RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 LYL1P12980 280 aa11.31□□□□□ -0.6
VPS28-215ENST00000531924 HIST1H1DP16402 221 aaKnown RBP11.31□□□□□ -0.6
VPS28-215ENST00000531924 RAB6AP20340 208 aa11.31□□□□□ -0.6
VPS28-215ENST00000531924 HSPA13P48723 471 aa11.31□□□□□ -0.6
VPS28-215ENST00000531924 PLA2G7Q13093 441 aa11.31□□□□□ -0.6
VPS28-215ENST00000531924 ARL6IP1Q15041 203 aa11.31□□□□□ -0.6
VPS28-215ENST00000531924 USMG5Q96IX5 58 aa11.31□□□□□ -0.6
VPS28-215ENST00000531924 CNBD2Q96M20 576 aa11.31□□□□□ -0.6
VPS28-215ENST00000531924 DCUN1D5Q9BTE7 237 aa11.31□□□□□ -0.6
VPS28-215ENST00000531924 CABLES2Q9BTV7 478 aa11.31□□□□□ -0.6
VPS28-215ENST00000531924 PEF1Q9UBV8 284 aaKnown RBP11.31□□□□□ -0.6
VPS28-215ENST00000531924 ZNF230Q9UIE0 474 aaPredicted RBP11.31□□□□□ -0.6
VPS28-215ENST00000531924 KCNK7Q9Y2U2 307 aa11.31□□□□□ -0.6
VPS28-215ENST00000531924 SORL1Q92673 2214 aa11.31□□□□□ -0.6
VPS28-215ENST00000531924 A0A0B4J203 849 aa11.3□□□□□ -0.6
VPS28-215ENST00000531924 H0Y980 276 aa11.3□□□□□ -0.6
VPS28-215ENST00000531924 IGLV1-51P01701 117 aa11.3□□□□□ -0.6
VPS28-215ENST00000531924 IGLV2-23P01705 113 aa11.3□□□□□ -0.6
VPS28-215ENST00000531924 APELAP0DMC3 54 aa11.3□□□□□ -0.6
VPS28-215ENST00000531924 RAB3BP20337 219 aa11.3□□□□□ -0.6
VPS28-215ENST00000531924 SYNJ2BPP57105 145 aa11.3□□□□□ -0.6
VPS28-215ENST00000531924 OR10A3P58181 314 aa11.3□□□□□ -0.6
VPS28-215ENST00000531924 TBCEQ15813 527 aaPredicted RBP11.3□□□□□ -0.6
VPS28-215ENST00000531924 TMEM177Q53S58 311 aa11.3□□□□□ -0.6
VPS28-215ENST00000531924 OR9G4Q8NGQ1 327 aa11.3□□□□□ -0.6
VPS28-215ENST00000531924 ACOT12Q8WYK0 555 aa11.3□□□□□ -0.6
VPS28-215ENST00000531924 TINAGL1Q9GZM7 467 aaPredicted RBP11.3□□□□□ -0.6
VPS28-215ENST00000531924 ATG5Q9H1Y0 275 aa11.3□□□□□ -0.6
VPS28-215ENST00000531924 MSGN1A6NI15 193 aa11.29□□□□□ -0.6
VPS28-215ENST00000531924 MFNGO00587 321 aa11.29□□□□□ -0.6
VPS28-215ENST00000531924 CREBL2O60519 120 aaPredicted RBP11.29□□□□□ -0.6
VPS28-215ENST00000531924 CRYZL1O95825 349 aa11.29□□□□□ -0.6
VPS28-215ENST00000531924 CRYGBP07316 175 aa11.29□□□□□ -0.6
VPS28-215ENST00000531924 IGHV4-30-4P0DP06 118 aa11.29□□□□□ -0.6
VPS28-215ENST00000531924 KLF5Q13887 457 aaPredicted RBP11.29□□□□□ -0.6
VPS28-215ENST00000531924 TNXAQ16473 311 aa11.29□□□□□ -0.6
VPS28-215ENST00000531924 RPEL1Q2QD12 228 aa11.29□□□□□ -0.6
VPS28-215ENST00000531924 TEX45Q8NA69 505 aa11.29□□□□□ -0.6
VPS28-215ENST00000531924 J3QRK9 145 aa11.28□□□□□ -0.6
VPS28-215ENST00000531924 RAB27BO00194 218 aa11.28□□□□□ -0.6
VPS28-215ENST00000531924 BRI3O95415 125 aa11.28□□□□□ -0.6
VPS28-215ENST00000531924 UBE2KP61086 200 aa11.28□□□□□ -0.6
VPS28-215ENST00000531924 SSX1Q16384 188 aa11.28□□□□□ -0.6
VPS28-215ENST00000531924 PRSS8Q16651 343 aa11.28□□□□□ -0.6
VPS28-215ENST00000531924 CASC10Q5T4H9 136 aa11.28□□□□□ -0.6
VPS28-215ENST00000531924 IZUMO2Q6UXV1 221 aa11.28□□□□□ -0.6
VPS28-215ENST00000531924 GTSCR1Q86UQ5 136 aa11.28□□□□□ -0.6
VPS28-215ENST00000531924 SNAPC3Q92966 411 aa11.28□□□□□ -0.6
VPS28-215ENST00000531924 ST6GALNAC5Q9BVH7 336 aa11.28□□□□□ -0.6
VPS28-215ENST00000531924 TUBA4BQ9H853 241 aa11.28□□□□□ -0.6
VPS28-215ENST00000531924 NDUFB11Q9NX14 153 aa11.28□□□□□ -0.6
VPS28-215ENST00000531924 HUWE1Q7Z6Z7 4374 aaKnown RBP11.27□□□□□ -0.6
VPS28-215ENST00000531924 TRDV1A0A1B0GX56 115 aa11.27□□□□□ -0.61
VPS28-215ENST00000531924 SRRM4A7MD48 611 aaKnown RBP11.27□□□□□ -0.61
VPS28-215ENST00000531924 TUSC2O75896 110 aa11.27□□□□□ -0.61
VPS28-215ENST00000531924 CTXN2P0C2S0 81 aa11.27□□□□□ -0.61
VPS28-215ENST00000531924 OR9G9P0C7N8 305 aa11.27□□□□□ -0.61
VPS28-215ENST00000531924 DUTP33316 252 aaKnown RBP11.27□□□□□ -0.61
VPS28-215ENST00000531924 SSBP2P81877 361 aaPredicted RBP11.27□□□□□ -0.61
VPS28-215ENST00000531924 DEFA5Q01523 94 aa11.27□□□□□ -0.61
VPS28-215ENST00000531924 CDNFQ49AH0 187 aa11.27□□□□□ -0.61
VPS28-215ENST00000531924 C22orf42Q6IC83 251 aa11.27□□□□□ -0.61
VPS28-215ENST00000531924 LCN12Q6JVE5 192 aa11.27□□□□□ -0.61
VPS28-215ENST00000531924 ZNF343Q6P1L6 599 aa11.27□□□□□ -0.61
VPS28-215ENST00000531924 IDO2Q6ZQW0 420 aa11.27□□□□□ -0.61
VPS28-215ENST00000531924 H1FOOQ8IZA3 346 aaPredicted RBP11.27□□□□□ -0.61
VPS28-215ENST00000531924 OSR1Q8TAX0 266 aaPredicted RBP11.27□□□□□ -0.61
VPS28-215ENST00000531924 SRSF12Q8WXF0 261 aaKnown RBP11.27□□□□□ -0.61
VPS28-215ENST00000531924 SPIN2AQ99865 258 aa11.27□□□□□ -0.61
VPS28-215ENST00000531924 SPIN2BQ9BPZ2 258 aa11.27□□□□□ -0.61
VPS28-215ENST00000531924 PEMTQ9UBM1 199 aa11.27□□□□□ -0.61
VPS28-215ENST00000531924 MRPS7Q9Y2R9 242 aaKnown RBP11.27□□□□□ -0.61
VPS28-215ENST00000531924 PRELID3BQ9Y3B1 194 aa11.27□□□□□ -0.61
VPS28-215ENST00000531924 FCGR3BO75015 233 aa11.26□□□□□ -0.61
VPS28-215ENST00000531924 CD36P16671 472 aa11.26□□□□□ -0.61
VPS28-215ENST00000531924 DTYMKP23919 212 aa11.26□□□□□ -0.61
VPS28-215ENST00000531924 RHOGP84095 191 aa11.26□□□□□ -0.61
VPS28-215ENST00000531924 ATP5G2Q06055 141 aa11.26□□□□□ -0.61
VPS28-215ENST00000531924 DYRK1AQ13627 763 aa11.26□□□□□ -0.61
VPS28-215ENST00000531924 Q6ZS49 121 aa11.26□□□□□ -0.61
VPS28-215ENST00000531924 Q8N1Y9 231 aa11.26□□□□□ -0.61
VPS28-215ENST00000531924 ISOC1Q96CN7 298 aa11.26□□□□□ -0.61
VPS28-215ENST00000531924 C5orf30Q96GV9 206 aa11.26□□□□□ -0.61
VPS28-215ENST00000531924 SMIM30A4D0T7 59 aa11.25□□□□□ -0.61
VPS28-215ENST00000531924 DPPA5A6NC42 116 aa11.25□□□□□ -0.61
VPS28-215ENST00000531924 FAM223BA6NKX1 122 aa11.25□□□□□ -0.61
VPS28-215ENST00000531924 SLC22A5O76082 557 aa11.25□□□□□ -0.61
VPS28-215ENST00000531924 OR2A4O95047 310 aa11.25□□□□□ -0.61
VPS28-215ENST00000531924 TRBV12-3P01733 135 aa11.25□□□□□ -0.61
VPS28-215ENST00000531924 GALP22466 123 aa11.25□□□□□ -0.61
VPS28-215ENST00000531924 KCTD9Q7L273 389 aa11.25□□□□□ -0.61
VPS28-215ENST00000531924 FAM223AQ8IWN6 122 aa11.25□□□□□ -0.61
VPS28-215ENST00000531924 MMD2Q8IY49 270 aa11.25□□□□□ -0.61
VPS28-215ENST00000531924 Q8N402 240 aa11.25□□□□□ -0.61
VPS28-215ENST00000531924 ZNF645Q8N7E2 425 aa11.25□□□□□ -0.61
VPS28-215ENST00000531924 ADAD2Q8NCV1 583 aaKnown RBP11.25□□□□□ -0.61
VPS28-215ENST00000531924 DDB2Q92466 427 aa11.25□□□□□ -0.61
VPS28-215ENST00000531924 CITED4Q96RK1 184 aa11.25□□□□□ -0.61
VPS28-215ENST00000531924 TM2D3Q9BRN9 247 aa11.25□□□□□ -0.61
VPS28-215ENST00000531924 OR2W1Q9Y3N9 320 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms