RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 OPN1MW3P0DN78 364 aa14.94□□□□□ -0.02
VIM-206ENST00000487938 WT1P19544 449 aaPredicted RBP14.94□□□□□ -0.02
VIM-206ENST00000487938 PMS2P11Q13670 270 aa14.94□□□□□ -0.02
VIM-206ENST00000487938 R3HDM4Q96D70 268 aa14.94□□□□□ -0.02
VIM-206ENST00000487938 SEC14L6B5MCN3 397 aa14.94□□□□□ -0.02
VIM-206ENST00000487938 PAGE4O60829 102 aa14.94□□□□□ -0.02
VIM-206ENST00000487938 FCGR3BO75015 233 aa14.94□□□□□ -0.02
VIM-206ENST00000487938 KBTBD11O94819 623 aa14.94□□□□□ -0.02
VIM-206ENST00000487938 RPL23P62829 140 aaKnown RBP14.94□□□□□ -0.02
VIM-206ENST00000487938 BSXQ3C1V8 233 aa14.94□□□□□ -0.02
VIM-206ENST00000487938 LRP11Q86VZ4 500 aa14.94□□□□□ -0.02
VIM-206ENST00000487938 HIST3H2BBQ8N257 126 aa14.94□□□□□ -0.02
VIM-206ENST00000487938 CIB3Q96Q77 187 aaPredicted RBP14.94□□□□□ -0.02
VIM-206ENST00000487938 HSD17B10Q99714 261 aaKnown RBP14.94□□□□□ -0.02
VIM-206ENST00000487938 CTDSP1Q9GZU7 261 aa14.94□□□□□ -0.02
VIM-206ENST00000487938 PARLQ9H300 379 aa14.94□□□□□ -0.02
VIM-206ENST00000487938 DUSP13Q9UII6 198 aa14.94□□□□□ -0.02
VIM-206ENST00000487938 WASF3Q9UPY6 502 aa14.94□□□□□ -0.02
VIM-206ENST00000487938 IGHV3OR15-7A0A075B7D8 119 aa14.93□□□□□ -0.02
VIM-206ENST00000487938 MBP02144 154 aa14.93□□□□□ -0.02
VIM-206ENST00000487938 GPR12P47775 334 aa14.93□□□□□ -0.02
VIM-206ENST00000487938 RTP5Q14D33 572 aa14.93□□□□□ -0.02
VIM-206ENST00000487938 CYP2G1PQ6ZSU1 146 aa14.93□□□□□ -0.02
VIM-206ENST00000487938 PIP4P1Q86T03 277 aa14.93□□□□□ -0.02
VIM-206ENST00000487938 VKORC1L1Q8N0U8 176 aa14.93□□□□□ -0.02
VIM-206ENST00000487938 TRBV24-1A0A075B6N3 115 aa14.92□□□□□ -0.02
VIM-206ENST00000487938 C15orf62A8K5M9 175 aa14.92□□□□□ -0.02
VIM-206ENST00000487938 AQP7O14520 342 aa14.92□□□□□ -0.02
VIM-206ENST00000487938 BMP5P22003 454 aa14.92□□□□□ -0.02
VIM-206ENST00000487938 TUBG1P23258 451 aa14.92□□□□□ -0.02
VIM-206ENST00000487938 GCSAMLQ5JQS6 135 aa14.92□□□□□ -0.02
VIM-206ENST00000487938 GNG12Q9UBI6 72 aa14.92□□□□□ -0.02
VIM-206ENST00000487938 ZNF891A8MT65 544 aaPredicted RBP14.92□□□□□ -0.02
VIM-206ENST00000487938 PRR33A8MZF0 331 aa14.92□□□□□ -0.02
VIM-206ENST00000487938 PHOX2AO14813 284 aa14.92□□□□□ -0.02
VIM-206ENST00000487938 CD82P27701 267 aa14.92□□□□□ -0.02
VIM-206ENST00000487938 DUTP33316 252 aaKnown RBP14.92□□□□□ -0.02
VIM-206ENST00000487938 GNB2P62879 340 aa14.92□□□□□ -0.02
VIM-206ENST00000487938 MSMPQ1L6U9 139 aa14.92□□□□□ -0.02
VIM-206ENST00000487938 SPRNQ5BIV9 151 aa14.92□□□□□ -0.02
VIM-206ENST00000487938 TCTEX1D1Q8N7M0 179 aa14.92□□□□□ -0.02
VIM-206ENST00000487938 ZNF383Q8NA42 475 aa14.92□□□□□ -0.02
VIM-206ENST00000487938 C1orf162Q8NEQ5 155 aaPredicted RBP14.92□□□□□ -0.02
VIM-206ENST00000487938 PLSCR4Q9NRQ2 329 aa14.92□□□□□ -0.02
VIM-206ENST00000487938 LAMP3Q9UQV4 416 aa14.92□□□□□ -0.02
VIM-206ENST00000487938 INTS1Q8N201 2190 aaKnown RBP14.92□□□□□ -0.02
VIM-206ENST00000487938 IGKV1D-17A0A075B6S4 117 aa14.91□□□□□ -0.02
VIM-206ENST00000487938 GALR2O43603 387 aaPredicted RBP14.91□□□□□ -0.02
VIM-206ENST00000487938 FABP4P15090 132 aa14.91□□□□□ -0.02
VIM-206ENST00000487938 VWC2Q2TAL6 325 aa14.91□□□□□ -0.02
VIM-206ENST00000487938 FAM209BQ5JX69 171 aa14.91□□□□□ -0.02
VIM-206ENST00000487938 OR5T1Q8NG75 326 aa14.91□□□□□ -0.02
VIM-206ENST00000487938 SARAFQ96BY9 339 aa14.91□□□□□ -0.02
VIM-206ENST00000487938 SNX22Q96L94 193 aa14.91□□□□□ -0.02
VIM-206ENST00000487938 OR6C3Q9NZP0 311 aa14.91□□□□□ -0.02
VIM-206ENST00000487938 SVILO95425 2214 aa14.91□□□□□ -0.02
VIM-206ENST00000487938 IGLV1-44P01699 117 aa14.91□□□□□ -0.02
VIM-206ENST00000487938 PFN1P07737 140 aaKnown RBP14.91□□□□□ -0.02
VIM-206ENST00000487938 ADH4P08319 380 aa14.91□□□□□ -0.02
VIM-206ENST00000487938 HTD2P86397 168 aa14.91□□□□□ -0.02
VIM-206ENST00000487938 MORN2Q502X0 79 aa14.91□□□□□ -0.02
VIM-206ENST00000487938 RPL39P5Q59GN2 51 aa14.91□□□□□ -0.02
VIM-206ENST00000487938 MBNL2Q5VZF2 373 aaKnown RBP14.91□□□□□ -0.02
VIM-206ENST00000487938 DEFB124Q8NES8 71 aa14.91□□□□□ -0.02
VIM-206ENST00000487938 OR10A7Q8NGE5 316 aa14.91□□□□□ -0.02
VIM-206ENST00000487938 ZNF71Q9NQZ8 489 aaPredicted RBP14.91□□□□□ -0.02
VIM-206ENST00000487938 GAB2Q9UQC2 676 aa14.91□□□□□ -0.02
VIM-206ENST00000487938 PTPRBP23467 1997 aa14.91□□□□□ -0.02
VIM-206ENST00000487938 TRAV38-1A0A0B4J264 116 aa14.9□□□□□ -0.02
VIM-206ENST00000487938 SMCO3A2RU48 225 aa14.9□□□□□ -0.02
VIM-206ENST00000487938 TMEM250H0YL14 139 aa14.9□□□□□ -0.02
VIM-206ENST00000487938 GZMHP20718 246 aa14.9□□□□□ -0.02
VIM-206ENST00000487938 ZNRF1Q8ND25 227 aa14.9□□□□□ -0.02
VIM-206ENST00000487938 OR4X1Q8NH49 305 aa14.9□□□□□ -0.02
VIM-206ENST00000487938 STARD4Q96DR4 205 aa14.9□□□□□ -0.02
VIM-206ENST00000487938 ELOVL1Q9BW60 279 aa14.9□□□□□ -0.02
VIM-206ENST00000487938 MANBALQ9NQG1 85 aa14.9□□□□□ -0.02
VIM-206ENST00000487938 C17orf112F2Z3M2 114 aa14.9□□□□□ -0.02
VIM-206ENST00000487938 M0R1X1 148 aa14.9□□□□□ -0.02
VIM-206ENST00000487938 TNFSF13O75888 250 aa14.9□□□□□ -0.02
VIM-206ENST00000487938 CD1BP29016 333 aa14.9□□□□□ -0.02
VIM-206ENST00000487938 ZNF134P52741 427 aa14.9□□□□□ -0.02
VIM-206ENST00000487938 EDDM3BP56851 147 aa14.9□□□□□ -0.02
VIM-206ENST00000487938 UTF1Q5T230 341 aa14.9□□□□□ -0.02
VIM-206ENST00000487938 BHLHA15Q7RTS1 189 aaPredicted RBP14.9□□□□□ -0.02
VIM-206ENST00000487938 Q8N7P7 452 aa14.9□□□□□ -0.02
VIM-206ENST00000487938 DKK4Q9UBT3 224 aa14.9□□□□□ -0.02
VIM-206ENST00000487938 PROCRQ9UNN8 238 aa14.9□□□□□ -0.02
VIM-206ENST00000487938 ELOA3CA0A087WX78 387 aaPredicted RBP14.89□□□□□ -0.03
VIM-206ENST00000487938 TRAV3A0A0B4J244 114 aa14.89□□□□□ -0.03
VIM-206ENST00000487938 TRAV17A0A0B4J275 112 aa14.89□□□□□ -0.03
VIM-206ENST00000487938 SPAARA0A1B0GVQ0 90 aa14.89□□□□□ -0.03
VIM-206ENST00000487938 IFNA10P01566 189 aa14.89□□□□□ -0.03
VIM-206ENST00000487938 CRYAAP02489 173 aa14.89□□□□□ -0.03
VIM-206ENST00000487938 FTH1P19P0C7X4 201 aa14.89□□□□□ -0.03
VIM-206ENST00000487938 GALR1P47211 349 aa14.89□□□□□ -0.03
VIM-206ENST00000487938 CDC34P49427 236 aaPredicted RBP14.89□□□□□ -0.03
VIM-206ENST00000487938 UBE2G2P60604 165 aa14.89□□□□□ -0.03
VIM-206ENST00000487938 PRAMEF5Q5TYX0 476 aa14.89□□□□□ -0.03
VIM-206ENST00000487938 Q8TCH9 128 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms