RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 CX3CL1P78423 397 aa6.34□□□□□ -1.39
VPS53-214ENST00000572607 UBE2NLQ5JXB2 153 aa6.34□□□□□ -1.39
VPS53-214ENST00000572607 PYHIN1Q6K0P9 492 aa6.34□□□□□ -1.39
VPS53-214ENST00000572607 LCNL1Q6ZST4 164 aa6.34□□□□□ -1.39
VPS53-214ENST00000572607 PPP1R27Q86WC6 154 aa6.34□□□□□ -1.39
VPS53-214ENST00000572607 MRPL41Q8IXM3 137 aaKnown RBP6.34□□□□□ -1.39
VPS53-214ENST00000572607 ZNF645Q8N7E2 425 aa6.34□□□□□ -1.39
VPS53-214ENST00000572607 RNF152Q8N8N0 203 aa6.34□□□□□ -1.39
VPS53-214ENST00000572607 BVESQ8NE79 360 aa6.34□□□□□ -1.39
VPS53-214ENST00000572607 BEST4Q8NFU0 473 aa6.34□□□□□ -1.39
VPS53-214ENST00000572607 OR5H6Q8NGV6 325 aa6.34□□□□□ -1.39
VPS53-214ENST00000572607 C4orf3Q8WVX3 66 aa6.34□□□□□ -1.39
VPS53-214ENST00000572607 ARPC1AQ92747 370 aa6.34□□□□□ -1.39
VPS53-214ENST00000572607 HARBI1Q96MB7 349 aa6.34□□□□□ -1.39
VPS53-214ENST00000572607 ZMAT5Q9UDW3 170 aaKnown RBP6.34□□□□□ -1.39
VPS53-214ENST00000572607 ELF5Q9UKW6 265 aaPredicted RBP6.34□□□□□ -1.39
VPS53-214ENST00000572607 FOXA2Q9Y261 457 aaPredicted RBP6.34□□□□□ -1.39
VPS53-214ENST00000572607 VSIG4Q9Y279 399 aa6.34□□□□□ -1.39
VPS53-214ENST00000572607 MRPS7Q9Y2R9 242 aaKnown RBP6.34□□□□□ -1.39
VPS53-214ENST00000572607 PRELID3BQ9Y3B1 194 aa6.34□□□□□ -1.39
VPS53-214ENST00000572607 OR2W1Q9Y3N9 320 aa6.34□□□□□ -1.39
VPS53-214ENST00000572607 IGKV1D-8A0A087WSZ0 117 aa6.33□□□□□ -1.4
VPS53-214ENST00000572607 G3V318 75 aa6.33□□□□□ -1.4
VPS53-214ENST00000572607 CCL24O00175 119 aa6.33□□□□□ -1.4
VPS53-214ENST00000572607 PSMB8P28062 276 aa6.33□□□□□ -1.4
VPS53-214ENST00000572607 PPIFP30405 207 aaKnown RBP6.33□□□□□ -1.4
VPS53-214ENST00000572607 DUTP33316 252 aaKnown RBP6.33□□□□□ -1.4
VPS53-214ENST00000572607 VMA21Q3ZAQ7 101 aa6.33□□□□□ -1.4
VPS53-214ENST00000572607 ACTBL2Q562R1 376 aa6.33□□□□□ -1.4
VPS53-214ENST00000572607 TMEM69Q5SWH9 247 aa6.33□□□□□ -1.4
VPS53-214ENST00000572607 UNQ5815/PRO19632Q6UWF5 114 aa6.33□□□□□ -1.4
VPS53-214ENST00000572607 ZNF562Q6V9R5 426 aa6.33□□□□□ -1.4
VPS53-214ENST00000572607 ETV3LQ6ZN32 361 aa6.33□□□□□ -1.4
VPS53-214ENST00000572607 C18orf65Q6ZTR6 163 aa6.33□□□□□ -1.4
VPS53-214ENST00000572607 KCTD9Q7L273 389 aa6.33□□□□□ -1.4
VPS53-214ENST00000572607 HOGA1Q86XE5 327 aa6.33□□□□□ -1.4
VPS53-214ENST00000572607 SAMD12Q8N8I0 201 aa6.33□□□□□ -1.4
VPS53-214ENST00000572607 OR5M8Q8NGP6 311 aa6.33□□□□□ -1.4
VPS53-214ENST00000572607 GRPEL2Q8TAA5 225 aa6.33□□□□□ -1.4
VPS53-214ENST00000572607 MRAPQ8TCY5 172 aa6.33□□□□□ -1.4
VPS53-214ENST00000572607 SLC25A38Q96DW6 304 aa6.33□□□□□ -1.4
VPS53-214ENST00000572607 UBE2E2Q96LR5 201 aa6.33□□□□□ -1.4
VPS53-214ENST00000572607 DCUN1D5Q9BTE7 237 aa6.33□□□□□ -1.4
VPS53-214ENST00000572607 AUNIPQ9H7T9 357 aa6.33□□□□□ -1.4
VPS53-214ENST00000572607 IFT46Q9NQC8 304 aa6.33□□□□□ -1.4
VPS53-214ENST00000572607 SMIM31A0A1B0GVY4 71 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 XRCC3O43542 346 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 SSX5O60225 188 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 PROP1O75360 226 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 TUSC2O75896 110 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 ACTL6BO94805 426 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 HLA-DQB1P01920 261 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 PRB2P02812 416 aaPredicted RBP6.32□□□□□ -1.4
VPS53-214ENST00000572607 OR8U8P0C7N1 319 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 TGFBR1P36897 503 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 RPS19P39019 145 aaKnown RBP6.32□□□□□ -1.4
VPS53-214ENST00000572607 RAB9AP51151 201 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 CRIP2P52943 208 aaPredicted RBP6.32□□□□□ -1.4
VPS53-214ENST00000572607 LINC00205P59089 165 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 NDPQ00604 133 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 FXYD3Q14802 87 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 DEFB136Q30KP8 78 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 AKIRIN2Q53H80 203 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 TMEM177Q53S58 311 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 FOXB2Q5VYV0 432 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 ZNF491Q8N8L2 437 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 MINDY2Q8NBR6 621 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 LFNGQ8NES3 379 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 OR11H1Q8NG94 326 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 OR1N2Q8NGR9 330 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 OSR1Q8TAX0 266 aaPredicted RBP6.32□□□□□ -1.4
VPS53-214ENST00000572607 TCTEX1D2Q8WW35 142 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 AP3S1Q92572 193 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 SLC25A46Q96AG3 418 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 RAX2Q96IS3 184 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 DUX3Q96PT4 197 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 P2RX4Q99571 388 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 PHB2Q99623 299 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 HSD17B10Q99714 261 aaKnown RBP6.32□□□□□ -1.4
VPS53-214ENST00000572607 FAM103A1Q9BTL3 118 aaKnown RBP6.32□□□□□ -1.4
VPS53-214ENST00000572607 FUNDC2Q9BWH2 189 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 KRTAP4-9Q9BYQ8 210 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 SLA2Q9H6Q3 261 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 ZNF355PQ9NSJ1 428 aa6.32□□□□□ -1.4
VPS53-214ENST00000572607 AURKAIP1Q9NWT8 199 aaPredicted RBP6.32□□□□□ -1.4
VPS53-214ENST00000572607 RBMX2Q9Y388 322 aaKnown RBP6.32□□□□□ -1.4
VPS53-214ENST00000572607 FCN1O00602 326 aa6.31□□□□□ -1.4
VPS53-214ENST00000572607 MPPED1O15442 326 aa6.31□□□□□ -1.4
VPS53-214ENST00000572607 FCGR3BO75015 233 aa6.31□□□□□ -1.4
VPS53-214ENST00000572607 CRYZL1O95825 349 aa6.31□□□□□ -1.4
VPS53-214ENST00000572607 FCGR2CP31995 323 aa6.31□□□□□ -1.4
VPS53-214ENST00000572607 TPPP2P59282 170 aa6.31□□□□□ -1.4
VPS53-214ENST00000572607 TAS2R20P59543 309 aa6.31□□□□□ -1.4
VPS53-214ENST00000572607 UBE2KP61086 200 aa6.31□□□□□ -1.4
VPS53-214ENST00000572607 VBP1P61758 197 aa6.31□□□□□ -1.4
VPS53-214ENST00000572607 NCS1P62166 190 aa6.31□□□□□ -1.4
VPS53-214ENST00000572607 ZNF616Q08AN1 781 aa6.31□□□□□ -1.4
VPS53-214ENST00000572607 C9orf66Q5T8R8 295 aa6.31□□□□□ -1.4
VPS53-214ENST00000572607 ZNF66Q6ZN08 573 aa6.31□□□□□ -1.4
VPS53-214ENST00000572607 ZBTB34Q8NCN2 500 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms