RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 CRYZL1O95825 349 aa10.82□□□□□ -0.68
SYNE1-226ENST00000488376 CTXN2P0C2S0 81 aa10.82□□□□□ -0.68
SYNE1-226ENST00000488376 FCGR2CP31995 323 aa10.82□□□□□ -0.68
SYNE1-226ENST00000488376 CHRNA7P36544 502 aa10.82□□□□□ -0.68
SYNE1-226ENST00000488376 CDX1P47902 265 aaPredicted RBP10.82□□□□□ -0.68
SYNE1-226ENST00000488376 ALDH3B2P48448 385 aa10.82□□□□□ -0.68
SYNE1-226ENST00000488376 BRWD1-AS2P59051 145 aa10.82□□□□□ -0.68
SYNE1-226ENST00000488376 GNB1P62873 340 aa10.82□□□□□ -0.68
SYNE1-226ENST00000488376 TMEM69Q5SWH9 247 aa10.82□□□□□ -0.68
SYNE1-226ENST00000488376 IDO2Q6ZQW0 420 aa10.82□□□□□ -0.68
SYNE1-226ENST00000488376 PPP1R27Q86WC6 154 aa10.82□□□□□ -0.68
SYNE1-226ENST00000488376 ZNF491Q8N8L2 437 aa10.82□□□□□ -0.68
SYNE1-226ENST00000488376 LFNGQ8NES3 379 aa10.82□□□□□ -0.68
SYNE1-226ENST00000488376 GRPEL2Q8TAA5 225 aa10.82□□□□□ -0.68
SYNE1-226ENST00000488376 MRPS26Q9BYN8 205 aaKnown RBP10.82□□□□□ -0.68
SYNE1-226ENST00000488376 ALX4Q9H161 411 aaPredicted RBP10.82□□□□□ -0.68
SYNE1-226ENST00000488376 SHOXO15266 292 aa10.81□□□□□ -0.68
SYNE1-226ENST00000488376 HPGDSO60760 199 aa10.81□□□□□ -0.68
SYNE1-226ENST00000488376 FCGR3BO75015 233 aa10.81□□□□□ -0.68
SYNE1-226ENST00000488376 OR5H8P0DN80 308 aa10.81□□□□□ -0.68
SYNE1-226ENST00000488376 ELK1P19419 428 aa10.81□□□□□ -0.68
SYNE1-226ENST00000488376 HOXD3P31249 432 aaPredicted RBP10.81□□□□□ -0.68
SYNE1-226ENST00000488376 MYCNOSP40205 109 aa10.81□□□□□ -0.68
SYNE1-226ENST00000488376 RAB9AP51151 201 aa10.81□□□□□ -0.68
SYNE1-226ENST00000488376 KRTAP10-11P60412 298 aa10.81□□□□□ -0.68
SYNE1-226ENST00000488376 TAGLNQ01995 201 aaKnown RBP10.81□□□□□ -0.68
SYNE1-226ENST00000488376 FXYD3Q14802 87 aa10.81□□□□□ -0.68
SYNE1-226ENST00000488376 RTL8BQ17RB0 113 aa10.81□□□□□ -0.68
SYNE1-226ENST00000488376 ASPHD1Q5U4P2 390 aa10.81□□□□□ -0.68
SYNE1-226ENST00000488376 UNQ5815/PRO19632Q6UWF5 114 aa10.81□□□□□ -0.68
SYNE1-226ENST00000488376 ZNF562Q6V9R5 426 aa10.81□□□□□ -0.68
SYNE1-226ENST00000488376 C4orf3Q8WVX3 66 aa10.81□□□□□ -0.68
SYNE1-226ENST00000488376 ARPC1AQ92747 370 aa10.81□□□□□ -0.68
SYNE1-226ENST00000488376 CCL28Q9NRJ3 127 aa10.81□□□□□ -0.68
SYNE1-226ENST00000488376 TAS2R8Q9NYW2 309 aa10.81□□□□□ -0.68
SYNE1-226ENST00000488376 ANAPC10Q9UM13 185 aa10.81□□□□□ -0.68
SYNE1-226ENST00000488376 FOXA2Q9Y261 457 aaPredicted RBP10.81□□□□□ -0.68
SYNE1-226ENST00000488376 I3L521 148 aa10.8□□□□□ -0.68
SYNE1-226ENST00000488376 TNFSF12O43508 249 aa10.8□□□□□ -0.68
SYNE1-226ENST00000488376 PPYP01298 95 aa10.8□□□□□ -0.68
SYNE1-226ENST00000488376 RAB25P57735 213 aa10.8□□□□□ -0.68
SYNE1-226ENST00000488376 TMEM65Q6PI78 240 aa10.8□□□□□ -0.68
SYNE1-226ENST00000488376 KCTD9Q7L273 389 aa10.8□□□□□ -0.68
SYNE1-226ENST00000488376 VKORC1L1Q8N0U8 176 aa10.8□□□□□ -0.68
SYNE1-226ENST00000488376 OR5AP2Q8NGF4 316 aa10.8□□□□□ -0.68
SYNE1-226ENST00000488376 SECTM1Q8WVN6 248 aa10.8□□□□□ -0.68
SYNE1-226ENST00000488376 KCTD12Q96CX2 325 aaKnown RBP10.8□□□□□ -0.68
SYNE1-226ENST00000488376 RCC1LQ96I51 464 aaKnown RBP10.8□□□□□ -0.68
SYNE1-226ENST00000488376 ADTRPQ96IZ2 230 aa10.8□□□□□ -0.68
SYNE1-226ENST00000488376 MS4A10Q96PG2 267 aa10.8□□□□□ -0.68
SYNE1-226ENST00000488376 NECAP2Q9NVZ3 263 aa10.8□□□□□ -0.68
SYNE1-226ENST00000488376 AURKAIP1Q9NWT8 199 aaPredicted RBP10.8□□□□□ -0.68
SYNE1-226ENST00000488376 PMP2P02689 132 aa10.79□□□□□ -0.68
SYNE1-226ENST00000488376 SAA1P0DJI8 122 aaPredicted RBP10.79□□□□□ -0.68
SYNE1-226ENST00000488376 APELAP0DMC3 54 aa10.79□□□□□ -0.68
SYNE1-226ENST00000488376 SLC6A1P30531 599 aa10.79□□□□□ -0.68
SYNE1-226ENST00000488376 LGALS7P47929 136 aa10.79□□□□□ -0.68
SYNE1-226ENST00000488376 RFX2P48378 723 aa10.79□□□□□ -0.68
SYNE1-226ENST00000488376 FXYD4P59646 89 aa10.79□□□□□ -0.68
SYNE1-226ENST00000488376 DEFA5Q01523 94 aa10.79□□□□□ -0.68
SYNE1-226ENST00000488376 FHL3Q13643 280 aa10.79□□□□□ -0.68
SYNE1-226ENST00000488376 SPCS2Q15005 226 aa10.79□□□□□ -0.68
SYNE1-226ENST00000488376 CDK10Q15131 360 aa10.79□□□□□ -0.68
SYNE1-226ENST00000488376 ACTBL2Q562R1 376 aa10.79□□□□□ -0.68
SYNE1-226ENST00000488376 OVCH2Q7RTZ1 564 aa10.79□□□□□ -0.68
SYNE1-226ENST00000488376 SNX29P2Q8IUI4 249 aa10.79□□□□□ -0.68
SYNE1-226ENST00000488376 TCTEX1D2Q8WW35 142 aa10.79□□□□□ -0.68
SYNE1-226ENST00000488376 IFT46Q9NQC8 304 aa10.79□□□□□ -0.68
SYNE1-226ENST00000488376 MRPS7Q9Y2R9 242 aaKnown RBP10.79□□□□□ -0.68
SYNE1-226ENST00000488376 PRKDCP78527 4128 aaKnown RBP10.79□□□□□ -0.68
SYNE1-226ENST00000488376 NOTCH3Q9UM47 2321 aa10.79□□□□□ -0.68
SYNE1-226ENST00000488376 RAMP3O60896 148 aa10.78□□□□□ -0.68
SYNE1-226ENST00000488376 CNIH1O95406 144 aa10.78□□□□□ -0.68
SYNE1-226ENST00000488376 APOA1P02647 267 aa10.78□□□□□ -0.68
SYNE1-226ENST00000488376 RRASP10301 218 aa10.78□□□□□ -0.68
SYNE1-226ENST00000488376 CBX5P45973 191 aa10.78□□□□□ -0.68
SYNE1-226ENST00000488376 RORCP51449 518 aa10.78□□□□□ -0.68
SYNE1-226ENST00000488376 UBE2KP61086 200 aa10.78□□□□□ -0.68
SYNE1-226ENST00000488376 CBX3Q13185 183 aa10.78□□□□□ -0.68
SYNE1-226ENST00000488376 PRSS8Q16651 343 aa10.78□□□□□ -0.68
SYNE1-226ENST00000488376 AKIRIN2Q53H80 203 aa10.78□□□□□ -0.68
SYNE1-226ENST00000488376 C10orf55Q5SWW7 151 aa10.78□□□□□ -0.68
SYNE1-226ENST00000488376 ZNF818PQ6ZRF7 136 aa10.78□□□□□ -0.68
SYNE1-226ENST00000488376 GPR141Q7Z602 305 aa10.78□□□□□ -0.68
SYNE1-226ENST00000488376 TMEM17Q86X19 198 aa10.78□□□□□ -0.68
SYNE1-226ENST00000488376 LYSMD2Q8IV50 215 aa10.78□□□□□ -0.68
SYNE1-226ENST00000488376 MFSD4AQ8N468 514 aa10.78□□□□□ -0.68
SYNE1-226ENST00000488376 OR5T1Q8NG75 326 aa10.78□□□□□ -0.68
SYNE1-226ENST00000488376 OR11H1Q8NG94 326 aa10.78□□□□□ -0.68
SYNE1-226ENST00000488376 UBE2E2Q96LR5 201 aa10.78□□□□□ -0.68
SYNE1-226ENST00000488376 SLC5A7Q9GZV3 580 aa10.78□□□□□ -0.68
SYNE1-226ENST00000488376 EHFQ9NZC4 300 aa10.78□□□□□ -0.68
SYNE1-226ENST00000488376 VSIG4Q9Y279 399 aa10.78□□□□□ -0.68
SYNE1-226ENST00000488376 RBMXL2O75526 392 aaKnown RBP10.77□□□□□ -0.69
SYNE1-226ENST00000488376 IGHV3-11P01762 117 aa10.77□□□□□ -0.69
SYNE1-226ENST00000488376 NAT1P18440 290 aa10.77□□□□□ -0.69
SYNE1-226ENST00000488376 HLA-DMAP28067 261 aa10.77□□□□□ -0.69
SYNE1-226ENST00000488376 PRSS3P35030 304 aa10.77□□□□□ -0.69
SYNE1-226ENST00000488376 VMA21Q3ZAQ7 101 aa10.77□□□□□ -0.69
SYNE1-226ENST00000488376 RNASE12Q5GAN4 147 aaKnown RBP10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms