RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 OR5T1Q8NG75 326 aa16.06■□□□□ 0.16
CLN3-219ENST00000565778 NUDCD2Q8WVJ2 157 aa16.06■□□□□ 0.16
CLN3-219ENST00000565778 C5orf30Q96GV9 206 aa16.06■□□□□ 0.16
CLN3-219ENST00000565778 ADTRPQ96IZ2 230 aa16.06■□□□□ 0.16
CLN3-219ENST00000565778 LINC01619G3V211 115 aa16.05■□□□□ 0.16
CLN3-219ENST00000565778 OVOL1O14753 267 aa16.05■□□□□ 0.16
CLN3-219ENST00000565778 TRGV3P03979 118 aa16.05■□□□□ 0.16
CLN3-219ENST00000565778 LGALS1P09382 135 aaKnown RBP16.05■□□□□ 0.16
CLN3-219ENST00000565778 NFYAP23511 347 aaPredicted RBP16.05■□□□□ 0.16
CLN3-219ENST00000565778 TMEM177Q53S58 311 aa16.05■□□□□ 0.16
CLN3-219ENST00000565778 SLA2Q9H6Q3 261 aa16.05■□□□□ 0.16
CLN3-219ENST00000565778 RHBDL2Q9NX52 303 aa16.05■□□□□ 0.16
CLN3-219ENST00000565778 SRRM4A7MD48 611 aaKnown RBP16.04■□□□□ 0.16
CLN3-219ENST00000565778 CRYGBP07316 175 aa16.04■□□□□ 0.16
CLN3-219ENST00000565778 DUTP33316 252 aaKnown RBP16.04■□□□□ 0.16
CLN3-219ENST00000565778 INSL3P51460 131 aa16.04■□□□□ 0.16
CLN3-219ENST00000565778 SLURP1P55000 103 aa16.04■□□□□ 0.16
CLN3-219ENST00000565778 KCTD21Q4G0X4 260 aa16.04■□□□□ 0.16
CLN3-219ENST00000565778 CNIH2Q6PI25 160 aa16.04■□□□□ 0.16
CLN3-219ENST00000565778 DLX4Q92988 240 aaPredicted RBP16.04■□□□□ 0.16
CLN3-219ENST00000565778 RHOVQ96L33 236 aa16.04■□□□□ 0.16
CLN3-219ENST00000565778 PRR25Q96S07 402 aa16.04■□□□□ 0.16
CLN3-219ENST00000565778 OR2W1Q9Y3N9 320 aa16.04■□□□□ 0.16
CLN3-219ENST00000565778 TRAV18A0A075B6X5 111 aa16.03■□□□□ 0.16
CLN3-219ENST00000565778 IGHV4OR15-8A0A075B7B6 117 aa16.03■□□□□ 0.16
CLN3-219ENST00000565778 A0A087WW49 117 aa16.03■□□□□ 0.16
CLN3-219ENST00000565778 LINC00473A8K010 186 aa16.03■□□□□ 0.16
CLN3-219ENST00000565778 CRYZL1O95825 349 aa16.03■□□□□ 0.16
CLN3-219ENST00000565778 HSPB1P04792 205 aaKnown RBP16.03■□□□□ 0.16
CLN3-219ENST00000565778 VMA21Q3ZAQ7 101 aa16.03■□□□□ 0.16
CLN3-219ENST00000565778 OR5H6Q8NGV6 325 aa16.03■□□□□ 0.16
CLN3-219ENST00000565778 B9D2Q9BPU9 175 aa16.03■□□□□ 0.16
CLN3-219ENST00000565778 DCUN1D5Q9BTE7 237 aa16.03■□□□□ 0.16
CLN3-219ENST00000565778 SSX5O60225 188 aa16.02■□□□□ 0.16
CLN3-219ENST00000565778 TUSC2O75896 110 aa16.02■□□□□ 0.16
CLN3-219ENST00000565778 SCAND1P57086 179 aa16.02■□□□□ 0.16
CLN3-219ENST00000565778 VAX1Q5SQQ9 334 aa16.02■□□□□ 0.16
CLN3-219ENST00000565778 ZNF429Q86V71 674 aa16.02■□□□□ 0.16
CLN3-219ENST00000565778 ZNF645Q8N7E2 425 aa16.02■□□□□ 0.16
CLN3-219ENST00000565778 TEX45Q8NA69 505 aa16.02■□□□□ 0.16
CLN3-219ENST00000565778 DDB2Q92466 427 aa16.02■□□□□ 0.16
CLN3-219ENST00000565778 TMEM68Q96MH6 324 aa16.02■□□□□ 0.16
CLN3-219ENST00000565778 ANXA10Q9UJ72 324 aa16.02■□□□□ 0.16
CLN3-219ENST00000565778 ETV7Q9Y603 341 aa16.02■□□□□ 0.16
CLN3-219ENST00000565778 C13orf42A0A1B0GVH6 325 aa16.01■□□□□ 0.15
CLN3-219ENST00000565778 SAP30O75446 220 aa16.01■□□□□ 0.15
CLN3-219ENST00000565778 SLC22A5O76082 557 aa16.01■□□□□ 0.15
CLN3-219ENST00000565778 LY86O95711 162 aa16.01■□□□□ 0.15
CLN3-219ENST00000565778 HLA-DQB1P01920 261 aa16.01■□□□□ 0.15
CLN3-219ENST00000565778 SSBP2P81877 361 aaPredicted RBP16.01■□□□□ 0.15
CLN3-219ENST00000565778 POC5Q8NA72 575 aa16.01■□□□□ 0.15
CLN3-219ENST00000565778 PHB2Q99623 299 aa16.01■□□□□ 0.15
CLN3-219ENST00000565778 DIABLOQ9NR28 239 aa16.01■□□□□ 0.15
CLN3-219ENST00000565778 ZNF256Q9Y2P7 627 aaPredicted RBP16.01■□□□□ 0.15
CLN3-219ENST00000565778 PRELID3BQ9Y3B1 194 aa16.01■□□□□ 0.15
CLN3-219ENST00000565778 A0A0G2JLM5 398 aa16■□□□□ 0.15
CLN3-219ENST00000565778 MSGN1A6NI15 193 aa16■□□□□ 0.15
CLN3-219ENST00000565778 UBE2KP61086 200 aa16■□□□□ 0.15
CLN3-219ENST00000565778 IDO2Q6ZQW0 420 aa16■□□□□ 0.15
CLN3-219ENST00000565778 OSR1Q8TAX0 266 aaPredicted RBP16■□□□□ 0.15
CLN3-219ENST00000565778 RBMX2Q9Y388 322 aaKnown RBP16■□□□□ 0.15
CLN3-219ENST00000565778 H3BUA1 57 aa15.99■□□□□ 0.15
CLN3-219ENST00000565778 FCGR3BO75015 233 aa15.99■□□□□ 0.15
CLN3-219ENST00000565778 ARPC4P59998 168 aa15.99■□□□□ 0.15
CLN3-219ENST00000565778 TNXAQ16473 311 aa15.99■□□□□ 0.15
CLN3-219ENST00000565778 TIMM50Q3ZCQ8 353 aa15.99■□□□□ 0.15
CLN3-219ENST00000565778 C11orf87Q6NUJ2 197 aa15.99■□□□□ 0.15
CLN3-219ENST00000565778 KCTD9Q7L273 389 aa15.99■□□□□ 0.15
CLN3-219ENST00000565778 SLC25A38Q96DW6 304 aa15.99■□□□□ 0.15
CLN3-219ENST00000565778 LSM4Q9Y4Z0 139 aaKnown RBP15.99■□□□□ 0.15
CLN3-219ENST00000565778 A0A0A6YYH2 397 aa15.98■□□□□ 0.15
CLN3-219ENST00000565778 IGKV1D-13A0A0B4J2D9 117 aa15.98■□□□□ 0.15
CLN3-219ENST00000565778 A6NJ64 397 aa15.98■□□□□ 0.15
CLN3-219ENST00000565778 APELAP0DMC3 54 aa15.98■□□□□ 0.15
CLN3-219ENST00000565778 IGKV1-13P0DP09 117 aa15.98■□□□□ 0.15
CLN3-219ENST00000565778 PRSS8Q16651 343 aa15.98■□□□□ 0.15
CLN3-219ENST00000565778 OR2B11Q5JQS5 317 aa15.98■□□□□ 0.15
CLN3-219ENST00000565778 GVQW1Q8N7I0 195 aa15.98■□□□□ 0.15
CLN3-219ENST00000565778 BEST4Q8NFU0 473 aa15.98■□□□□ 0.15
CLN3-219ENST00000565778 ACOT12Q8WYK0 555 aa15.98■□□□□ 0.15
CLN3-219ENST00000565778 RANGRFQ9HD47 186 aaPredicted RBP15.98■□□□□ 0.15
CLN3-219ENST00000565778 COA4Q9NYJ1 87 aa15.98■□□□□ 0.15
CLN3-219ENST00000565778 SPATA2Q9UM82 520 aa15.98■□□□□ 0.15
CLN3-219ENST00000565778 MRPS7Q9Y2R9 242 aaKnown RBP15.98■□□□□ 0.15
CLN3-219ENST00000565778 ANKRD34BA5PLL1 514 aa15.97■□□□□ 0.15
CLN3-219ENST00000565778 ACTL6BO94805 426 aa15.97■□□□□ 0.15
CLN3-219ENST00000565778 RPL30P62888 115 aaKnown RBP15.97■□□□□ 0.15
CLN3-219ENST00000565778 MRGPRG-AS1Q2M3A8 158 aa15.97■□□□□ 0.15
CLN3-219ENST00000565778 ACSM6Q6P461 480 aa15.97■□□□□ 0.15
CLN3-219ENST00000565778 TSPAN14Q8NG11 270 aa15.97■□□□□ 0.15
CLN3-219ENST00000565778 OR4C12Q96R67 309 aa15.97■□□□□ 0.15
CLN3-219ENST00000565778 VCX3AQ9NNX9 186 aa15.97■□□□□ 0.15
CLN3-219ENST00000565778 A0A087WXM4 84 aa15.96■□□□□ 0.15
CLN3-219ENST00000565778 MPPED1O15442 326 aa15.96■□□□□ 0.15
CLN3-219ENST00000565778 AIREO43918 545 aa15.96■□□□□ 0.15
CLN3-219ENST00000565778 TMEM127O75204 238 aa15.96■□□□□ 0.15
CLN3-219ENST00000565778 IGLV2-14P01704 120 aa15.96■□□□□ 0.15
CLN3-219ENST00000565778 FCER2P06734 321 aa15.96■□□□□ 0.15
CLN3-219ENST00000565778 AADACP22760 399 aa15.96■□□□□ 0.15
CLN3-219ENST00000565778 TGFBR1P36897 503 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms