RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 RLN1P04808 185 aa8.05□□□□□ -1.12
USP3-216ENST00000559873 HKR1P10072 659 aa8.05□□□□□ -1.12
USP3-216ENST00000559873 GNRHRP30968 328 aa8.05□□□□□ -1.12
USP3-216ENST00000559873 LGALS7P47929 136 aa8.05□□□□□ -1.12
USP3-216ENST00000559873 SRSF2Q01130 221 aaKnown RBP8.05□□□□□ -1.12
USP3-216ENST00000559873 PLGLAQ15195 96 aa8.05□□□□□ -1.12
USP3-216ENST00000559873 BAK1Q16611 211 aa8.05□□□□□ -1.12
USP3-216ENST00000559873 KRTAP24-1Q3LI83 254 aa8.05□□□□□ -1.12
USP3-216ENST00000559873 TMEM177Q53S58 311 aa8.05□□□□□ -1.12
USP3-216ENST00000559873 FAAP20Q6NZ36 180 aa8.05□□□□□ -1.12
USP3-216ENST00000559873 DDB2Q92466 427 aa8.05□□□□□ -1.12
USP3-216ENST00000559873 C5orf30Q96GV9 206 aa8.05□□□□□ -1.12
USP3-216ENST00000559873 AIFM2Q9BRQ8 373 aa8.05□□□□□ -1.12
USP3-216ENST00000559873 BEX1Q9HBH7 125 aa8.05□□□□□ -1.12
USP3-216ENST00000559873 HRASLSQ9HDD0 168 aa8.05□□□□□ -1.12
USP3-216ENST00000559873 SLC2A9Q9NRM0 540 aa8.05□□□□□ -1.12
USP3-216ENST00000559873 COPZ2Q9P299 210 aa8.05□□□□□ -1.12
USP3-216ENST00000559873 LINC00473A8K010 186 aa8.04□□□□□ -1.12
USP3-216ENST00000559873 RBFOX2O43251 390 aaKnown RBP eCLIP8.04□□□□□ -1.129e-6■□□□□ 10.4
USP3-216ENST00000559873 KCNAB3O43448 404 aa8.04□□□□□ -1.12
USP3-216ENST00000559873 PEX14O75381 377 aa8.04□□□□□ -1.12
USP3-216ENST00000559873 B3GALNT1O75752 331 aa8.04□□□□□ -1.12
USP3-216ENST00000559873 TSPAN9O75954 239 aa8.04□□□□□ -1.12
USP3-216ENST00000559873 CRYZL1O95825 349 aa8.04□□□□□ -1.12
USP3-216ENST00000559873 IGKV1-16P04430 117 aa8.04□□□□□ -1.12
USP3-216ENST00000559873 CTSDP07339 412 aaPredicted RBP8.04□□□□□ -1.12
USP3-216ENST00000559873 ZNF735P0CB33 412 aa8.04□□□□□ -1.12
USP3-216ENST00000559873 PIGPP57054 158 aa8.04□□□□□ -1.12
USP3-216ENST00000559873 RND3P61587 244 aa8.04□□□□□ -1.12
USP3-216ENST00000559873 RPS16P62249 146 aaKnown RBP8.04□□□□□ -1.12
USP3-216ENST00000559873 VMA21Q3ZAQ7 101 aa8.04□□□□□ -1.12
USP3-216ENST00000559873 C9orf152Q5JTZ5 239 aa8.04□□□□□ -1.12
USP3-216ENST00000559873 CCBE1Q6UXH8 406 aaPredicted RBP8.04□□□□□ -1.12
USP3-216ENST00000559873 C5orf56Q8N8D9 126 aa8.04□□□□□ -1.12
USP3-216ENST00000559873 NPBQ8NG41 125 aa8.04□□□□□ -1.12
USP3-216ENST00000559873 OR13C8Q8NGS7 320 aa8.04□□□□□ -1.12
USP3-216ENST00000559873 OR51H1Q8NH63 302 aa8.04□□□□□ -1.12
USP3-216ENST00000559873 SLC25A21Q9BQT8 299 aaPredicted RBP8.04□□□□□ -1.12
USP3-216ENST00000559873 C19orf24Q9BVV8 132 aa8.04□□□□□ -1.12
USP3-216ENST00000559873 NDUFA3O95167 84 aa8.03□□□□□ -1.12
USP3-216ENST00000559873 HRASP01112 189 aa8.03□□□□□ -1.12
USP3-216ENST00000559873 F2RP25116 425 aa8.03□□□□□ -1.12
USP3-216ENST00000559873 VDAC2P45880 294 aaPredicted RBP8.03□□□□□ -1.12
USP3-216ENST00000559873 ERVK-16P61578 105 aa8.03□□□□□ -1.12
USP3-216ENST00000559873 EIF4EBP1Q13541 118 aaPredicted RBP8.03□□□□□ -1.12
USP3-216ENST00000559873 RBMS2Q15434 407 aaKnown RBP8.03□□□□□ -1.12
USP3-216ENST00000559873 PHLDA2Q53GA4 152 aa8.03□□□□□ -1.12
USP3-216ENST00000559873 OR2B11Q5JQS5 317 aa8.03□□□□□ -1.12
USP3-216ENST00000559873 Q6ZSV7 163 aa8.03□□□□□ -1.12
USP3-216ENST00000559873 TBC1D26Q86UD7 250 aa8.03□□□□□ -1.12
USP3-216ENST00000559873 FOXRED2Q8IWF2 684 aa8.03□□□□□ -1.12
USP3-216ENST00000559873 SPAG16Q8N0X2 631 aa8.03□□□□□ -1.12
USP3-216ENST00000559873 FAM71E2Q8N5Q1 922 aa8.03□□□□□ -1.12
USP3-216ENST00000559873 VSTM2AQ8TAG5 236 aa8.03□□□□□ -1.12
USP3-216ENST00000559873 MARCH1Q8TCQ1 289 aa8.03□□□□□ -1.12
USP3-216ENST00000559873 SDHCQ99643 169 aaPredicted RBP8.03□□□□□ -1.12
USP3-216ENST00000559873 C16orf95Q9H693 158 aa8.03□□□□□ -1.12
USP3-216ENST00000559873 FAM212BQ9NTI7 297 aaPredicted RBP8.03□□□□□ -1.12
USP3-216ENST00000559873 COMMD9Q9P000 198 aa8.03□□□□□ -1.12
USP3-216ENST00000559873 MMP24Q9Y5R2 645 aa8.03□□□□□ -1.12
USP3-216ENST00000559873 COL6A5A8TX70 2615 aa8.03□□□□□ -1.12
USP3-216ENST00000559873 PIGBOS1A0A0B4J2F0 54 aa8.02□□□□□ -1.13
USP3-216ENST00000559873 TMEM89A2RUT3 159 aa8.02□□□□□ -1.13
USP3-216ENST00000559873 CLPSL1A2RUU4 121 aa8.02□□□□□ -1.13
USP3-216ENST00000559873 RRHO14718 337 aa8.02□□□□□ -1.13
USP3-216ENST00000559873 PGLYRP1O75594 196 aaPredicted RBP8.02□□□□□ -1.13
USP3-216ENST00000559873 ATG12O94817 140 aa8.02□□□□□ -1.13
USP3-216ENST00000559873 HPRT1P00492 218 aa8.02□□□□□ -1.13
USP3-216ENST00000559873 HLA-DRB1P01911 266 aa8.02□□□□□ -1.13
USP3-216ENST00000559873 ANXA3P12429 323 aa8.02□□□□□ -1.13
USP3-216ENST00000559873 RPA2P15927 270 aa8.02□□□□□ -1.13
USP3-216ENST00000559873 NQO2P16083 231 aa8.02□□□□□ -1.13
USP3-216ENST00000559873 TAS2R31P59538 309 aa8.02□□□□□ -1.13
USP3-216ENST00000559873 DEFA1P59665 94 aa8.02□□□□□ -1.13
USP3-216ENST00000559873 DEFA3P59666 94 aa8.02□□□□□ -1.13
USP3-216ENST00000559873 UBE2KP61086 200 aa8.02□□□□□ -1.13
USP3-216ENST00000559873 RPL30P62888 115 aaKnown RBP8.02□□□□□ -1.13
USP3-216ENST00000559873 C5orf64Q2M2E5 130 aa8.02□□□□□ -1.13
USP3-216ENST00000559873 LIN54Q6MZP7 749 aa8.02□□□□□ -1.13
USP3-216ENST00000559873 MZT2BQ6NZ67 158 aa8.02□□□□□ -1.13
USP3-216ENST00000559873 SLC35E3Q7Z769 313 aa8.02□□□□□ -1.13
USP3-216ENST00000559873 Q8N2B8 174 aa8.02□□□□□ -1.13
USP3-216ENST00000559873 Q8N9W7 124 aa8.02□□□□□ -1.13
USP3-216ENST00000559873 ZNF702PQ9H963 129 aa8.02□□□□□ -1.13
USP3-216ENST00000559873 METTL1Q9UBP6 276 aaKnown RBP8.02□□□□□ -1.13
USP3-216ENST00000559873 TEX13DA0A0J9YY54 714 aaPredicted RBP8.01□□□□□ -1.13
USP3-216ENST00000559873 LINC00854A0A1B0GVQ3 168 aa8.01□□□□□ -1.13
USP3-216ENST00000559873 H0Y980 276 aa8.01□□□□□ -1.13
USP3-216ENST00000559873 MPPED1O15442 326 aa8.01□□□□□ -1.13
USP3-216ENST00000559873 LYRM1O43325 122 aa8.01□□□□□ -1.13
USP3-216ENST00000559873 SLC25A17O43808 307 aa8.01□□□□□ -1.13
USP3-216ENST00000559873 UPK1BO75841 260 aa8.01□□□□□ -1.13
USP3-216ENST00000559873 ACTL6BO94805 426 aa8.01□□□□□ -1.13
USP3-216ENST00000559873 SERPINE2P07093 398 aa8.01□□□□□ -1.13
USP3-216ENST00000559873 PI3P19957 117 aa8.01□□□□□ -1.13
USP3-216ENST00000559873 COMPP49747 757 aaPredicted RBP8.01□□□□□ -1.13
USP3-216ENST00000559873 F2RL1P55085 397 aa8.01□□□□□ -1.13
USP3-216ENST00000559873 LINC00205P59089 165 aa8.01□□□□□ -1.13
USP3-216ENST00000559873 BLCAPP62952 87 aa8.01□□□□□ -1.13
USP3-216ENST00000559873 RELBQ01201 579 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms