RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 SLC35E4Q6ICL7 350 aa10.73□□□□□ -0.69
LDLR-207ENST00000558013 OR10P1Q8NGE3 313 aa10.73□□□□□ -0.69
LDLR-207ENST00000558013 NPCDR1Q9BY65 106 aa10.73□□□□□ -0.69
LDLR-207ENST00000558013 DUSP13Q9UII6 198 aa10.73□□□□□ -0.69
LDLR-207ENST00000558013 RNF212BA8MTL3 300 aa10.73□□□□□ -0.69
LDLR-207ENST00000558013 PPP1R2P9O14990 202 aa10.73□□□□□ -0.69
LDLR-207ENST00000558013 IGKV3-15P01624 115 aa10.73□□□□□ -0.69
LDLR-207ENST00000558013 NPPCP23582 126 aa10.73□□□□□ -0.69
LDLR-207ENST00000558013 RND2P52198 227 aa10.73□□□□□ -0.69
LDLR-207ENST00000558013 RPL39P5Q59GN2 51 aa10.73□□□□□ -0.69
LDLR-207ENST00000558013 PINX1Q96BK5 328 aaKnown RBP10.73□□□□□ -0.69
LDLR-207ENST00000558013 TMEM204Q9BSN7 226 aa10.73□□□□□ -0.69
LDLR-207ENST00000558013 PARLQ9H300 379 aa10.73□□□□□ -0.69
LDLR-207ENST00000558013 ZFHX2Q9C0A1 2572 aaPredicted RBP10.73□□□□□ -0.69
LDLR-207ENST00000558013 TRAV3A0A0B4J244 114 aa10.73□□□□□ -0.69
LDLR-207ENST00000558013 B4DEV8 164 aa10.73□□□□□ -0.69
LDLR-207ENST00000558013 FCGR3BO75015 233 aa10.73□□□□□ -0.69
LDLR-207ENST00000558013 UBE2G2P60604 165 aa10.73□□□□□ -0.69
LDLR-207ENST00000558013 RPL23P62829 140 aaKnown RBP10.73□□□□□ -0.69
LDLR-207ENST00000558013 MSMO1Q15800 293 aa10.73□□□□□ -0.69
LDLR-207ENST00000558013 INO80CQ6PI98 192 aaPredicted RBP10.73□□□□□ -0.69
LDLR-207ENST00000558013 C1orf229Q6ZS94 237 aaPredicted RBP10.73□□□□□ -0.69
LDLR-207ENST00000558013 ZNRF1Q8ND25 227 aa10.73□□□□□ -0.69
LDLR-207ENST00000558013 OR2Z1Q8NG97 314 aa10.73□□□□□ -0.69
LDLR-207ENST00000558013 LRRC29Q8WV35 223 aa10.73□□□□□ -0.69
LDLR-207ENST00000558013 GAB2Q9UQC2 676 aa10.73□□□□□ -0.69
LDLR-207ENST00000558013 HCFC1P51610 2035 aa10.73□□□□□ -0.69
LDLR-207ENST00000558013 ANKRD11Q6UB99 2663 aaPredicted RBP10.72□□□□□ -0.69
LDLR-207ENST00000558013 PGPEP1LA6NFU8 196 aa10.72□□□□□ -0.69
LDLR-207ENST00000558013 SEC14L6B5MCN3 397 aa10.72□□□□□ -0.69
LDLR-207ENST00000558013 SELLP14151 372 aa10.72□□□□□ -0.69
LDLR-207ENST00000558013 ZNF134P52741 427 aa10.72□□□□□ -0.69
LDLR-207ENST00000558013 PNRC1Q12796 327 aaPredicted RBP10.72□□□□□ -0.69
LDLR-207ENST00000558013 TMEM241Q24JQ0 296 aa10.72□□□□□ -0.69
LDLR-207ENST00000558013 Q8TCH9 128 aa10.72□□□□□ -0.69
LDLR-207ENST00000558013 TMEM147Q9BVK8 224 aa10.72□□□□□ -0.69
LDLR-207ENST00000558013 TMEM210A6NLX4 147 aa10.72□□□□□ -0.69
LDLR-207ENST00000558013 FAM90A26D6RGX4 464 aa10.72□□□□□ -0.69
LDLR-207ENST00000558013 CLDN14O95500 239 aa10.72□□□□□ -0.69
LDLR-207ENST00000558013 Q8N7P7 452 aa10.72□□□□□ -0.69
LDLR-207ENST00000558013 OR4X1Q8NH49 305 aa10.72□□□□□ -0.69
LDLR-207ENST00000558013 MEGF10Q96KG7 1140 aa10.72□□□□□ -0.69
LDLR-207ENST00000558013 DERL1Q9BUN8 251 aa10.72□□□□□ -0.69
LDLR-207ENST00000558013 CXXC4Q9H2H0 198 aa10.72□□□□□ -0.69
LDLR-207ENST00000558013 TNCP24821 2201 aa10.72□□□□□ -0.69
LDLR-207ENST00000558013 RELNP78509 3460 aa10.72□□□□□ -0.69
LDLR-207ENST00000558013 ZNF292O60281 2723 aa10.72□□□□□ -0.69
LDLR-207ENST00000558013 ARFGEF3Q5TH69 2177 aa10.71□□□□□ -0.69
LDLR-207ENST00000558013 C15orf62A8K5M9 175 aa10.71□□□□□ -0.69
LDLR-207ENST00000558013 EDDM3BP56851 147 aa10.71□□□□□ -0.69
LDLR-207ENST00000558013 CATR1Q13166 79 aa10.71□□□□□ -0.69
LDLR-207ENST00000558013 P2RX4Q99571 388 aa10.71□□□□□ -0.69
LDLR-207ENST00000558013 PATZ1Q9HBE1 687 aaKnown RBP10.71□□□□□ -0.69
LDLR-207ENST00000558013 LAMP3Q9UQV4 416 aa10.71□□□□□ -0.69
LDLR-207ENST00000558013 PCNX1Q96RV3 2341 aa10.71□□□□□ -0.69
LDLR-207ENST00000558013 C15orf65H3BRN8 121 aa10.71□□□□□ -0.69
LDLR-207ENST00000558013 HOXC12P31275 282 aa10.71□□□□□ -0.69
LDLR-207ENST00000558013 GUSBP1Q15486 140 aa10.71□□□□□ -0.69
LDLR-207ENST00000558013 BSXQ3C1V8 233 aa10.71□□□□□ -0.69
LDLR-207ENST00000558013 RHOVQ96L33 236 aa10.71□□□□□ -0.69
LDLR-207ENST00000558013 PCGF1Q9BSM1 259 aa10.71□□□□□ -0.69
LDLR-207ENST00000558013 NAT8Q9UHE5 227 aa10.71□□□□□ -0.69
LDLR-207ENST00000558013 IGKV1D-17A0A075B6S4 117 aa10.71□□□□□ -0.7
LDLR-207ENST00000558013 IGHV1-18A0A0C4DH31 117 aa10.71□□□□□ -0.7
LDLR-207ENST00000558013 SMCO3A2RU48 225 aa10.71□□□□□ -0.7
LDLR-207ENST00000558013 J3QW42 95 aa10.71□□□□□ -0.7
LDLR-207ENST00000558013 RRHO14718 337 aa10.71□□□□□ -0.7
LDLR-207ENST00000558013 KBTBD11O94819 623 aa10.71□□□□□ -0.7
LDLR-207ENST00000558013 PFN1P07737 140 aaKnown RBP10.71□□□□□ -0.7
LDLR-207ENST00000558013 PRDX2P32119 198 aa10.71□□□□□ -0.7
LDLR-207ENST00000558013 PSMB3P49720 205 aa10.71□□□□□ -0.7
LDLR-207ENST00000558013 TRIP6Q15654 476 aaKnown RBP10.71□□□□□ -0.7
LDLR-207ENST00000558013 R3HDM4Q96D70 268 aa10.71□□□□□ -0.7
LDLR-207ENST00000558013 SDSLQ96GA7 329 aa10.71□□□□□ -0.7
LDLR-207ENST00000558013 IGHV2OR16-5A0A0B4J2B6 119 aa10.7□□□□□ -0.7
LDLR-207ENST00000558013 PIGBOS1A0A0B4J2F0 54 aa10.7□□□□□ -0.7
LDLR-207ENST00000558013 CTXND1A0A1B0GTU2 59 aa10.7□□□□□ -0.7
LDLR-207ENST00000558013 SPAARA0A1B0GVQ0 90 aa10.7□□□□□ -0.7
LDLR-207ENST00000558013 A0A1W2PPQ1 181 aa10.7□□□□□ -0.7
LDLR-207ENST00000558013 GAMTQ14353 236 aa10.7□□□□□ -0.7
LDLR-207ENST00000558013 DUX4L9Q6RFH8 374 aaPredicted RBP10.7□□□□□ -0.7
LDLR-207ENST00000558013 VHLLQ6RSH7 139 aa10.7□□□□□ -0.7
LDLR-207ENST00000558013 CYP2G1PQ6ZSU1 146 aa10.7□□□□□ -0.7
LDLR-207ENST00000558013 CENPVQ7Z7K6 275 aaPredicted RBP10.7□□□□□ -0.7
LDLR-207ENST00000558013 ABHD12Q8N2K0 398 aa10.7□□□□□ -0.7
LDLR-207ENST00000558013 PRDM13Q9H4Q3 707 aa10.7□□□□□ -0.7
LDLR-207ENST00000558013 TMEM242Q9NWH2 141 aa10.7□□□□□ -0.7
LDLR-207ENST00000558013 GNG12Q9UBI6 72 aa10.7□□□□□ -0.7
LDLR-207ENST00000558013 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.7□□□□□ -0.7
LDLR-207ENST00000558013 SLC31A2O15432 143 aa10.7□□□□□ -0.7
LDLR-207ENST00000558013 IFNA1P01562 189 aa10.7□□□□□ -0.7
LDLR-207ENST00000558013 P2RY6Q15077 328 aa10.7□□□□□ -0.7
LDLR-207ENST00000558013 UNQ6494/PRO21346Q6UXR6 183 aa10.7□□□□□ -0.7
LDLR-207ENST00000558013 RPRMLQ8N4K4 120 aa10.7□□□□□ -0.7
LDLR-207ENST00000558013 PTPRBP23467 1997 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 TRBV24-1A0A075B6N3 115 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 CHRNA7P36544 502 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 ATP5G3P48201 142 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 OR10A7Q8NGE5 316 aa10.69□□□□□ -0.7
LDLR-207ENST00000558013 PARD6GQ9BYG4 376 aaPredicted RBP10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms