RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 RRHO14718 337 aa15.43■□□□□ 0.06
CLN3-225ENST00000566824 FCGR3BO75015 233 aa15.43■□□□□ 0.06
CLN3-225ENST00000566824 RAB3DO95716 219 aa15.43■□□□□ 0.06
CLN3-225ENST00000566824 TAS2R19P59542 299 aa15.43■□□□□ 0.06
CLN3-225ENST00000566824 SSBP1Q04837 148 aaKnown RBP15.43■□□□□ 0.06
CLN3-225ENST00000566824 TMEM177Q53S58 311 aa15.43■□□□□ 0.06
CLN3-225ENST00000566824 MRGPRFQ96AM1 343 aa15.43■□□□□ 0.06
CLN3-225ENST00000566824 CITED1Q99966 193 aa15.43■□□□□ 0.06
CLN3-225ENST00000566824 THAP7Q9BT49 309 aaPredicted RBP15.43■□□□□ 0.06
CLN3-225ENST00000566824 TNCP24821 2201 aa15.43■□□□□ 0.06
CLN3-225ENST00000566824 ANKRD20A5PA0PJZ0 165 aa15.43■□□□□ 0.06
CLN3-225ENST00000566824 SLC25A17O43808 307 aa15.43■□□□□ 0.06
CLN3-225ENST00000566824 CRYZL1O95825 349 aa15.43■□□□□ 0.06
CLN3-225ENST00000566824 ETV6P41212 452 aa15.43■□□□□ 0.06
CLN3-225ENST00000566824 MSMO1Q15800 293 aa15.43■□□□□ 0.06
CLN3-225ENST00000566824 SLC35E3Q7Z769 313 aa15.43■□□□□ 0.06
CLN3-225ENST00000566824 LHFPL1Q86WI0 220 aa15.43■□□□□ 0.06
CLN3-225ENST00000566824 OR4C16Q8NGL9 310 aa15.43■□□□□ 0.06
CLN3-225ENST00000566824 TRIM63Q969Q1 353 aa15.43■□□□□ 0.06
CLN3-225ENST00000566824 CLCC1Q96S66 551 aa15.43■□□□□ 0.06
CLN3-225ENST00000566824 HSD17B10Q99714 261 aaKnown RBP15.43■□□□□ 0.06
CLN3-225ENST00000566824 VWFP04275 2813 aa15.42■□□□□ 0.06
CLN3-225ENST00000566824 IGHV7-81A0A0B4J1V7 117 aa15.42■□□□□ 0.06
CLN3-225ENST00000566824 RAMP3O60896 148 aa15.42■□□□□ 0.06
CLN3-225ENST00000566824 CRYGBP07316 175 aa15.42■□□□□ 0.06
CLN3-225ENST00000566824 CSF1P09603 554 aa15.42■□□□□ 0.06
CLN3-225ENST00000566824 CD28P10747 220 aa15.42■□□□□ 0.06
CLN3-225ENST00000566824 TBPP20226 339 aa15.42■□□□□ 0.06
CLN3-225ENST00000566824 NDPQ00604 133 aa15.42■□□□□ 0.06
CLN3-225ENST00000566824 PJVKQ0ZLH3 352 aa15.42■□□□□ 0.06
CLN3-225ENST00000566824 RTL8BQ17RB0 113 aa15.42■□□□□ 0.06
CLN3-225ENST00000566824 MRGPRG-AS1Q2M3A8 158 aa15.42■□□□□ 0.06
CLN3-225ENST00000566824 ZNF66Q6ZN08 573 aa15.42■□□□□ 0.06
CLN3-225ENST00000566824 HARBI1Q96MB7 349 aa15.42■□□□□ 0.06
CLN3-225ENST00000566824 RNF5Q99942 180 aa15.42■□□□□ 0.06
CLN3-225ENST00000566824 RSRP1Q9BUV0 290 aa15.42■□□□□ 0.06
CLN3-225ENST00000566824 SRRQ9GZT4 340 aa15.42■□□□□ 0.06
CLN3-225ENST00000566824 KIAA1456Q9P272 454 aa15.42■□□□□ 0.06
CLN3-225ENST00000566824 METTL1Q9UBP6 276 aaKnown RBP15.42■□□□□ 0.06
CLN3-225ENST00000566824 PGLYRP1O75594 196 aaPredicted RBP15.41■□□□□ 0.06
CLN3-225ENST00000566824 HLA-DRB1P01911 266 aa15.41■□□□□ 0.06
CLN3-225ENST00000566824 IFNA6P05013 189 aa15.41■□□□□ 0.06
CLN3-225ENST00000566824 TAGLNQ01995 201 aaKnown RBP15.41■□□□□ 0.06
CLN3-225ENST00000566824 PHLDA2Q53GA4 152 aa15.41■□□□□ 0.06
CLN3-225ENST00000566824 TCTEX1D4Q5JR98 221 aa15.41■□□□□ 0.06
CLN3-225ENST00000566824 LIN54Q6MZP7 749 aa15.41■□□□□ 0.06
CLN3-225ENST00000566824 SHISA2Q6UWI4 295 aa15.41■□□□□ 0.06
CLN3-225ENST00000566824 Q8N402 240 aa15.41■□□□□ 0.06
CLN3-225ENST00000566824 ZBTB34Q8NCN2 500 aa15.41■□□□□ 0.06
CLN3-225ENST00000566824 OR51H1Q8NH63 302 aa15.41■□□□□ 0.06
CLN3-225ENST00000566824 TSNAXQ99598 290 aaKnown RBP15.41■□□□□ 0.06
CLN3-225ENST00000566824 SDHCQ99643 169 aaPredicted RBP15.41■□□□□ 0.06
CLN3-225ENST00000566824 FBXO7Q9Y3I1 522 aa15.41■□□□□ 0.06
CLN3-225ENST00000566824 SHOXO15266 292 aa15.4■□□□□ 0.06
CLN3-225ENST00000566824 RLN1P04808 185 aa15.4■□□□□ 0.06
CLN3-225ENST00000566824 RRASP10301 218 aa15.4■□□□□ 0.06
CLN3-225ENST00000566824 PI3P19957 117 aa15.4■□□□□ 0.06
CLN3-225ENST00000566824 PTBP1P26599 531 aaKnown RBP eCLIP15.4■□□□□ 0.06
CLN3-225ENST00000566824 PPP5CP53041 499 aa15.4■□□□□ 0.06
CLN3-225ENST00000566824 SSBP2P81877 361 aaPredicted RBP15.4■□□□□ 0.06
CLN3-225ENST00000566824 SPANXN2Q5MJ10 180 aa15.4■□□□□ 0.06
CLN3-225ENST00000566824 ZNF329Q86UD4 541 aa15.4■□□□□ 0.06
CLN3-225ENST00000566824 VKORC1L1Q8N0U8 176 aa15.4■□□□□ 0.06
CLN3-225ENST00000566824 ARRDC1Q8N5I2 433 aa15.4■□□□□ 0.06
CLN3-225ENST00000566824 PRELID3BQ9Y3B1 194 aa15.4■□□□□ 0.06
CLN3-225ENST00000566824 PKD1L1Q8TDX9 2849 aa15.4■□□□□ 0.06
CLN3-225ENST00000566824 TET2Q6N021 2002 aaPredicted RBP15.39■□□□□ 0.05
CLN3-225ENST00000566824 GPR31O00270 319 aa15.39■□□□□ 0.05
CLN3-225ENST00000566824 AKAIN1P0CW23 69 aa15.39■□□□□ 0.05
CLN3-225ENST00000566824 LGALS7P47929 136 aa15.39■□□□□ 0.05
CLN3-225ENST00000566824 UCP3P55916 312 aa15.39■□□□□ 0.05
CLN3-225ENST00000566824 CX3CL1P78423 397 aa15.39■□□□□ 0.05
CLN3-225ENST00000566824 KLF9Q13886 244 aaPredicted RBP15.39■□□□□ 0.05
CLN3-225ENST00000566824 PLGLAQ15195 96 aa15.39■□□□□ 0.05
CLN3-225ENST00000566824 SCGB2B2Q4G0G5 96 aa15.39■□□□□ 0.05
CLN3-225ENST00000566824 IDO2Q6ZQW0 420 aa15.39■□□□□ 0.05
CLN3-225ENST00000566824 CENPVQ7Z7K6 275 aaPredicted RBP15.39■□□□□ 0.05
CLN3-225ENST00000566824 SPAG16Q8N0X2 631 aa15.39■□□□□ 0.05
CLN3-225ENST00000566824 OR5AU1Q8NGC0 362 aa15.39■□□□□ 0.05
CLN3-225ENST00000566824 ARPC1BO15143 372 aaKnown RBP15.38■□□□□ 0.05
CLN3-225ENST00000566824 ATP6V0E1O15342 81 aa15.38■□□□□ 0.05
CLN3-225ENST00000566824 SPDEFO95238 335 aa15.38■□□□□ 0.05
CLN3-225ENST00000566824 CA2P00918 260 aa15.38■□□□□ 0.05
CLN3-225ENST00000566824 EGR2P11161 476 aaPredicted RBP15.38■□□□□ 0.05
CLN3-225ENST00000566824 BAK1Q16611 211 aa15.38■□□□□ 0.05
CLN3-225ENST00000566824 STPG2Q8N412 459 aa15.38■□□□□ 0.05
CLN3-225ENST00000566824 TERB2Q8NHR7 220 aa15.38■□□□□ 0.05
CLN3-225ENST00000566824 MARCH1Q8TCQ1 289 aa15.38■□□□□ 0.05
CLN3-225ENST00000566824 OR51J1Q9H342 316 aa15.38■□□□□ 0.05
CLN3-225ENST00000566824 PARP11Q9NR21 331 aa15.38■□□□□ 0.05
CLN3-225ENST00000566824 TRRAPQ9Y4A5 3859 aa15.37■□□□□ 0.05
CLN3-225ENST00000566824 WNK1Q9H4A3 2382 aa15.37■□□□□ 0.05
CLN3-225ENST00000566824 SAA1P0DJI8 122 aaPredicted RBP15.37■□□□□ 0.05
CLN3-225ENST00000566824 PGAM2P15259 253 aa15.37■□□□□ 0.05
CLN3-225ENST00000566824 CBX3Q13185 183 aa15.37■□□□□ 0.05
CLN3-225ENST00000566824 MEF2DQ14814 521 aa15.37■□□□□ 0.05
CLN3-225ENST00000566824 OR51S1Q8NGJ8 323 aa15.37■□□□□ 0.05
CLN3-225ENST00000566824 OR13C8Q8NGS7 320 aa15.37■□□□□ 0.05
CLN3-225ENST00000566824 OR4S2Q8NH73 311 aa15.37■□□□□ 0.05
CLN3-225ENST00000566824 OSR1Q8TAX0 266 aaPredicted RBP15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms