RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 IFT46Q9NQC8 304 aa12.65□□□□□ -0.38
TRIM28-206ENST00000595974 RBMX2Q9Y388 322 aaKnown RBP12.65□□□□□ -0.38
TRIM28-206ENST00000595974 PRELID3BQ9Y3B1 194 aa12.65□□□□□ -0.38
TRIM28-206ENST00000595974 NUBP2Q9Y5Y2 271 aa12.65□□□□□ -0.38
TRIM28-206ENST00000595974 A0A1W2PN81 502 aa12.64□□□□□ -0.39
TRIM28-206ENST00000595974 CCL24O00175 119 aa12.64□□□□□ -0.39
TRIM28-206ENST00000595974 CRYZL1O95825 349 aa12.64□□□□□ -0.39
TRIM28-206ENST00000595974 APOA1P02647 267 aa12.64□□□□□ -0.39
TRIM28-206ENST00000595974 CRYGBP07316 175 aa12.64□□□□□ -0.39
TRIM28-206ENST00000595974 EGR2P11161 476 aaPredicted RBP12.64□□□□□ -0.39
TRIM28-206ENST00000595974 CHRNA7P36544 502 aa12.64□□□□□ -0.39
TRIM28-206ENST00000595974 MSMO1Q15800 293 aa12.64□□□□□ -0.39
TRIM28-206ENST00000595974 CTF1Q16619 201 aa12.64□□□□□ -0.39
TRIM28-206ENST00000595974 AKIRIN2Q53H80 203 aa12.64□□□□□ -0.39
TRIM28-206ENST00000595974 PYHIN1Q6K0P9 492 aa12.64□□□□□ -0.39
TRIM28-206ENST00000595974 OVCH2Q7RTZ1 564 aa12.64□□□□□ -0.39
TRIM28-206ENST00000595974 OR5AP2Q8NGF4 316 aa12.64□□□□□ -0.39
TRIM28-206ENST00000595974 OSR1Q8TAX0 266 aaPredicted RBP12.64□□□□□ -0.39
TRIM28-206ENST00000595974 SNAPC3Q92966 411 aa12.64□□□□□ -0.39
TRIM28-206ENST00000595974 UBE2E2Q96LR5 201 aa12.64□□□□□ -0.39
TRIM28-206ENST00000595974 HSD17B10Q99714 261 aaKnown RBP12.64□□□□□ -0.39
TRIM28-206ENST00000595974 KLK15Q9H2R5 256 aa12.64□□□□□ -0.39
TRIM28-206ENST00000595974 MRPS7Q9Y2R9 242 aaKnown RBP12.64□□□□□ -0.39
TRIM28-206ENST00000595974 A3GALT2U3KPV4 340 aa12.64□□□□□ -0.39
TRIM28-206ENST00000595974 IGLV2-14P01704 120 aa12.63□□□□□ -0.39
TRIM28-206ENST00000595974 EIF4EP06730 217 aaKnown RBP12.63□□□□□ -0.39
TRIM28-206ENST00000595974 FCGR2CP31995 323 aa12.63□□□□□ -0.39
TRIM28-206ENST00000595974 RAB9AP51151 201 aa12.63□□□□□ -0.39
TRIM28-206ENST00000595974 RORCP51449 518 aa12.63□□□□□ -0.39
TRIM28-206ENST00000595974 UBE2KP61086 200 aa12.63□□□□□ -0.39
TRIM28-206ENST00000595974 FXYD3Q14802 87 aa12.63□□□□□ -0.39
TRIM28-206ENST00000595974 DEFB136Q30KP8 78 aa12.63□□□□□ -0.39
TRIM28-206ENST00000595974 VMA21Q3ZAQ7 101 aa12.63□□□□□ -0.39
TRIM28-206ENST00000595974 ACTBL2Q562R1 376 aa12.63□□□□□ -0.39
TRIM28-206ENST00000595974 UNQ5815/PRO19632Q6UWF5 114 aa12.63□□□□□ -0.39
TRIM28-206ENST00000595974 ZNF491Q8N8L2 437 aa12.63□□□□□ -0.39
TRIM28-206ENST00000595974 OR5M8Q8NGP6 311 aa12.63□□□□□ -0.39
TRIM28-206ENST00000595974 GRPEL2Q8TAA5 225 aa12.63□□□□□ -0.39
TRIM28-206ENST00000595974 DUX3Q96PT4 197 aa12.63□□□□□ -0.39
TRIM28-206ENST00000595974 FAM103A1Q9BTL3 118 aaKnown RBP12.63□□□□□ -0.39
TRIM28-206ENST00000595974 MCRIP2Q9BUT9 160 aaKnown RBP12.63□□□□□ -0.39
TRIM28-206ENST00000595974 NAA50Q9GZZ1 169 aaKnown RBP12.63□□□□□ -0.39
TRIM28-206ENST00000595974 COMMD3Q9UBI1 195 aa12.63□□□□□ -0.39
TRIM28-206ENST00000595974 ANAPC10Q9UM13 185 aa12.63□□□□□ -0.39
TRIM28-206ENST00000595974 VSIG4Q9Y279 399 aa12.63□□□□□ -0.39
TRIM28-206ENST00000595974 MEIS3P1A6NDR6 274 aa12.62□□□□□ -0.39
TRIM28-206ENST00000595974 SRRM4A7MD48 611 aaKnown RBP12.62□□□□□ -0.39
TRIM28-206ENST00000595974 ARPC1BO15143 372 aaKnown RBP12.62□□□□□ -0.39
TRIM28-206ENST00000595974 SOX15O60248 233 aa12.62□□□□□ -0.39
TRIM28-206ENST00000595974 PPYP01298 95 aa12.62□□□□□ -0.39
TRIM28-206ENST00000595974 AADACP22760 399 aa12.62□□□□□ -0.39
TRIM28-206ENST00000595974 ALDH3B2P48448 385 aa12.62□□□□□ -0.39
TRIM28-206ENST00000595974 SSBP2P81877 361 aaPredicted RBP12.62□□□□□ -0.39
TRIM28-206ENST00000595974 RUNX1Q01196 453 aa12.62□□□□□ -0.39
TRIM28-206ENST00000595974 FHL3Q13643 280 aa12.62□□□□□ -0.39
TRIM28-206ENST00000595974 KIAA0141Q14154 515 aaPredicted RBP12.62□□□□□ -0.39
TRIM28-206ENST00000595974 CDK10Q15131 360 aa12.62□□□□□ -0.39
TRIM28-206ENST00000595974 GPR107Q5VW38 600 aa12.62□□□□□ -0.39
TRIM28-206ENST00000595974 FOXB2Q5VYV0 432 aa12.62□□□□□ -0.39
TRIM28-206ENST00000595974 ZNF66Q6ZN08 573 aa12.62□□□□□ -0.39
TRIM28-206ENST00000595974 GPR141Q7Z602 305 aa12.62□□□□□ -0.39
TRIM28-206ENST00000595974 TEX45Q8NA69 505 aa12.62□□□□□ -0.39
TRIM28-206ENST00000595974 LFNGQ8NES3 379 aa12.62□□□□□ -0.39
TRIM28-206ENST00000595974 SECTM1Q8WVN6 248 aa12.62□□□□□ -0.39
TRIM28-206ENST00000595974 AP3S1Q92572 193 aa12.62□□□□□ -0.39
TRIM28-206ENST00000595974 SMIM31A0A1B0GVY4 71 aa12.61□□□□□ -0.39
TRIM28-206ENST00000595974 CREBL2O60519 120 aaPredicted RBP12.61□□□□□ -0.39
TRIM28-206ENST00000595974 FCGR3BO75015 233 aa12.61□□□□□ -0.39
TRIM28-206ENST00000595974 CNIH1O95406 144 aa12.61□□□□□ -0.39
TRIM28-206ENST00000595974 FCER2P06734 321 aa12.61□□□□□ -0.39
TRIM28-206ENST00000595974 CD40LGP29965 261 aa12.61□□□□□ -0.39
TRIM28-206ENST00000595974 PRSS3P35030 304 aa12.61□□□□□ -0.39
TRIM28-206ENST00000595974 GNB1P62873 340 aa12.61□□□□□ -0.39
TRIM28-206ENST00000595974 RPL30P62888 115 aaKnown RBP12.61□□□□□ -0.39
TRIM28-206ENST00000595974 PJVKQ0ZLH3 352 aa12.61□□□□□ -0.39
TRIM28-206ENST00000595974 EIF4EBP1Q13541 118 aaPredicted RBP12.61□□□□□ -0.39
TRIM28-206ENST00000595974 MZT2AQ6P582 158 aa12.61□□□□□ -0.39
TRIM28-206ENST00000595974 ZBTB34Q8NCN2 500 aa12.61□□□□□ -0.39
TRIM28-206ENST00000595974 OR4S2Q8NH73 311 aa12.61□□□□□ -0.39
TRIM28-206ENST00000595974 TCTEX1D2Q8WW35 142 aa12.61□□□□□ -0.39
TRIM28-206ENST00000595974 DPF1Q92782 380 aa12.61□□□□□ -0.39
TRIM28-206ENST00000595974 GNB4Q9HAV0 340 aa12.61□□□□□ -0.39
TRIM28-206ENST00000595974 TGP01266 2768 aa12.6□□□□□ -0.39
TRIM28-206ENST00000595974 I3L521 148 aa12.6□□□□□ -0.39
TRIM28-206ENST00000595974 NAT1P18440 290 aa12.6□□□□□ -0.39
TRIM28-206ENST00000595974 RAB25P57735 213 aa12.6□□□□□ -0.39
TRIM28-206ENST00000595974 TAS2R46P59540 309 aa12.6□□□□□ -0.39
TRIM28-206ENST00000595974 GIMAP1Q8WWP7 306 aa12.6□□□□□ -0.39
TRIM28-206ENST00000595974 TMEM68Q96MH6 324 aa12.6□□□□□ -0.39
TRIM28-206ENST00000595974 SLA2Q9H6Q3 261 aa12.6□□□□□ -0.39
TRIM28-206ENST00000595974 TAS2R8Q9NYW2 309 aa12.6□□□□□ -0.39
TRIM28-206ENST00000595974 EHFQ9NZC4 300 aa12.6□□□□□ -0.39
TRIM28-206ENST00000595974 H3BUA1 57 aa12.59□□□□□ -0.39
TRIM28-206ENST00000595974 HPGDSO60760 199 aa12.59□□□□□ -0.39
TRIM28-206ENST00000595974 PRB2P02812 416 aaPredicted RBP12.59□□□□□ -0.39
TRIM28-206ENST00000595974 SAA1P0DJI8 122 aaPredicted RBP12.59□□□□□ -0.39
TRIM28-206ENST00000595974 ZNF182P17025 639 aaPredicted RBP12.59□□□□□ -0.39
TRIM28-206ENST00000595974 KIR2DS2P43631 304 aa12.59□□□□□ -0.39
TRIM28-206ENST00000595974 FXYD4P59646 89 aa12.59□□□□□ -0.39
TRIM28-206ENST00000595974 HERV-K104P61576 105 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms