RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 TMEM108Q6UXF1 575 aa11.24□□□□□ -0.61
CLK3-206ENST00000562078 ZIC4Q8N9L1 334 aa11.24□□□□□ -0.61
CLK3-206ENST00000562078 MRPL18Q9H0U6 180 aaKnown RBP11.24□□□□□ -0.61
CLK3-206ENST00000562078 TAAR3PQ9P1P4 343 aa11.24□□□□□ -0.61
CLK3-206ENST00000562078 TP73-AS1Q9UF72 201 aa11.24□□□□□ -0.61
CLK3-206ENST00000562078 CEP250Q9BV73 2442 aa11.24□□□□□ -0.61
CLK3-206ENST00000562078 FREM1Q5H8C1 2179 aa11.24□□□□□ -0.61
CLK3-206ENST00000562078 VENTXO95231 258 aa11.24□□□□□ -0.61
CLK3-206ENST00000562078 SRD5A2P31213 254 aa11.24□□□□□ -0.61
CLK3-206ENST00000562078 HERV-K104P61576 105 aa11.24□□□□□ -0.61
CLK3-206ENST00000562078 PSG4Q00888 419 aa11.24□□□□□ -0.61
CLK3-206ENST00000562078 RSPO4Q2I0M5 234 aaPredicted RBP11.24□□□□□ -0.61
CLK3-206ENST00000562078 SPIN3Q5JUX0 258 aa11.24□□□□□ -0.61
CLK3-206ENST00000562078 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.24□□□□□ -0.61
CLK3-206ENST00000562078 MOB1AQ9H8S9 216 aa11.24□□□□□ -0.61
CLK3-206ENST00000562078 DEPPQ9NTK1 212 aa11.24□□□□□ -0.61
CLK3-206ENST00000562078 OR2T8A6NH00 312 aa11.23□□□□□ -0.61
CLK3-206ENST00000562078 FRMD6-AS1P0C7T7 363 aa11.23□□□□□ -0.61
CLK3-206ENST00000562078 PMCHP20382 165 aa11.23□□□□□ -0.61
CLK3-206ENST00000562078 GNRHRP30968 328 aa11.23□□□□□ -0.61
CLK3-206ENST00000562078 CLDN18P56856 261 aa11.23□□□□□ -0.61
CLK3-206ENST00000562078 NIT1Q86X76 327 aa11.23□□□□□ -0.61
CLK3-206ENST00000562078 KLHDC1Q8N7A1 406 aa11.23□□□□□ -0.61
CLK3-206ENST00000562078 ZNF114Q8NC26 417 aa11.23□□□□□ -0.61
CLK3-206ENST00000562078 OR4F17Q8NGA8 305 aa11.23□□□□□ -0.61
CLK3-206ENST00000562078 Q96M66 194 aa11.23□□□□□ -0.61
CLK3-206ENST00000562078 PSMG3Q9BT73 122 aaPredicted RBP11.23□□□□□ -0.61
CLK3-206ENST00000562078 FAM166BA8MTA8 275 aa11.23□□□□□ -0.61
CLK3-206ENST00000562078 ANGPTL7O43827 346 aa11.23□□□□□ -0.61
CLK3-206ENST00000562078 PAGE4O60829 102 aa11.23□□□□□ -0.61
CLK3-206ENST00000562078 ZNF253O75346 499 aa11.23□□□□□ -0.61
CLK3-206ENST00000562078 MSR1P21757 451 aa11.23□□□□□ -0.61
CLK3-206ENST00000562078 AMTP48728 403 aa11.23□□□□□ -0.61
CLK3-206ENST00000562078 SRPXP78539 464 aa11.23□□□□□ -0.61
CLK3-206ENST00000562078 IZUMO4Q1ZYL8 232 aa11.23□□□□□ -0.61
CLK3-206ENST00000562078 AMMECR1LQ6DCA0 310 aa11.23□□□□□ -0.61
CLK3-206ENST00000562078 HAPLN4Q86UW8 402 aa11.23□□□□□ -0.61
CLK3-206ENST00000562078 DTX1Q86Y01 620 aa11.23□□□□□ -0.61
CLK3-206ENST00000562078 ZNF525Q8N782 197 aa11.23□□□□□ -0.61
CLK3-206ENST00000562078 TCTEX1D1Q8N7M0 179 aa11.23□□□□□ -0.61
CLK3-206ENST00000562078 TMEM54Q969K7 222 aa11.23□□□□□ -0.61
CLK3-206ENST00000562078 ABHD14BQ96IU4 210 aa11.23□□□□□ -0.61
CLK3-206ENST00000562078 DERL1Q9BUN8 251 aa11.23□□□□□ -0.61
CLK3-206ENST00000562078 SF3B5Q9BWJ5 86 aaKnown RBP11.23□□□□□ -0.61
CLK3-206ENST00000562078 GTF3C1Q12789 2109 aa11.22□□□□□ -0.61
CLK3-206ENST00000562078 GAGE12BA1L429 117 aa11.22□□□□□ -0.61
CLK3-206ENST00000562078 DPRXA6NFQ7 191 aa11.22□□□□□ -0.61
CLK3-206ENST00000562078 GJE1A6NN92 205 aa11.22□□□□□ -0.61
CLK3-206ENST00000562078 RBFOX2O43251 390 aaKnown RBP eCLIP11.22□□□□□ -0.61
CLK3-206ENST00000562078 PPYP01298 95 aa11.22□□□□□ -0.61
CLK3-206ENST00000562078 GUCA1AP43080 201 aaPredicted RBP11.22□□□□□ -0.61
CLK3-206ENST00000562078 CYB561P49447 251 aa11.22□□□□□ -0.61
CLK3-206ENST00000562078 SERF2P84101 59 aa11.22□□□□□ -0.61
CLK3-206ENST00000562078 NHLH1Q02575 133 aa11.22□□□□□ -0.61
CLK3-206ENST00000562078 WIPI1Q5MNZ9 446 aaPredicted RBP11.22□□□□□ -0.61
CLK3-206ENST00000562078 C10orf128Q5T292 105 aa11.22□□□□□ -0.61
CLK3-206ENST00000562078 OR10V1Q8NGI7 309 aa11.22□□□□□ -0.61
CLK3-206ENST00000562078 PTPRZ1P23471 2315 aaPredicted RBP11.22□□□□□ -0.61
CLK3-206ENST00000562078 PINLYPA6NC86 204 aa11.21□□□□□ -0.61
CLK3-206ENST00000562078 TAX1BP3O14907 124 aa11.21□□□□□ -0.61
CLK3-206ENST00000562078 NRASP01111 189 aa11.21□□□□□ -0.61
CLK3-206ENST00000562078 KRASP01116 189 aa11.21□□□□□ -0.61
CLK3-206ENST00000562078 C3orf79P0CE67 100 aa11.21□□□□□ -0.61
CLK3-206ENST00000562078 CD99P14209 185 aa11.21□□□□□ -0.61
CLK3-206ENST00000562078 RPS20P60866 119 aaKnown RBP11.21□□□□□ -0.61
CLK3-206ENST00000562078 LRRC75BQ2VPJ9 315 aa11.21□□□□□ -0.61
CLK3-206ENST00000562078 SMIM21Q3B7S5 101 aa11.21□□□□□ -0.61
CLK3-206ENST00000562078 ACSF3Q4G176 576 aaPredicted RBP11.21□□□□□ -0.61
CLK3-206ENST00000562078 LCN12Q6JVE5 192 aa11.21□□□□□ -0.61
CLK3-206ENST00000562078 GGNQ86UU5 652 aa11.21□□□□□ -0.61
CLK3-206ENST00000562078 NABP1Q96AH0 204 aa11.21□□□□□ -0.61
CLK3-206ENST00000562078 NEIL1Q96FI4 390 aaPredicted RBP11.21□□□□□ -0.61
CLK3-206ENST00000562078 ULBP2Q9BZM5 246 aa11.21□□□□□ -0.61
CLK3-206ENST00000562078 GNB4Q9HAV0 340 aa11.21□□□□□ -0.61
CLK3-206ENST00000562078 DLL3Q9NYJ7 618 aa11.21□□□□□ -0.61
CLK3-206ENST00000562078 A0A0G2JRQ6 117 aa11.21□□□□□ -0.61
CLK3-206ENST00000562078 CORTO00230 105 aa11.21□□□□□ -0.61
CLK3-206ENST00000562078 CRYAAP02489 173 aa11.21□□□□□ -0.61
CLK3-206ENST00000562078 CTXN2P0C2S0 81 aa11.21□□□□□ -0.61
CLK3-206ENST00000562078 IAPPP10997 89 aa11.21□□□□□ -0.61
CLK3-206ENST00000562078 GDF1P27539 372 aa11.21□□□□□ -0.61
CLK3-206ENST00000562078 GFRA1P56159 465 aa11.21□□□□□ -0.61
CLK3-206ENST00000562078 GRB2P62993 217 aaKnown RBP11.21□□□□□ -0.61
CLK3-206ENST00000562078 Q6ZPA2 131 aa11.21□□□□□ -0.61
CLK3-206ENST00000562078 OR52L2PQ8NGH6 319 aa11.21□□□□□ -0.61
CLK3-206ENST00000562078 OR5P3Q8WZ94 311 aa11.21□□□□□ -0.61
CLK3-206ENST00000562078 SARAFQ96BY9 339 aa11.21□□□□□ -0.61
CLK3-206ENST00000562078 ZNF837Q96EG3 531 aaPredicted RBP11.21□□□□□ -0.61
CLK3-206ENST00000562078 DHHO43323 396 aa11.2□□□□□ -0.62
CLK3-206ENST00000562078 VDAC1P21796 283 aa11.2□□□□□ -0.62
CLK3-206ENST00000562078 GABRA2P47869 451 aa11.2□□□□□ -0.62
CLK3-206ENST00000562078 RAC3P60763 192 aa11.2□□□□□ -0.62
CLK3-206ENST00000562078 PDCD1Q15116 288 aa11.2□□□□□ -0.62
CLK3-206ENST00000562078 SPINK14Q6IE38 97 aa11.2□□□□□ -0.62
CLK3-206ENST00000562078 DOK3Q7L591 496 aa11.2□□□□□ -0.62
CLK3-206ENST00000562078 MUC15Q8N387 334 aa11.2□□□□□ -0.62
CLK3-206ENST00000562078 ZC2HC1AQ96GY0 325 aa11.2□□□□□ -0.62
CLK3-206ENST00000562078 SFRP2Q96HF1 295 aa11.2□□□□□ -0.62
CLK3-206ENST00000562078 RCHY1Q96PM5 261 aa11.2□□□□□ -0.62
CLK3-206ENST00000562078 MRPL27Q9P0M9 148 aaKnown RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms