RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 SCN3BQ9NY72 215 aa18.94■□□□□ 0.62
PTPRF-216ENST00000617451 TRBV6-7A0A0A0MS04 114 aa18.93■□□□□ 0.62
PTPRF-216ENST00000617451 IZUMO1RA6ND01 250 aa18.93■□□□□ 0.62
PTPRF-216ENST00000617451 MSGN1A6NI15 193 aa18.93■□□□□ 0.62
PTPRF-216ENST00000617451 DENRO43583 198 aaKnown RBP18.93■□□□□ 0.62
PTPRF-216ENST00000617451 OR2A4O95047 310 aa18.93■□□□□ 0.62
PTPRF-216ENST00000617451 IFNA6P05013 189 aa18.93■□□□□ 0.62
PTPRF-216ENST00000617451 APELAP0DMC3 54 aa18.93■□□□□ 0.62
PTPRF-216ENST00000617451 MECP2P51608 486 aaKnown RBP18.93■□□□□ 0.62
PTPRF-216ENST00000617451 CBX3Q13185 183 aa18.93■□□□□ 0.62
PTPRF-216ENST00000617451 TRAM1Q15629 374 aa18.93■□□□□ 0.62
PTPRF-216ENST00000617451 RTL8BQ17RB0 113 aa18.93■□□□□ 0.62
PTPRF-216ENST00000617451 RPEL1Q2QD12 228 aa18.93■□□□□ 0.62
PTPRF-216ENST00000617451 ADAD2Q8NCV1 583 aaKnown RBP18.93■□□□□ 0.62
PTPRF-216ENST00000617451 DIRAS3O95661 229 aa18.92■□□□□ 0.62
PTPRF-216ENST00000617451 FCGR3AP08637 254 aa18.92■□□□□ 0.62
PTPRF-216ENST00000617451 GSTT2P0CG29 244 aa18.92■□□□□ 0.62
PTPRF-216ENST00000617451 GSTT2BP0CG30 244 aa18.92■□□□□ 0.62
PTPRF-216ENST00000617451 HSMCR30P0CW71 290 aa18.92■□□□□ 0.62
PTPRF-216ENST00000617451 MRPS15P82914 257 aaKnown RBP18.92■□□□□ 0.62
PTPRF-216ENST00000617451 PLA2G7Q13093 441 aa18.92■□□□□ 0.62
PTPRF-216ENST00000617451 SNAPC3Q92966 411 aa18.92■□□□□ 0.62
PTPRF-216ENST00000617451 PHB2Q99623 299 aa18.92■□□□□ 0.62
PTPRF-216ENST00000617451 PLECQ15149 4684 aaKnown RBP18.91■□□□□ 0.62
PTPRF-216ENST00000617451 TMEM272A0A1B0GTI8 110 aa18.91■□□□□ 0.62
PTPRF-216ENST00000617451 RRASP10301 218 aa18.91■□□□□ 0.62
PTPRF-216ENST00000617451 PSMA1P25786 263 aaKnown RBP18.91■□□□□ 0.62
PTPRF-216ENST00000617451 CALRP27797 417 aaKnown RBP18.91■□□□□ 0.62
PTPRF-216ENST00000617451 RANBP1P43487 201 aa18.91■□□□□ 0.62
PTPRF-216ENST00000617451 TEX45Q8NA69 505 aa18.91■□□□□ 0.62
PTPRF-216ENST00000617451 RAB3CQ96E17 227 aa18.91■□□□□ 0.62
PTPRF-216ENST00000617451 VCXQ9H320 206 aa18.91■□□□□ 0.62
PTPRF-216ENST00000617451 RAB22AQ9UL26 194 aa18.91■□□□□ 0.62
PTPRF-216ENST00000617451 V9GY05 133 aa18.91■□□□□ 0.62
PTPRF-216ENST00000617451 OR9G9P0C7N8 305 aa18.9■□□□□ 0.62
PTPRF-216ENST00000617451 UBE2KP61086 200 aa18.9■□□□□ 0.62
PTPRF-216ENST00000617451 PRSS8Q16651 343 aa18.9■□□□□ 0.62
PTPRF-216ENST00000617451 OR2K2Q8NGT1 345 aa18.9■□□□□ 0.62
PTPRF-216ENST00000617451 DDB2Q92466 427 aa18.9■□□□□ 0.62
PTPRF-216ENST00000617451 A0A0B4J203 849 aa18.89■□□□□ 0.61
PTPRF-216ENST00000617451 PSMD7P51665 324 aa18.89■□□□□ 0.61
PTPRF-216ENST00000617451 FABP5Q01469 135 aa18.89■□□□□ 0.61
PTPRF-216ENST00000617451 TNXAQ16473 311 aa18.89■□□□□ 0.61
PTPRF-216ENST00000617451 VMA21Q3ZAQ7 101 aa18.89■□□□□ 0.61
PTPRF-216ENST00000617451 LINC00322Q6ZN03 302 aaPredicted RBP18.89■□□□□ 0.61
PTPRF-216ENST00000617451 DUSP21Q9H596 190 aa18.89■□□□□ 0.61
PTPRF-216ENST00000617451 AKIP1Q9NQ31 210 aa18.89■□□□□ 0.61
PTPRF-216ENST00000617451 PEMTQ9UBM1 199 aa18.89■□□□□ 0.61
PTPRF-216ENST00000617451 SHISA3A0PJX4 238 aa18.88■□□□□ 0.61
PTPRF-216ENST00000617451 AIREO43918 545 aa18.88■□□□□ 0.61
PTPRF-216ENST00000617451 DUTP33316 252 aaKnown RBP18.88■□□□□ 0.61
PTPRF-216ENST00000617451 MLLT11Q13015 90 aaPredicted RBP18.88■□□□□ 0.61
PTPRF-216ENST00000617451 HES5Q5TA89 166 aa18.88■□□□□ 0.61
PTPRF-216ENST00000617451 IDO2Q6ZQW0 420 aa18.88■□□□□ 0.61
PTPRF-216ENST00000617451 SRSF12Q8WXF0 261 aaKnown RBP18.88■□□□□ 0.61
PTPRF-216ENST00000617451 MAFIPQ8WZ33 124 aa18.88■□□□□ 0.61
PTPRF-216ENST00000617451 ADTRPQ96IZ2 230 aa18.88■□□□□ 0.61
PTPRF-216ENST00000617451 ZNF230Q9UIE0 474 aaPredicted RBP18.88■□□□□ 0.61
PTPRF-216ENST00000617451 TPRKBQ9Y3C4 175 aa18.88■□□□□ 0.61
PTPRF-216ENST00000617451 RBM7Q9Y580 266 aaKnown RBP18.88■□□□□ 0.61
PTPRF-216ENST00000617451 FAM223BA6NKX1 122 aa18.87■□□□□ 0.61
PTPRF-216ENST00000617451 BMPR1BO00238 502 aa18.87■□□□□ 0.61
PTPRF-216ENST00000617451 CRYZL1O95825 349 aa18.87■□□□□ 0.61
PTPRF-216ENST00000617451 GNB3P16520 340 aa18.87■□□□□ 0.61
PTPRF-216ENST00000617451 RHOGP84095 191 aa18.87■□□□□ 0.61
PTPRF-216ENST00000617451 FAM223AQ8IWN6 122 aa18.87■□□□□ 0.61
PTPRF-216ENST00000617451 OR10R2Q8NGX6 335 aa18.87■□□□□ 0.61
PTPRF-216ENST00000617451 GINS4Q9BRT9 223 aa18.87■□□□□ 0.61
PTPRF-216ENST00000617451 HIPK2Q9H2X6 1198 aa18.87■□□□□ 0.61
PTPRF-216ENST00000617451 CEPT1Q9Y6K0 416 aa18.87■□□□□ 0.61
PTPRF-216ENST00000617451 TRBV9A0A0B4J1U6 114 aa18.86■□□□□ 0.61
PTPRF-216ENST00000617451 LINC00473A8K010 186 aa18.86■□□□□ 0.61
PTPRF-216ENST00000617451 MFNGO00587 321 aa18.86■□□□□ 0.61
PTPRF-216ENST00000617451 MPPED1O15442 326 aa18.86■□□□□ 0.61
PTPRF-216ENST00000617451 PRH1P02810 166 aa18.86■□□□□ 0.61
PTPRF-216ENST00000617451 ZNF45Q02386 682 aa18.86■□□□□ 0.61
PTPRF-216ENST00000617451 OSR1Q8TAX0 266 aaPredicted RBP18.86■□□□□ 0.61
PTPRF-216ENST00000617451 ACOT12Q8WYK0 555 aa18.86■□□□□ 0.61
PTPRF-216ENST00000617451 PLEKHA3Q9HB20 300 aa18.86■□□□□ 0.61
PTPRF-216ENST00000617451 RETNQ9HD89 108 aa18.86■□□□□ 0.61
PTPRF-216ENST00000617451 ACOT13Q9NPJ3 140 aa18.86■□□□□ 0.61
PTPRF-216ENST00000617451 RAB27BO00194 218 aa18.85■□□□□ 0.61
PTPRF-216ENST00000617451 RGS10O43665 173 aa18.85■□□□□ 0.61
PTPRF-216ENST00000617451 GADD45AP24522 165 aa18.85■□□□□ 0.61
PTPRF-216ENST00000617451 CD81P60033 236 aa18.85■□□□□ 0.61
PTPRF-216ENST00000617451 ATP5G2Q06055 141 aa18.85■□□□□ 0.61
PTPRF-216ENST00000617451 EXOSC2Q13868 293 aaKnown RBP18.85■□□□□ 0.61
PTPRF-216ENST00000617451 CD300EQ496F6 205 aaPredicted RBP18.85■□□□□ 0.61
PTPRF-216ENST00000617451 LAX1Q8IWV1 398 aa18.85■□□□□ 0.61
PTPRF-216ENST00000617451 H1FOOQ8IZA3 346 aaPredicted RBP18.85■□□□□ 0.61
PTPRF-216ENST00000617451 ZNF430Q9H8G1 570 aaPredicted RBP18.85■□□□□ 0.61
PTPRF-216ENST00000617451 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP18.84■□□□□ 0.61
PTPRF-216ENST00000617451 ZNF785A8K8V0 405 aa18.84■□□□□ 0.61
PTPRF-216ENST00000617451 HIST1H1DP16402 221 aaKnown RBP18.84■□□□□ 0.61
PTPRF-216ENST00000617451 Q6ZS49 121 aa18.84■□□□□ 0.61
PTPRF-216ENST00000617451 MGLLQ99685 303 aa18.84■□□□□ 0.61
PTPRF-216ENST00000617451 SPIN2AQ99865 258 aa18.84■□□□□ 0.61
PTPRF-216ENST00000617451 SPIN2BQ9BPZ2 258 aa18.84■□□□□ 0.61
PTPRF-216ENST00000617451 NEURL2Q9BR09 285 aa18.84■□□□□ 0.61
PTPRF-216ENST00000617451 CENPOQ9BU64 300 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms