RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 OR2B11Q5JQS5 317 aa14.35□□□□□ -0.11
CLN3-243ENST00000635973 ZNF660Q6AZW8 331 aaPredicted RBP14.35□□□□□ -0.11
CLN3-243ENST00000635973 ZBTB34Q8NCN2 500 aa14.35□□□□□ -0.11
CLN3-243ENST00000635973 OR6Q1Q8NGQ2 317 aa14.35□□□□□ -0.11
CLN3-243ENST00000635973 TSNAXQ99598 290 aaKnown RBP14.35□□□□□ -0.11
CLN3-243ENST00000635973 FXYD6Q9H0Q3 95 aa14.35□□□□□ -0.11
CLN3-243ENST00000635973 PLSCR3Q9NRY6 295 aa14.35□□□□□ -0.11
CLN3-243ENST00000635973 SERTAD4Q9NUC0 356 aa14.35□□□□□ -0.11
CLN3-243ENST00000635973 ZNF107Q9UII5 783 aaPredicted RBP14.35□□□□□ -0.11
CLN3-243ENST00000635973 V9GYH0 126 aa14.35□□□□□ -0.11
CLN3-243ENST00000635973 LINC00473A8K010 186 aa14.34□□□□□ -0.11
CLN3-243ENST00000635973 SHOXO15266 292 aa14.34□□□□□ -0.11
CLN3-243ENST00000635973 GSTZ1O43708 216 aaPredicted RBP14.34□□□□□ -0.11
CLN3-243ENST00000635973 FCGR3BO75015 233 aa14.34□□□□□ -0.11
CLN3-243ENST00000635973 RAB3DO95716 219 aa14.34□□□□□ -0.11
CLN3-243ENST00000635973 IGLV2-14P01704 120 aa14.34□□□□□ -0.11
CLN3-243ENST00000635973 CD28P10747 220 aa14.34□□□□□ -0.11
CLN3-243ENST00000635973 STEAP1BQ6NZ63 245 aa14.34□□□□□ -0.11
CLN3-243ENST00000635973 ZNF66Q6ZN08 573 aa14.34□□□□□ -0.11
CLN3-243ENST00000635973 SLC35E3Q7Z769 313 aa14.34□□□□□ -0.11
CLN3-243ENST00000635973 CCDC190Q86UF4 302 aa14.34□□□□□ -0.11
CLN3-243ENST00000635973 ARRDC1Q8N5I2 433 aa14.34□□□□□ -0.11
CLN3-243ENST00000635973 FAM71E2Q8N5Q1 922 aa14.34□□□□□ -0.11
CLN3-243ENST00000635973 NPBQ8NG41 125 aa14.34□□□□□ -0.11
CLN3-243ENST00000635973 OR4F17Q8NGA8 305 aa14.34□□□□□ -0.11
CLN3-243ENST00000635973 HARBI1Q96MB7 349 aa14.34□□□□□ -0.11
CLN3-243ENST00000635973 OR4F4Q96R69 305 aa14.34□□□□□ -0.11
CLN3-243ENST00000635973 RNF5Q99942 180 aa14.34□□□□□ -0.11
CLN3-243ENST00000635973 SOSTQ9BQB4 213 aa14.34□□□□□ -0.11
CLN3-243ENST00000635973 A6NHS1 94 aa14.33□□□□□ -0.12
CLN3-243ENST00000635973 G3V4G9 280 aa14.33□□□□□ -0.12
CLN3-243ENST00000635973 CRYZL1O95825 349 aa14.33□□□□□ -0.12
CLN3-243ENST00000635973 S100GP29377 79 aa14.33□□□□□ -0.12
CLN3-243ENST00000635973 CATR1Q13166 79 aa14.33□□□□□ -0.12
CLN3-243ENST00000635973 MEF2DQ14814 521 aa14.33□□□□□ -0.12
CLN3-243ENST00000635973 C5orf64Q2M2E5 130 aa14.33□□□□□ -0.12
CLN3-243ENST00000635973 AADACL3Q5VUY0 350 aa14.33□□□□□ -0.12
CLN3-243ENST00000635973 ZNF818PQ6ZRF7 136 aa14.33□□□□□ -0.12
CLN3-243ENST00000635973 NDUFA11Q86Y39 141 aa14.33□□□□□ -0.12
CLN3-243ENST00000635973 FOXRED2Q8IWF2 684 aa14.33□□□□□ -0.12
CLN3-243ENST00000635973 CMTM1Q8IZ96 169 aa14.33□□□□□ -0.12
CLN3-243ENST00000635973 Q8N402 240 aa14.33□□□□□ -0.12
CLN3-243ENST00000635973 R3HDM4Q96D70 268 aa14.33□□□□□ -0.12
CLN3-243ENST00000635973 RRHO14718 337 aa14.32□□□□□ -0.12
CLN3-243ENST00000635973 NDUFA3O95167 84 aa14.32□□□□□ -0.12
CLN3-243ENST00000635973 SPDEFO95238 335 aa14.32□□□□□ -0.12
CLN3-243ENST00000635973 CD74P04233 296 aa14.32□□□□□ -0.12
CLN3-243ENST00000635973 AKAIN1P0CW23 69 aa14.32□□□□□ -0.12
CLN3-243ENST00000635973 PGAM2P15259 253 aa14.32□□□□□ -0.12
CLN3-243ENST00000635973 PTBP1P26599 531 aaKnown RBP eCLIP14.32□□□□□ -0.12
CLN3-243ENST00000635973 RPL30P62888 115 aaKnown RBP14.32□□□□□ -0.12
CLN3-243ENST00000635973 SCGB2B2Q4G0G5 96 aa14.32□□□□□ -0.12
CLN3-243ENST00000635973 LPCAT3Q6P1A2 487 aa14.32□□□□□ -0.12
CLN3-243ENST00000635973 MFSD4AQ8N468 514 aa14.32□□□□□ -0.12
CLN3-243ENST00000635973 OR4D10Q8NGI6 311 aa14.32□□□□□ -0.12
CLN3-243ENST00000635973 OR4S2Q8NH73 311 aa14.32□□□□□ -0.12
CLN3-243ENST00000635973 DDB2Q92466 427 aa14.32□□□□□ -0.12
CLN3-243ENST00000635973 GPHA2Q96T91 129 aa14.32□□□□□ -0.12
CLN3-243ENST00000635973 THAP7Q9BT49 309 aaPredicted RBP14.32□□□□□ -0.12
CLN3-243ENST00000635973 FBXL15Q9H469 300 aa14.32□□□□□ -0.12
CLN3-243ENST00000635973 BATF3Q9NR55 127 aa14.32□□□□□ -0.12
CLN3-243ENST00000635973 METTL1Q9UBP6 276 aaKnown RBP14.32□□□□□ -0.12
CLN3-243ENST00000635973 DISC1C4P0D8 188 aa14.31□□□□□ -0.12
CLN3-243ENST00000635973 SLC25A17O43808 307 aa14.31□□□□□ -0.12
CLN3-243ENST00000635973 GNRHRP30968 328 aa14.31□□□□□ -0.12
CLN3-243ENST00000635973 KIR2DS2P43631 304 aa14.31□□□□□ -0.12
CLN3-243ENST00000635973 PSG5Q15238 335 aa14.31□□□□□ -0.12
CLN3-243ENST00000635973 ZNF79Q15937 498 aa14.31□□□□□ -0.12
CLN3-243ENST00000635973 CNPY1Q3B7I2 92 aa14.31□□□□□ -0.12
CLN3-243ENST00000635973 LIN54Q6MZP7 749 aa14.31□□□□□ -0.12
CLN3-243ENST00000635973 FAAP20Q6NZ36 180 aa14.31□□□□□ -0.12
CLN3-243ENST00000635973 SLC38A6Q8IZM9 456 aa14.31□□□□□ -0.12
CLN3-243ENST00000635973 POC5Q8NA72 575 aa14.31□□□□□ -0.12
CLN3-243ENST00000635973 OR51H1Q8NH63 302 aa14.31□□□□□ -0.12
CLN3-243ENST00000635973 CITED2Q99967 270 aaPredicted RBP14.31□□□□□ -0.12
CLN3-243ENST00000635973 GPR31O00270 319 aa14.3□□□□□ -0.12
CLN3-243ENST00000635973 IGHG2P01859 326 aa14.3□□□□□ -0.12
CLN3-243ENST00000635973 HLA-DRB1P01911 266 aa14.3□□□□□ -0.12
CLN3-243ENST00000635973 RLN1P04808 185 aa14.3□□□□□ -0.12
CLN3-243ENST00000635973 ETV6P41212 452 aa14.3□□□□□ -0.12
CLN3-243ENST00000635973 LGALS7P47929 136 aa14.3□□□□□ -0.12
CLN3-243ENST00000635973 PPP5CP53041 499 aa14.3□□□□□ -0.12
CLN3-243ENST00000635973 AP3S2P59780 193 aa14.3□□□□□ -0.12
CLN3-243ENST00000635973 EIF4EBP1Q13541 118 aaPredicted RBP14.3□□□□□ -0.12
CLN3-243ENST00000635973 BEAN1Q3B7T3 259 aa14.3□□□□□ -0.12
CLN3-243ENST00000635973 PHLDA2Q53GA4 152 aa14.3□□□□□ -0.12
CLN3-243ENST00000635973 TMEM177Q53S58 311 aa14.3□□□□□ -0.12
CLN3-243ENST00000635973 CENPVQ7Z7K6 275 aaPredicted RBP14.3□□□□□ -0.12
CLN3-243ENST00000635973 OR4C16Q8NGL9 310 aa14.3□□□□□ -0.12
CLN3-243ENST00000635973 HSPB9Q9BQS6 159 aa14.3□□□□□ -0.12
CLN3-243ENST00000635973 ANKRD20A5PA0PJZ0 165 aa14.29□□□□□ -0.12
CLN3-243ENST00000635973 AP4M1O00189 453 aa14.29□□□□□ -0.12
CLN3-243ENST00000635973 VMA21Q3ZAQ7 101 aa14.29□□□□□ -0.12
CLN3-243ENST00000635973 SAMD5Q5TGI4 173 aa14.29□□□□□ -0.12
CLN3-243ENST00000635973 OR5AU1Q8NGC0 362 aa14.29□□□□□ -0.12
CLN3-243ENST00000635973 OSR1Q8TAX0 266 aaPredicted RBP14.29□□□□□ -0.12
CLN3-243ENST00000635973 ABHD5Q8WTS1 349 aa14.29□□□□□ -0.12
CLN3-243ENST00000635973 NOL4LQ96MY1 436 aaPredicted RBP14.29□□□□□ -0.12
CLN3-243ENST00000635973 CLCC1Q96S66 551 aa14.29□□□□□ -0.12
CLN3-243ENST00000635973 SRRQ9GZT4 340 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms