RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 TBCEQ15813 527 aaPredicted RBP4.79□□□□□ -1.64
CUX1-220ENST00000607092 NEDD8Q15843 81 aa4.79□□□□□ -1.64
CUX1-220ENST00000607092 RTL8BQ17RB0 113 aa4.79□□□□□ -1.64
CUX1-220ENST00000607092 FAM223AQ8IWN6 122 aa4.79□□□□□ -1.64
CUX1-220ENST00000607092 MS4A15Q8N5U1 240 aa4.79□□□□□ -1.64
CUX1-220ENST00000607092 LINC00476Q8WZB0 136 aa4.79□□□□□ -1.64
CUX1-220ENST00000607092 PTX4Q96A99 478 aa4.79□□□□□ -1.64
CUX1-220ENST00000607092 RITA1Q96K30 269 aa4.79□□□□□ -1.64
CUX1-220ENST00000607092 CCDC140Q96MF4 163 aa4.79□□□□□ -1.64
CUX1-220ENST00000607092 NEURL2Q9BR09 285 aa4.79□□□□□ -1.64
CUX1-220ENST00000607092 URM1Q9BTM9 101 aaKnown RBP4.79□□□□□ -1.64
CUX1-220ENST00000607092 TMEM59Q9BXS4 323 aa4.79□□□□□ -1.64
CUX1-220ENST00000607092 CCDC90BQ9GZT6 254 aa4.79□□□□□ -1.64
CUX1-220ENST00000607092 HIPK2Q9H2X6 1198 aa4.79□□□□□ -1.64
CUX1-220ENST00000607092 AMBNQ9NP70 447 aa4.79□□□□□ -1.64
CUX1-220ENST00000607092 GAR1Q9NY12 217 aaKnown RBP4.79□□□□□ -1.64
CUX1-220ENST00000607092 COA4Q9NYJ1 87 aa4.79□□□□□ -1.64
CUX1-220ENST00000607092 ZNF581Q9P0T4 197 aa4.79□□□□□ -1.64
CUX1-220ENST00000607092 DIMT1Q9UNQ2 313 aaKnown RBP4.79□□□□□ -1.64
CUX1-220ENST00000607092 FBXO7Q9Y3I1 522 aa4.79□□□□□ -1.64
CUX1-220ENST00000607092 TRBV5-7A0A0A0MS05 114 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 H3BMQ9 156 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 FCN1O00602 326 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 ACTL6BO94805 426 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 NAPSAO96009 420 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 DHFRP00374 187 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 CEACAM6P40199 344 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 RPS27AP62979 156 aaKnown RBP4.78□□□□□ -1.64
CUX1-220ENST00000607092 MRPS15P82914 257 aaKnown RBP4.78□□□□□ -1.64
CUX1-220ENST00000607092 SMN1Q16637 294 aaKnown RBP4.78□□□□□ -1.64
CUX1-220ENST00000607092 VMA21Q3ZAQ7 101 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 TIMM50Q3ZCQ8 353 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 RPL39P5Q59GN2 51 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 GPR107Q5VW38 600 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 OR4A47Q6IF82 309 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 ZNF880Q6PDB4 577 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 LINC00322Q6ZN03 302 aaPredicted RBP4.78□□□□□ -1.64
CUX1-220ENST00000607092 AHSA2Q719I0 299 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 HAPLN4Q86UW8 402 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 NECAP1Q8NC96 275 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 OR5T1Q8NG75 326 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 SETD6Q8TBK2 473 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 CASTOR1Q8WTX7 329 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 PHYHIPQ92561 330 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 YIPF6Q96EC8 236 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 TMEM80Q96HE8 168 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 ADTRPQ96IZ2 230 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 CLCC1Q96S66 551 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 PHB2Q99623 299 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 SPIN2AQ99865 258 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 SPIN2BQ9BPZ2 258 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 AGMATQ9BSE5 352 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 THAP7Q9BT49 309 aaPredicted RBP4.78□□□□□ -1.64
CUX1-220ENST00000607092 FAM103A1Q9BTL3 118 aaKnown RBP4.78□□□□□ -1.64
CUX1-220ENST00000607092 ST6GALNAC5Q9BVH7 336 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 FUNDC2Q9BWH2 189 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 BANF2Q9H503 90 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 C12orf4Q9NQ89 552 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 PLEKHJ1Q9NW61 149 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 TP53TG1Q9Y2A0 90 aa4.78□□□□□ -1.64
CUX1-220ENST00000607092 TRAV8-7A0A075B6U6 113 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 CXorf65A6NEN9 183 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 OR11H12B2RN74 326 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 UBE2CO00762 179 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 MYL12BO14950 172 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 GGCTO75223 188 aaKnown RBP4.77□□□□□ -1.65
CUX1-220ENST00000607092 GABARAPO95166 117 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 LY6G6CO95867 125 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 CSN3P07498 182 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 OR9G9P0C7N8 305 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 ETV1P50549 477 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 MECP2P51608 486 aaKnown RBP4.77□□□□□ -1.65
CUX1-220ENST00000607092 HLA-DRB3P79483 266 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 ATP5G2Q06055 141 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 CTF1Q16619 201 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 TMEM177Q53S58 311 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 SIGIRRQ6IA17 410 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 GLDNQ6ZMI3 551 aaPredicted RBP4.77□□□□□ -1.65
CUX1-220ENST00000607092 IL34Q6ZMJ4 242 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 ZNF367Q7RTV3 350 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 CROCCP3Q8IVE0 287 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 NANOGP1Q8N7R0 232 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 TEX45Q8NA69 505 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 OR6M1Q8NGM8 313 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 MARC2Q969Z3 335 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 ABHD14BQ96IU4 210 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 HARBI1Q96MB7 349 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 DERL3Q96Q80 235 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 FAAP24Q9BTP7 215 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 GGTLC1Q9BX51 225 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 TM2D1Q9BX74 207 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 C11orf54Q9H0W9 315 aaPredicted RBP4.77□□□□□ -1.65
CUX1-220ENST00000607092 SRD5A3Q9H8P0 318 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 PLEKHA3Q9HB20 300 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 ZC4H2Q9NQZ6 224 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 SLC35D1Q9NTN3 355 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 PRR13Q9NZ81 148 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 HSF4Q9ULV5 492 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 GAB2Q9UQC2 676 aa4.77□□□□□ -1.65
CUX1-220ENST00000607092 HYDINQ4G0P3 5121 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms