RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 ATG5Q9H1Y0 275 aa9.59□□□□□ -0.87
TRIM28-212ENST00000597995 RANGRFQ9HD47 186 aaPredicted RBP9.59□□□□□ -0.87
TRIM28-212ENST00000597995 SDHAF2Q9NX18 166 aa9.59□□□□□ -0.87
TRIM28-212ENST00000597995 DAPK2Q9UIK4 370 aa9.59□□□□□ -0.87
TRIM28-212ENST00000597995 ZNF221Q9UK13 617 aa9.59□□□□□ -0.87
TRIM28-212ENST00000597995 A3GALT2U3KPV4 340 aa9.59□□□□□ -0.87
TRIM28-212ENST00000597995 LYSTQ99698 3801 aa9.59□□□□□ -0.87
TRIM28-212ENST00000597995 BIRC6Q9NR09 4857 aa9.59□□□□□ -0.87
TRIM28-212ENST00000597995 METTL21EPA6NDL7 271 aa9.58□□□□□ -0.88
TRIM28-212ENST00000597995 H7C2Y5 167 aa9.58□□□□□ -0.88
TRIM28-212ENST00000597995 ZP3P21754 424 aa9.58□□□□□ -0.88
TRIM28-212ENST00000597995 GADD45AP24522 165 aa9.58□□□□□ -0.88
TRIM28-212ENST00000597995 SDC2P34741 201 aa9.58□□□□□ -0.88
TRIM28-212ENST00000597995 SERPINB10P48595 397 aa9.58□□□□□ -0.88
TRIM28-212ENST00000597995 TPPP2P59282 170 aa9.58□□□□□ -0.88
TRIM28-212ENST00000597995 SSBP2P81877 361 aaPredicted RBP9.58□□□□□ -0.88
TRIM28-212ENST00000597995 CDNFQ49AH0 187 aa9.58□□□□□ -0.88
TRIM28-212ENST00000597995 Q6ZS49 121 aa9.58□□□□□ -0.88
TRIM28-212ENST00000597995 TPRA1Q86W33 373 aa9.58□□□□□ -0.88
TRIM28-212ENST00000597995 LFNGQ8NES3 379 aa9.58□□□□□ -0.88
TRIM28-212ENST00000597995 MS4A10Q96PG2 267 aa9.58□□□□□ -0.88
TRIM28-212ENST00000597995 SPATA25Q9BR10 227 aa9.58□□□□□ -0.88
TRIM28-212ENST00000597995 SSR3Q9UNL2 185 aa9.58□□□□□ -0.88
TRIM28-212ENST00000597995 RRP15Q9Y3B9 282 aaKnown RBP9.58□□□□□ -0.88
TRIM28-212ENST00000597995 CSMD3Q7Z407 3707 aa9.58□□□□□ -0.88
TRIM28-212ENST00000597995 EPPK1P58107 5090 aaKnown RBP9.58□□□□□ -0.88
TRIM28-212ENST00000597995 TNCP24821 2201 aa9.58□□□□□ -0.88
TRIM28-212ENST00000597995 STARD9Q9P2P6 4700 aa9.57□□□□□ -0.88
TRIM28-212ENST00000597995 H0Y980 276 aa9.57□□□□□ -0.88
TRIM28-212ENST00000597995 H3BUA1 57 aa9.57□□□□□ -0.88
TRIM28-212ENST00000597995 M0R1X1 148 aa9.57□□□□□ -0.88
TRIM28-212ENST00000597995 DIRAS3O95661 229 aa9.57□□□□□ -0.88
TRIM28-212ENST00000597995 IGLV2-23P01705 113 aa9.57□□□□□ -0.88
TRIM28-212ENST00000597995 TRGV3P03979 118 aa9.57□□□□□ -0.88
TRIM28-212ENST00000597995 MRPS15P82914 257 aaKnown RBP9.57□□□□□ -0.88
TRIM28-212ENST00000597995 ARFRP1Q13795 201 aa9.57□□□□□ -0.88
TRIM28-212ENST00000597995 NEDD8Q15843 81 aa9.57□□□□□ -0.88
TRIM28-212ENST00000597995 KCTD21Q4G0X4 260 aa9.57□□□□□ -0.88
TRIM28-212ENST00000597995 SFXN4Q6P4A7 337 aa9.57□□□□□ -0.88
TRIM28-212ENST00000597995 H1FOOQ8IZA3 346 aaPredicted RBP9.57□□□□□ -0.88
TRIM28-212ENST00000597995 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.57□□□□□ -0.88
TRIM28-212ENST00000597995 OR5H6Q8NGV6 325 aa9.57□□□□□ -0.88
TRIM28-212ENST00000597995 OR10J5Q8NHC4 309 aa9.57□□□□□ -0.88
TRIM28-212ENST00000597995 LGALS14Q8TCE9 139 aa9.57□□□□□ -0.88
TRIM28-212ENST00000597995 CLCC1Q96S66 551 aa9.57□□□□□ -0.88
TRIM28-212ENST00000597995 FAM103A1Q9BTL3 118 aaKnown RBP9.57□□□□□ -0.88
TRIM28-212ENST00000597995 CENPOQ9BU64 300 aa9.57□□□□□ -0.88
TRIM28-212ENST00000597995 RSRP1Q9BUV0 290 aa9.57□□□□□ -0.88
TRIM28-212ENST00000597995 OR2D2Q9H210 308 aa9.57□□□□□ -0.88
TRIM28-212ENST00000597995 METTL1Q9UBP6 276 aaKnown RBP9.57□□□□□ -0.88
TRIM28-212ENST00000597995 A0A0G2JLM5 398 aa9.56□□□□□ -0.88
TRIM28-212ENST00000597995 SRRM4A7MD48 611 aaKnown RBP9.56□□□□□ -0.88
TRIM28-212ENST00000597995 SSX5O60225 188 aa9.56□□□□□ -0.88
TRIM28-212ENST00000597995 SPDEFO95238 335 aa9.56□□□□□ -0.88
TRIM28-212ENST00000597995 CA2P00918 260 aa9.56□□□□□ -0.88
TRIM28-212ENST00000597995 IFNA6P05013 189 aa9.56□□□□□ -0.88
TRIM28-212ENST00000597995 CRYGBP07316 175 aa9.56□□□□□ -0.88
TRIM28-212ENST00000597995 DTYMKP23919 212 aa9.56□□□□□ -0.88
TRIM28-212ENST00000597995 RPS16P62249 146 aaKnown RBP9.56□□□□□ -0.88
TRIM28-212ENST00000597995 MXD1Q05195 221 aa9.56□□□□□ -0.88
TRIM28-212ENST00000597995 PJVKQ0ZLH3 352 aa9.56□□□□□ -0.88
TRIM28-212ENST00000597995 KLF5Q13887 457 aaPredicted RBP9.56□□□□□ -0.88
TRIM28-212ENST00000597995 HAGHQ16775 308 aa9.56□□□□□ -0.88
TRIM28-212ENST00000597995 MRGPRG-AS1Q2M3A8 158 aa9.56□□□□□ -0.88
TRIM28-212ENST00000597995 HACD4Q5VWC8 232 aa9.56□□□□□ -0.88
TRIM28-212ENST00000597995 HAPLN4Q86UW8 402 aa9.56□□□□□ -0.88
TRIM28-212ENST00000597995 PDPNQ86YL7 162 aa9.56□□□□□ -0.88
TRIM28-212ENST00000597995 NUDCD2Q8WVJ2 157 aa9.56□□□□□ -0.88
TRIM28-212ENST00000597995 SLC25A38Q96DW6 304 aa9.56□□□□□ -0.88
TRIM28-212ENST00000597995 TSNAXQ99598 290 aaKnown RBP9.56□□□□□ -0.88
TRIM28-212ENST00000597995 SLC35D1Q9NTN3 355 aa9.56□□□□□ -0.88
TRIM28-212ENST00000597995 LOC100506127A0A0U1RQW1 187 aa9.55□□□□□ -0.88
TRIM28-212ENST00000597995 C13orf42A0A1B0GVH6 325 aa9.55□□□□□ -0.88
TRIM28-212ENST00000597995 TMEM235A6NFC5 223 aa9.55□□□□□ -0.88
TRIM28-212ENST00000597995 SLC25A17O43808 307 aa9.55□□□□□ -0.88
TRIM28-212ENST00000597995 BRI3O95415 125 aa9.55□□□□□ -0.88
TRIM28-212ENST00000597995 CD36P16671 472 aa9.55□□□□□ -0.88
TRIM28-212ENST00000597995 TGFBR1P36897 503 aa9.55□□□□□ -0.88
TRIM28-212ENST00000597995 TALDO1P37837 337 aa9.55□□□□□ -0.88
TRIM28-212ENST00000597995 FXYD3Q14802 87 aa9.55□□□□□ -0.88
TRIM28-212ENST00000597995 ADAMTSL5Q6ZMM2 481 aa9.55□□□□□ -0.88
TRIM28-212ENST00000597995 POC5Q8NA72 575 aa9.55□□□□□ -0.88
TRIM28-212ENST00000597995 OR9G4Q8NGQ1 327 aa9.55□□□□□ -0.88
TRIM28-212ENST00000597995 DDB2Q92466 427 aa9.55□□□□□ -0.88
TRIM28-212ENST00000597995 TMEM68Q96MH6 324 aa9.55□□□□□ -0.88
TRIM28-212ENST00000597995 ST6GALNAC5Q9BVH7 336 aa9.55□□□□□ -0.88
TRIM28-212ENST00000597995 SIGLEC8Q9NYZ4 499 aa9.55□□□□□ -0.88
TRIM28-212ENST00000597995 LINC00473A8K010 186 aa9.54□□□□□ -0.88
TRIM28-212ENST00000597995 IGLV2-14P01704 120 aa9.54□□□□□ -0.88
TRIM28-212ENST00000597995 APOA2P02652 100 aa9.54□□□□□ -0.88
TRIM28-212ENST00000597995 DUTP33316 252 aaKnown RBP9.54□□□□□ -0.88
TRIM28-212ENST00000597995 IL34Q6ZMJ4 242 aa9.54□□□□□ -0.88
TRIM28-212ENST00000597995 BVESQ8NE79 360 aa9.54□□□□□ -0.88
TRIM28-212ENST00000597995 IL17DQ8TAD2 202 aa9.54□□□□□ -0.88
TRIM28-212ENST00000597995 GINS4Q9BRT9 223 aa9.54□□□□□ -0.88
TRIM28-212ENST00000597995 THAP7Q9BT49 309 aaPredicted RBP9.54□□□□□ -0.88
TRIM28-212ENST00000597995 ZNF355PQ9NSJ1 428 aa9.54□□□□□ -0.88
TRIM28-212ENST00000597995 RHBDL2Q9NX52 303 aa9.54□□□□□ -0.88
TRIM28-212ENST00000597995 IGKV1D-13A0A0B4J2D9 117 aa9.53□□□□□ -0.88
TRIM28-212ENST00000597995 J3QRK9 145 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms