA8MTL9 139 aa16.24■□□□□ 0.19
CLN3-250ENST00000636839 IL3RAP26951 378 aa16.24■□□□□ 0.19
CLN3-250ENST00000636839 HTR1DP28221 377 aa16.24■□□□□ 0.19
CLN3-250ENST00000636839 KIR2DS2P43631 304 aa16.24■□□□□ 0.19
CLN3-250ENST00000636839 NKX2-1P43699 371 aaPredicted RBP16.24■□□□□ 0.19
CLN3-250ENST00000636839 ID3Q02535 119 aa16.24■□□□□ 0.19
CLN3-250ENST00000636839 RPEQ96AT9 228 aa16.24■□□□□ 0.19
CLN3-250ENST00000636839 Q96MF0 132 aa16.24■□□□□ 0.19
CLN3-250ENST00000636839 SPIN2AQ99865 258 aa16.24■□□□□ 0.19
CLN3-250ENST00000636839 SPIN2BQ9BPZ2 258 aa16.24■□□□□ 0.19
CLN3-250ENST00000636839 IGHV1-3A0A0C4DH29 117 aa16.24■□□□□ 0.19
CLN3-250ENST00000636839 RNF222A6NCQ9 220 aa16.24■□□□□ 0.19
CLN3-250ENST00000636839 DEDDO75618 318 aa16.24■□□□□ 0.19
CLN3-250ENST00000636839 MSMBP08118 114 aa16.24■□□□□ 0.19
CLN3-250ENST00000636839 FAM71F2Q6NXP2 309 aa16.24■□□□□ 0.19
CLN3-250ENST00000636839 MOB3BQ86TA1 216 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms