RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 SHOXO15266 292 aa12.38□□□□□ -0.43
CDH3-205ENST00000566808 OR2J3O76001 311 aa12.38□□□□□ -0.43
CDH3-205ENST00000566808 FCGR2BP31994 310 aaPredicted RBP12.38□□□□□ -0.43
CDH3-205ENST00000566808 ARL3P36405 182 aa12.38□□□□□ -0.43
CDH3-205ENST00000566808 HLA-DRB3P79483 266 aa12.38□□□□□ -0.43
CDH3-205ENST00000566808 PRSS8Q16651 343 aa12.38□□□□□ -0.43
CDH3-205ENST00000566808 TMEM177Q53S58 311 aa12.38□□□□□ -0.43
CDH3-205ENST00000566808 OR13C5Q8NGS8 318 aa12.38□□□□□ -0.43
CDH3-205ENST00000566808 SETD6Q8TBK2 473 aa12.38□□□□□ -0.43
CDH3-205ENST00000566808 SPIN2AQ99865 258 aa12.38□□□□□ -0.43
CDH3-205ENST00000566808 SPIN2BQ9BPZ2 258 aa12.38□□□□□ -0.43
CDH3-205ENST00000566808 MAP6D1Q9H9H5 199 aa12.38□□□□□ -0.43
CDH3-205ENST00000566808 UBQLN2Q9UHD9 624 aa12.38□□□□□ -0.43
CDH3-205ENST00000566808 OAZ3Q9UMX2 235 aa12.38□□□□□ -0.43
CDH3-205ENST00000566808 RTL8CO15255 209 aa12.37□□□□□ -0.43
CDH3-205ENST00000566808 RPL35AP18077 110 aaKnown RBP12.37□□□□□ -0.43
CDH3-205ENST00000566808 GYS2P54840 703 aa12.37□□□□□ -0.43
CDH3-205ENST00000566808 RTL8BQ17RB0 113 aa12.37□□□□□ -0.43
CDH3-205ENST00000566808 ODF3L2Q3SX64 289 aa12.37□□□□□ -0.43
CDH3-205ENST00000566808 VMA21Q3ZAQ7 101 aa12.37□□□□□ -0.43
CDH3-205ENST00000566808 Q499Y3 187 aa12.37□□□□□ -0.43
CDH3-205ENST00000566808 C6orf201Q7Z4U5 140 aa12.37□□□□□ -0.43
CDH3-205ENST00000566808 AMIGO2Q86SJ2 522 aa12.37□□□□□ -0.43
CDH3-205ENST00000566808 SLC25A42Q86VD7 318 aa12.37□□□□□ -0.43
CDH3-205ENST00000566808 TEX45Q8NA69 505 aa12.37□□□□□ -0.43
CDH3-205ENST00000566808 ACOT12Q8WYK0 555 aa12.37□□□□□ -0.43
CDH3-205ENST00000566808 GALNT14Q96FL9 552 aa12.37□□□□□ -0.43
CDH3-205ENST00000566808 CCDC140Q96MF4 163 aa12.37□□□□□ -0.43
CDH3-205ENST00000566808 RARRES2Q99969 163 aa12.37□□□□□ -0.43
CDH3-205ENST00000566808 FAAP24Q9BTP7 215 aa12.37□□□□□ -0.43
CDH3-205ENST00000566808 DMBT1Q9UGM3 2413 aaPredicted RBP12.37□□□□□ -0.43
CDH3-205ENST00000566808 C11orf94C9JXX5 98 aa12.36□□□□□ -0.43
CDH3-205ENST00000566808 CREBL2O60519 120 aaPredicted RBP12.36□□□□□ -0.43
CDH3-205ENST00000566808 LIMS3P0CW19 117 aa12.36□□□□□ -0.43
CDH3-205ENST00000566808 LIMS4P0CW20 117 aa12.36□□□□□ -0.43
CDH3-205ENST00000566808 FCGR1AP12314 374 aa12.36□□□□□ -0.43
CDH3-205ENST00000566808 MFAP2P55001 183 aa12.36□□□□□ -0.43
CDH3-205ENST00000566808 UBE2KP61086 200 aa12.36□□□□□ -0.43
CDH3-205ENST00000566808 TAGLNQ01995 201 aaKnown RBP12.36□□□□□ -0.43
CDH3-205ENST00000566808 DNAL1Q4LDG9 190 aa12.36□□□□□ -0.43
CDH3-205ENST00000566808 TTC9CQ8N5M4 171 aa12.36□□□□□ -0.43
CDH3-205ENST00000566808 GHRLQ9UBU3 117 aa12.36□□□□□ -0.43
CDH3-205ENST00000566808 MGAT4AQ9UM21 535 aa12.36□□□□□ -0.43
CDH3-205ENST00000566808 ZNF257Q9Y2Q1 563 aa12.36□□□□□ -0.43
CDH3-205ENST00000566808 TRBV6-6A0A0A6YYG2 114 aa12.35□□□□□ -0.43
CDH3-205ENST00000566808 SRRM4A7MD48 611 aaKnown RBP12.35□□□□□ -0.43
CDH3-205ENST00000566808 DYNC1I1O14576 645 aa12.35□□□□□ -0.43
CDH3-205ENST00000566808 C8orf88P0DMB2 117 aa12.35□□□□□ -0.43
CDH3-205ENST00000566808 IDO2Q6ZQW0 420 aa12.35□□□□□ -0.43
CDH3-205ENST00000566808 NKAIN3Q8N8D7 197 aa12.35□□□□□ -0.43
CDH3-205ENST00000566808 OR52I1Q8NGK6 324 aa12.35□□□□□ -0.43
CDH3-205ENST00000566808 UQCC2Q9BRT2 126 aa12.35□□□□□ -0.43
CDH3-205ENST00000566808 RIMS4Q9H426 269 aaPredicted RBP12.35□□□□□ -0.43
CDH3-205ENST00000566808 C5orf66Q9H5L9 145 aa12.35□□□□□ -0.43
CDH3-205ENST00000566808 AASSQ9UDR5 926 aa12.35□□□□□ -0.43
CDH3-205ENST00000566808 TSPAN4O14817 238 aa12.34□□□□□ -0.43
CDH3-205ENST00000566808 ACTL6BO94805 426 aa12.34□□□□□ -0.43
CDH3-205ENST00000566808 SCTP09683 121 aa12.34□□□□□ -0.43
CDH3-205ENST00000566808 GABRB1P18505 474 aa12.34□□□□□ -0.43
CDH3-205ENST00000566808 YIF1BQ5BJH7 314 aa12.34□□□□□ -0.43
CDH3-205ENST00000566808 CLEC19AQ6UXS0 136 aa12.34□□□□□ -0.43
CDH3-205ENST00000566808 ZNF575Q86XF7 245 aa12.34□□□□□ -0.43
CDH3-205ENST00000566808 C6orf62Q9GZU0 229 aaPredicted RBP12.34□□□□□ -0.43
CDH3-205ENST00000566808 MRPL27Q9P0M9 148 aaKnown RBP12.34□□□□□ -0.43
CDH3-205ENST00000566808 ORC6Q9Y5N6 252 aa12.34□□□□□ -0.43
CDH3-205ENST00000566808 TRBV5-7A0A0A0MS05 114 aa12.33□□□□□ -0.44
CDH3-205ENST00000566808 GYG2O15488 501 aa12.33□□□□□ -0.44
CDH3-205ENST00000566808 OGG1O15527 345 aa12.33□□□□□ -0.44
CDH3-205ENST00000566808 S1PR2O95136 353 aa12.33□□□□□ -0.44
CDH3-205ENST00000566808 IGHV3-23P01764 117 aa12.33□□□□□ -0.44
CDH3-205ENST00000566808 UBBP0CG47 229 aa12.33□□□□□ -0.44
CDH3-205ENST00000566808 RRASP10301 218 aa12.33□□□□□ -0.44
CDH3-205ENST00000566808 GALP22466 123 aa12.33□□□□□ -0.44
CDH3-205ENST00000566808 GNGT1P63211 74 aa12.33□□□□□ -0.44
CDH3-205ENST00000566808 Q96MT0 163 aa12.33□□□□□ -0.44
CDH3-205ENST00000566808 ZNF430Q9H8G1 570 aaPredicted RBP12.33□□□□□ -0.44
CDH3-205ENST00000566808 AMBNQ9NP70 447 aa12.33□□□□□ -0.44
CDH3-205ENST00000566808 RDH8Q9NYR8 311 aa12.33□□□□□ -0.44
CDH3-205ENST00000566808 AP4S1Q9Y587 144 aa12.33□□□□□ -0.44
CDH3-205ENST00000566808 MPTX1A8MV57 137 aa12.32□□□□□ -0.44
CDH3-205ENST00000566808 GSTT2P0CG29 244 aa12.32□□□□□ -0.44
CDH3-205ENST00000566808 GSTT2BP0CG30 244 aa12.32□□□□□ -0.44
CDH3-205ENST00000566808 MYOD1P15172 320 aa12.32□□□□□ -0.44
CDH3-205ENST00000566808 ELLP55199 621 aaPredicted RBP12.32□□□□□ -0.44
CDH3-205ENST00000566808 RPS11P62280 158 aaKnown RBP eCLIP12.32□□□□□ -0.44
CDH3-205ENST00000566808 RPS27AP62979 156 aaKnown RBP12.32□□□□□ -0.44
CDH3-205ENST00000566808 ZNF585BQ52M93 769 aa12.32□□□□□ -0.44
CDH3-205ENST00000566808 C10orf55Q5SWW7 151 aa12.32□□□□□ -0.44
CDH3-205ENST00000566808 UNQ9165/PRO28630Q6UXU0 137 aa12.32□□□□□ -0.44
CDH3-205ENST00000566808 TMPRSS11AQ6ZMR5 421 aa12.32□□□□□ -0.44
CDH3-205ENST00000566808 OR11H2Q8NH07 326 aa12.32□□□□□ -0.44
CDH3-205ENST00000566808 EEF1AKMT3Q96AZ1 226 aa12.32□□□□□ -0.44
CDH3-205ENST00000566808 CENPNQ96H22 339 aaPredicted RBP12.32□□□□□ -0.44
CDH3-205ENST00000566808 SLC29A1Q99808 456 aa12.32□□□□□ -0.44
CDH3-205ENST00000566808 TMEM59Q9BXS4 323 aa12.32□□□□□ -0.44
CDH3-205ENST00000566808 OR2D2Q9H210 308 aa12.32□□□□□ -0.44
CDH3-205ENST00000566808 HRH4Q9H3N8 390 aa12.32□□□□□ -0.44
CDH3-205ENST00000566808 MRPS18AQ9NVS2 196 aaKnown RBP12.32□□□□□ -0.44
CDH3-205ENST00000566808 SDHAF2Q9NX18 166 aa12.32□□□□□ -0.44
CDH3-205ENST00000566808 UFC1Q9Y3C8 167 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms