RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 HLA-DRB3P79483 266 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 ZNF90Q03938 601 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 GLO1Q04760 184 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 KRTAP6-3Q3LI67 103 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 FAM78BQ5VT40 261 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 FAM151BQ6UXP7 276 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 RASSF6Q6ZTQ3 369 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 Q8N402 240 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 DAND5Q8N907 189 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 OR8B12Q8NGG6 310 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 JOSD2Q8TAC2 188 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 RPS4Y2Q8TD47 263 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 SLC35G5Q96KT7 338 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 GNB1LQ9BYB4 327 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 MS4A6AQ9H2W1 248 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 C11orf1Q9H5F2 150 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 C8orf4Q9NR00 106 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 TP53TG1Q9Y2A0 90 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 PCYT1BQ9Y5K3 369 aaPredicted RBP1.15□□□□□ -2.23
CD44-238ENST00000534296 A0A1W2PP64 1363 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 BRD4O60885 1362 aaPredicted RBP1.15□□□□□ -2.23
CD44-238ENST00000534296 GRIN2BQ13224 1484 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 MYO16Q9Y6X6 1858 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 PIEZO1Q92508 2521 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 OTOGLQ3ZCN5 2332 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 RIMS2Q9UQ26 1411 aa1.15□□□□□ -2.23
CD44-238ENST00000534296 PLXNA3P51805 1871 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 ADAMTS7Q9UKP4 1686 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 HECW2Q9P2P5 1572 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 CACNA1BQ00975 2339 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 TRGV5A0A0B4J1U4 118 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 A0A1B0GW54 56 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 A0A1W2PQD3 144 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 ZNF860A6NHJ4 632 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 PCNX2A6NKB5 2137 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 ITGB1BP1O14713 200 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 SLC16A4O15374 487 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 BIRC5O15392 142 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 S1PR2O95136 353 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 DEXIO95424 95 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 NPYP01303 97 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 ATP5G1P05496 136 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 KRT7P08729 469 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 MAGEA2P43356 314 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 XCL1P47992 114 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 RPL14P50914 215 aaKnown RBP1.14□□□□□ -2.23
CD44-238ENST00000534296 BLVRAP53004 296 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 EMP2P54851 167 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 CLDN12P56749 244 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 TBPL1P62380 186 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 FOXF1Q12946 379 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 COTL1Q14019 142 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 C4orf26Q17RF5 130 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 CHCHD2P9Q5T1J5 151 aaPredicted RBP1.14□□□□□ -2.23
CD44-238ENST00000534296 C9orf64Q5T6V5 341 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 ZNF705AQ6ZN79 300 aaPredicted RBP1.14□□□□□ -2.23
CD44-238ENST00000534296 C2orf91Q6ZV80 131 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 TBC1D19Q8N5T2 526 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 CNEP1R1Q8N9A8 125 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 PIGXQ8TBF5 258 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 SLC37A2Q8TED4 501 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 ASB13Q8WXK3 278 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 SLC7A6Q92536 515 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 UPK3BQ9BT76 320 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 DOHHQ9BU89 302 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 DERL2Q9GZP9 239 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 PLEKHJ1Q9NW61 149 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 POLR1DQ9Y2S0 133 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 NOSIPQ9Y314 301 aaKnown RBP1.14□□□□□ -2.23
CD44-238ENST00000534296 POLR3HQ9Y535 204 aaPredicted RBP1.14□□□□□ -2.23
CD44-238ENST00000534296 ATP6V1DQ9Y5K8 247 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 BDP1A6H8Y1 2624 aa1.14□□□□□ -2.23
CD44-238ENST00000534296 THSD7AQ9UPZ6 1657 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 NUMA1Q14980 2115 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 ABCA12Q86UK0 2595 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 IGLV3-9A0A075B6K5 115 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 MUC21A0A0G2JKD1 596 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 MUC21A0A140T8X8 626 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 TINCRA0A1B0GVN0 87 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 IGKV2-29A2NJV5 120 aaPredicted RBP1.13□□□□□ -2.23
CD44-238ENST00000534296 SMIM23A6NLE4 172 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 OR5K4A6NMS3 321 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 LRRN3E7EW58 273 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 M0R381 172 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 TYMSP04818 313 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 BPGMP07738 259 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 IL3P08700 152 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 UCHL3P15374 230 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 MYL12AP19105 171 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 CXCL3P19876 107 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 CD24P25063 80 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 CRYBB3P26998 211 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 PEBP1P30086 187 aaKnown RBP1.13□□□□□ -2.23
CD44-238ENST00000534296 LINC00313P59037 77 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 DEFB103AP81534 67 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 MGAT3Q09327 533 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 FABP9Q0Z7S8 132 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 PPP1R1AQ13522 171 aa1.13□□□□□ -2.23
CD44-238ENST00000534296 JOSD1Q15040 202 aaPredicted RBP1.13□□□□□ -2.23
CD44-238ENST00000534296 LGALS9CQ6DKI2 356 aa1.13□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms