RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 J3QRK9 145 aa13.05□□□□□ -0.32
CLK3-210ENST00000563112 SLC22A5O76082 557 aa13.05□□□□□ -0.32
CLK3-210ENST00000563112 IGLV2-23P01705 113 aa13.05□□□□□ -0.32
CLK3-210ENST00000563112 TRGV3P03979 118 aa13.05□□□□□ -0.32
CLK3-210ENST00000563112 DUTP33316 252 aaKnown RBP13.05□□□□□ -0.32
CLK3-210ENST00000563112 VMA21Q3ZAQ7 101 aa13.05□□□□□ -0.32
CLK3-210ENST00000563112 IDNKQ5T6J7 187 aa13.05□□□□□ -0.32
CLK3-210ENST00000563112 ASPHD1Q5U4P2 390 aa13.05□□□□□ -0.32
CLK3-210ENST00000563112 CNIH2Q6PI25 160 aa13.05□□□□□ -0.32
CLK3-210ENST00000563112 DCUN1D4Q92564 292 aa13.05□□□□□ -0.32
CLK3-210ENST00000563112 C5orf30Q96GV9 206 aa13.05□□□□□ -0.32
CLK3-210ENST00000563112 TMEM68Q96MH6 324 aa13.05□□□□□ -0.32
CLK3-210ENST00000563112 ALX4Q9H161 411 aaPredicted RBP13.05□□□□□ -0.32
CLK3-210ENST00000563112 SCOCQ9UIL1 159 aa13.05□□□□□ -0.32
CLK3-210ENST00000563112 OR2W1Q9Y3N9 320 aa13.05□□□□□ -0.32
CLK3-210ENST00000563112 H3BUA1 57 aa13.04□□□□□ -0.32
CLK3-210ENST00000563112 ARPC1BO15143 372 aaKnown RBP13.04□□□□□ -0.32
CLK3-210ENST00000563112 IGHV3-11P01762 117 aa13.04□□□□□ -0.32
CLK3-210ENST00000563112 HSPB1P04792 205 aaKnown RBP13.04□□□□□ -0.32
CLK3-210ENST00000563112 CRYGBP07316 175 aa13.04□□□□□ -0.32
CLK3-210ENST00000563112 CLEC2LP0C7M8 214 aa13.04□□□□□ -0.32
CLK3-210ENST00000563112 ZNF429Q86V71 674 aa13.04□□□□□ -0.32
CLK3-210ENST00000563112 ZNF645Q8N7E2 425 aa13.04□□□□□ -0.32
CLK3-210ENST00000563112 TEX45Q8NA69 505 aa13.04□□□□□ -0.32
CLK3-210ENST00000563112 POC5Q8NA72 575 aa13.04□□□□□ -0.32
CLK3-210ENST00000563112 OR5T1Q8NG75 326 aa13.04□□□□□ -0.32
CLK3-210ENST00000563112 B9D2Q9BPU9 175 aa13.04□□□□□ -0.32
CLK3-210ENST00000563112 RNF167Q9H6Y7 350 aa13.04□□□□□ -0.32
CLK3-210ENST00000563112 COL7A1Q02388 2944 aa13.04□□□□□ -0.32
CLK3-210ENST00000563112 TRAV18A0A075B6X5 111 aa13.03□□□□□ -0.32
CLK3-210ENST00000563112 A0A0G2JLM5 398 aa13.03□□□□□ -0.32
CLK3-210ENST00000563112 C13orf42A0A1B0GVH6 325 aa13.03□□□□□ -0.32
CLK3-210ENST00000563112 TMEM127O75204 238 aa13.03□□□□□ -0.32
CLK3-210ENST00000563112 CRYZL1O95825 349 aa13.03□□□□□ -0.32
CLK3-210ENST00000563112 HLA-DQB1P01920 261 aa13.03□□□□□ -0.32
CLK3-210ENST00000563112 NFYAP23511 347 aaPredicted RBP13.03□□□□□ -0.32
CLK3-210ENST00000563112 PJVKQ0ZLH3 352 aa13.03□□□□□ -0.32
CLK3-210ENST00000563112 TIMM50Q3ZCQ8 353 aa13.03□□□□□ -0.32
CLK3-210ENST00000563112 OSR1Q8TAX0 266 aaPredicted RBP13.03□□□□□ -0.32
CLK3-210ENST00000563112 DDB2Q92466 427 aa13.03□□□□□ -0.32
CLK3-210ENST00000563112 DLX4Q92988 240 aaPredicted RBP13.03□□□□□ -0.32
CLK3-210ENST00000563112 RHOVQ96L33 236 aa13.03□□□□□ -0.32
CLK3-210ENST00000563112 PRR25Q96S07 402 aa13.03□□□□□ -0.32
CLK3-210ENST00000563112 VCX3AQ9NNX9 186 aa13.03□□□□□ -0.32
CLK3-210ENST00000563112 DIABLOQ9NR28 239 aa13.03□□□□□ -0.32
CLK3-210ENST00000563112 ANXA10Q9UJ72 324 aa13.03□□□□□ -0.32
CLK3-210ENST00000563112 ZNF256Q9Y2P7 627 aaPredicted RBP13.03□□□□□ -0.32
CLK3-210ENST00000563112 PRELID3BQ9Y3B1 194 aa13.03□□□□□ -0.32
CLK3-210ENST00000563112 IGHV4OR15-8A0A075B7B6 117 aa13.02□□□□□ -0.33
CLK3-210ENST00000563112 A0A087WW49 117 aa13.02□□□□□ -0.33
CLK3-210ENST00000563112 A0A0A6YYH2 397 aa13.02□□□□□ -0.33
CLK3-210ENST00000563112 A6NJ64 397 aa13.02□□□□□ -0.33
CLK3-210ENST00000563112 SRRM4A7MD48 611 aaKnown RBP13.02□□□□□ -0.33
CLK3-210ENST00000563112 LINC00473A8K010 186 aa13.02□□□□□ -0.33
CLK3-210ENST00000563112 SAP30O75446 220 aa13.02□□□□□ -0.33
CLK3-210ENST00000563112 SLURP1P55000 103 aa13.02□□□□□ -0.33
CLK3-210ENST00000563112 UBE2KP61086 200 aa13.02□□□□□ -0.33
CLK3-210ENST00000563112 VAX1Q5SQQ9 334 aa13.02□□□□□ -0.33
CLK3-210ENST00000563112 OR5H6Q8NGV6 325 aa13.02□□□□□ -0.33
CLK3-210ENST00000563112 PHB2Q99623 299 aa13.02□□□□□ -0.33
CLK3-210ENST00000563112 DCUN1D5Q9BTE7 237 aa13.02□□□□□ -0.33
CLK3-210ENST00000563112 MRPS7Q9Y2R9 242 aaKnown RBP13.02□□□□□ -0.33
CLK3-210ENST00000563112 SORL1Q92673 2214 aa13.02□□□□□ -0.33
CLK3-210ENST00000563112 SSX5O60225 188 aa13.01□□□□□ -0.33
CLK3-210ENST00000563112 CREBL2O60519 120 aaPredicted RBP13.01□□□□□ -0.33
CLK3-210ENST00000563112 FCGR3BO75015 233 aa13.01□□□□□ -0.33
CLK3-210ENST00000563112 TUSC2O75896 110 aa13.01□□□□□ -0.33
CLK3-210ENST00000563112 LY86O95711 162 aa13.01□□□□□ -0.33
CLK3-210ENST00000563112 ARPC4P59998 168 aa13.01□□□□□ -0.33
CLK3-210ENST00000563112 TNXAQ16473 311 aa13.01□□□□□ -0.33
CLK3-210ENST00000563112 KCTD9Q7L273 389 aa13.01□□□□□ -0.33
CLK3-210ENST00000563112 CROCCP3Q8IVE0 287 aa13.01□□□□□ -0.33
CLK3-210ENST00000563112 RBMX2Q9Y388 322 aaKnown RBP13.01□□□□□ -0.33
CLK3-210ENST00000563112 ACTL6BO94805 426 aa13□□□□□ -0.33
CLK3-210ENST00000563112 SSBP2P81877 361 aaPredicted RBP13□□□□□ -0.33
CLK3-210ENST00000563112 PRSS8Q16651 343 aa13□□□□□ -0.33
CLK3-210ENST00000563112 BEST4Q8NFU0 473 aa13□□□□□ -0.33
CLK3-210ENST00000563112 ACOT12Q8WYK0 555 aa13□□□□□ -0.33
CLK3-210ENST00000563112 SLC25A38Q96DW6 304 aa13□□□□□ -0.33
CLK3-210ENST00000563112 HSD17B10Q99714 261 aaKnown RBP13□□□□□ -0.33
CLK3-210ENST00000563112 RANGRFQ9HD47 186 aaPredicted RBP13□□□□□ -0.33
CLK3-210ENST00000563112 COA4Q9NYJ1 87 aa13□□□□□ -0.33
CLK3-210ENST00000563112 SPATA2Q9UM82 520 aa13□□□□□ -0.33
CLK3-210ENST00000563112 LSM4Q9Y4Z0 139 aaKnown RBP13□□□□□ -0.33
CLK3-210ENST00000563112 A0A087WXM4 84 aa12.99□□□□□ -0.33
CLK3-210ENST00000563112 MSGN1A6NI15 193 aa12.99□□□□□ -0.33
CLK3-210ENST00000563112 MPPED1O15442 326 aa12.99□□□□□ -0.33
CLK3-210ENST00000563112 BRI3O95415 125 aa12.99□□□□□ -0.33
CLK3-210ENST00000563112 AADACP22760 399 aa12.99□□□□□ -0.33
CLK3-210ENST00000563112 OR4C12Q96R67 309 aa12.99□□□□□ -0.33
CLK3-210ENST00000563112 ELOVL1Q9BW60 279 aa12.99□□□□□ -0.33
CLK3-210ENST00000563112 TINAGL1Q9GZM7 467 aaPredicted RBP12.99□□□□□ -0.33
CLK3-210ENST00000563112 AUNIPQ9H7T9 357 aa12.99□□□□□ -0.33
CLK3-210ENST00000563112 TNCP24821 2201 aa12.98□□□□□ -0.33
CLK3-210ENST00000563112 IGKV1D-13A0A0B4J2D9 117 aa12.98□□□□□ -0.33
CLK3-210ENST00000563112 AIREO43918 545 aa12.98□□□□□ -0.33
CLK3-210ENST00000563112 TNFAIP8O95379 198 aa12.98□□□□□ -0.33
CLK3-210ENST00000563112 NHLRC4P0CG21 123 aaPredicted RBP12.98□□□□□ -0.33
CLK3-210ENST00000563112 IGKV1-13P0DP09 117 aa12.98□□□□□ -0.33
CLK3-210ENST00000563112 ZP3P21754 424 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms