RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 KCTD12Q96CX2 325 aaKnown RBP14.57□□□□□ -0.08
CLN3-227ENST00000567495 C5orf30Q96GV9 206 aa14.57□□□□□ -0.08
CLN3-227ENST00000567495 DUX3Q96PT4 197 aa14.57□□□□□ -0.08
CLN3-227ENST00000567495 PRELID3BQ9Y3B1 194 aa14.57□□□□□ -0.08
CLN3-227ENST00000567495 A3GALT2U3KPV4 340 aa14.57□□□□□ -0.08
CLN3-227ENST00000567495 PRKDCP78527 4128 aaKnown RBP14.56□□□□□ -0.08
CLN3-227ENST00000567495 I3L521 148 aa14.56□□□□□ -0.08
CLN3-227ENST00000567495 XRCC3O43542 346 aa14.56□□□□□ -0.08
CLN3-227ENST00000567495 TUSC2O75896 110 aa14.56□□□□□ -0.08
CLN3-227ENST00000567495 CRYGBP07316 175 aa14.56□□□□□ -0.08
CLN3-227ENST00000567495 OR8U8P0C7N1 319 aa14.56□□□□□ -0.08
CLN3-227ENST00000567495 NFYAP23511 347 aaPredicted RBP14.56□□□□□ -0.08
CLN3-227ENST00000567495 ARPC4P59998 168 aa14.56□□□□□ -0.08
CLN3-227ENST00000567495 VMA21Q3ZAQ7 101 aa14.56□□□□□ -0.08
CLN3-227ENST00000567495 UBE2NLQ5JXB2 153 aa14.56□□□□□ -0.08
CLN3-227ENST00000567495 TEX45Q8NA69 505 aa14.56□□□□□ -0.08
CLN3-227ENST00000567495 OR11H1Q8NG94 326 aa14.56□□□□□ -0.08
CLN3-227ENST00000567495 OR1N2Q8NGR9 330 aa14.56□□□□□ -0.08
CLN3-227ENST00000567495 HSD17B10Q99714 261 aaKnown RBP14.56□□□□□ -0.08
CLN3-227ENST00000567495 SLA2Q9H6Q3 261 aa14.56□□□□□ -0.08
CLN3-227ENST00000567495 MRPS7Q9Y2R9 242 aaKnown RBP14.56□□□□□ -0.08
CLN3-227ENST00000567495 RBMX2Q9Y388 322 aaKnown RBP14.56□□□□□ -0.08
CLN3-227ENST00000567495 SOX15O60248 233 aa14.55□□□□□ -0.08
CLN3-227ENST00000567495 UBE2KP61086 200 aa14.55□□□□□ -0.08
CLN3-227ENST00000567495 MSMO1Q15800 293 aa14.55□□□□□ -0.08
CLN3-227ENST00000567495 LFNGQ8NES3 379 aa14.55□□□□□ -0.08
CLN3-227ENST00000567495 GRPEL2Q8TAA5 225 aa14.55□□□□□ -0.08
CLN3-227ENST00000567495 SLC25A46Q96AG3 418 aa14.55□□□□□ -0.08
CLN3-227ENST00000567495 GNB4Q9HAV0 340 aa14.55□□□□□ -0.08
CLN3-227ENST00000567495 LINC00473A8K010 186 aa14.54□□□□□ -0.08
CLN3-227ENST00000567495 H3BUA1 57 aa14.54□□□□□ -0.08
CLN3-227ENST00000567495 CREBL2O60519 120 aaPredicted RBP14.54□□□□□ -0.08
CLN3-227ENST00000567495 CRYZL1O95825 349 aa14.54□□□□□ -0.08
CLN3-227ENST00000567495 LSM3P62310 102 aaKnown RBP14.54□□□□□ -0.08
CLN3-227ENST00000567495 ZNF616Q08AN1 781 aa14.54□□□□□ -0.08
CLN3-227ENST00000567495 KCTD9Q7L273 389 aa14.54□□□□□ -0.08
CLN3-227ENST00000567495 OVCH2Q7RTZ1 564 aa14.54□□□□□ -0.08
CLN3-227ENST00000567495 FAM103A1Q9BTL3 118 aaKnown RBP14.54□□□□□ -0.08
CLN3-227ENST00000567495 TPSG1Q9NRR2 321 aa14.54□□□□□ -0.08
CLN3-227ENST00000567495 SRRM4A7MD48 611 aaKnown RBP14.53□□□□□ -0.08
CLN3-227ENST00000567495 J3QRK9 145 aa14.53□□□□□ -0.08
CLN3-227ENST00000567495 ARPC1BO15143 372 aaKnown RBP14.53□□□□□ -0.08
CLN3-227ENST00000567495 HOXD3P31249 432 aaPredicted RBP14.53□□□□□ -0.08
CLN3-227ENST00000567495 GNB1P62873 340 aa14.53□□□□□ -0.08
CLN3-227ENST00000567495 DCTN2Q13561 401 aaKnown RBP14.53□□□□□ -0.08
CLN3-227ENST00000567495 C9orf66Q5T8R8 295 aa14.53□□□□□ -0.08
CLN3-227ENST00000567495 SAMD12Q8N8I0 201 aa14.53□□□□□ -0.08
CLN3-227ENST00000567495 FUNDC2Q9BWH2 189 aa14.53□□□□□ -0.08
CLN3-227ENST00000567495 IGKV1D-13A0A0B4J2D9 117 aa14.52□□□□□ -0.09
CLN3-227ENST00000567495 RAMP3O60896 148 aa14.52□□□□□ -0.09
CLN3-227ENST00000567495 LGALS1P09382 135 aaKnown RBP14.52□□□□□ -0.09
CLN3-227ENST00000567495 IGKV1-13P0DP09 117 aa14.52□□□□□ -0.09
CLN3-227ENST00000567495 FCGR2CP31995 323 aa14.52□□□□□ -0.09
CLN3-227ENST00000567495 TGFBR1P36897 503 aa14.52□□□□□ -0.09
CLN3-227ENST00000567495 KRTAP10-11P60412 298 aa14.52□□□□□ -0.09
CLN3-227ENST00000567495 PRSS8Q16651 343 aa14.52□□□□□ -0.09
CLN3-227ENST00000567495 TMEM69Q5SWH9 247 aa14.52□□□□□ -0.09
CLN3-227ENST00000567495 ZNF66Q6ZN08 573 aa14.52□□□□□ -0.09
CLN3-227ENST00000567495 GVQW1Q8N7I0 195 aa14.52□□□□□ -0.09
CLN3-227ENST00000567495 ZBTB34Q8NCN2 500 aa14.52□□□□□ -0.09
CLN3-227ENST00000567495 OR13F1Q8NGS4 319 aa14.52□□□□□ -0.09
CLN3-227ENST00000567495 CMTM3Q96MX0 182 aa14.52□□□□□ -0.09
CLN3-227ENST00000567495 DCUN1D5Q9BTE7 237 aa14.52□□□□□ -0.09
CLN3-227ENST00000567495 SEC14L6B5MCN3 397 aa14.51□□□□□ -0.09
CLN3-227ENST00000567495 FCGR3BO75015 233 aa14.51□□□□□ -0.09
CLN3-227ENST00000567495 BRI3O95415 125 aa14.51□□□□□ -0.09
CLN3-227ENST00000567495 IGLV2-14P01704 120 aa14.51□□□□□ -0.09
CLN3-227ENST00000567495 INSL3P51460 131 aa14.51□□□□□ -0.09
CLN3-227ENST00000567495 TPPP2P59282 170 aa14.51□□□□□ -0.09
CLN3-227ENST00000567495 DGCR2P98153 550 aa14.51□□□□□ -0.09
CLN3-227ENST00000567495 PJVKQ0ZLH3 352 aa14.51□□□□□ -0.09
CLN3-227ENST00000567495 POC5Q8NA72 575 aa14.51□□□□□ -0.09
CLN3-227ENST00000567495 OR5AP2Q8NGF4 316 aa14.51□□□□□ -0.09
CLN3-227ENST00000567495 OR4S2Q8NH73 311 aa14.51□□□□□ -0.09
CLN3-227ENST00000567495 ACOT12Q8WYK0 555 aa14.51□□□□□ -0.09
CLN3-227ENST00000567495 OR5B12Q96R08 314 aa14.51□□□□□ -0.09
CLN3-227ENST00000567495 IFT46Q9NQC8 304 aa14.51□□□□□ -0.09
CLN3-227ENST00000567495 A0A0G2JLM5 398 aa14.5□□□□□ -0.09
CLN3-227ENST00000567495 SMIM31A0A1B0GVY4 71 aa14.5□□□□□ -0.09
CLN3-227ENST00000567495 ACTL6BO94805 426 aa14.5□□□□□ -0.09
CLN3-227ENST00000567495 PPYP01298 95 aa14.5□□□□□ -0.09
CLN3-227ENST00000567495 AADACP22760 399 aa14.5□□□□□ -0.09
CLN3-227ENST00000567495 KIR2DS2P43631 304 aa14.5□□□□□ -0.09
CLN3-227ENST00000567495 SSBP2P81877 361 aaPredicted RBP14.5□□□□□ -0.09
CLN3-227ENST00000567495 VSTM2AQ8TAG5 236 aa14.5□□□□□ -0.09
CLN3-227ENST00000567495 GIMAP1Q8WWP7 306 aa14.5□□□□□ -0.09
CLN3-227ENST00000567495 BORCS5Q969J3 196 aa14.5□□□□□ -0.09
CLN3-227ENST00000567495 AIFM2Q9BRQ8 373 aa14.5□□□□□ -0.09
CLN3-227ENST00000567495 ZNF355PQ9NSJ1 428 aa14.5□□□□□ -0.09
CLN3-227ENST00000567495 LINC01619G3V211 115 aa14.49□□□□□ -0.09
CLN3-227ENST00000567495 K7EIL1 84 aa14.49□□□□□ -0.09
CLN3-227ENST00000567495 APOA1P02647 267 aa14.49□□□□□ -0.09
CLN3-227ENST00000567495 TRGV3P03979 118 aa14.49□□□□□ -0.09
CLN3-227ENST00000567495 TAS2R46P59540 309 aa14.49□□□□□ -0.09
CLN3-227ENST00000567495 TAS2R20P59543 309 aa14.49□□□□□ -0.09
CLN3-227ENST00000567495 NCS1P62166 190 aa14.49□□□□□ -0.09
CLN3-227ENST00000567495 EIF4EBP1Q13541 118 aaPredicted RBP14.49□□□□□ -0.09
CLN3-227ENST00000567495 CDK10Q15131 360 aa14.49□□□□□ -0.09
CLN3-227ENST00000567495 MMD2Q8IY49 270 aa14.49□□□□□ -0.09
CLN3-227ENST00000567495 MFSD4AQ8N468 514 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms