RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 DCTN2Q13561 401 aaKnown RBP13.69□□□□□ -0.22
COL9A3-212ENST00000481800 VMA21Q3ZAQ7 101 aa13.69□□□□□ -0.22
COL9A3-212ENST00000481800 TMEM177Q53S58 311 aa13.69□□□□□ -0.22
COL9A3-212ENST00000481800 OR5H6Q8NGV6 325 aa13.69□□□□□ -0.22
COL9A3-212ENST00000481800 C5orf30Q96GV9 206 aa13.69□□□□□ -0.22
COL9A3-212ENST00000481800 SLA2Q9H6Q3 261 aa13.69□□□□□ -0.22
COL9A3-212ENST00000481800 ZNF355PQ9NSJ1 428 aa13.69□□□□□ -0.22
COL9A3-212ENST00000481800 OR2W1Q9Y3N9 320 aa13.69□□□□□ -0.22
COL9A3-212ENST00000481800 ARPC1BO15143 372 aaKnown RBP13.68□□□□□ -0.22
COL9A3-212ENST00000481800 SLC22A5O76082 557 aa13.68□□□□□ -0.22
COL9A3-212ENST00000481800 LGALS1P09382 135 aaKnown RBP13.68□□□□□ -0.22
COL9A3-212ENST00000481800 ZNF645Q8N7E2 425 aa13.68□□□□□ -0.22
COL9A3-212ENST00000481800 ALX4Q9H161 411 aaPredicted RBP13.68□□□□□ -0.22
COL9A3-212ENST00000481800 DIABLOQ9NR28 239 aa13.68□□□□□ -0.22
COL9A3-212ENST00000481800 ANXA10Q9UJ72 324 aa13.68□□□□□ -0.22
COL9A3-212ENST00000481800 A0A087WXM4 84 aa13.67□□□□□ -0.22
COL9A3-212ENST00000481800 A0A0A6YYH2 397 aa13.67□□□□□ -0.22
COL9A3-212ENST00000481800 A6NJ64 397 aa13.67□□□□□ -0.22
COL9A3-212ENST00000481800 LINC01619G3V211 115 aa13.67□□□□□ -0.22
COL9A3-212ENST00000481800 SSX5O60225 188 aa13.67□□□□□ -0.22
COL9A3-212ENST00000481800 TMEM127O75204 238 aa13.67□□□□□ -0.22
COL9A3-212ENST00000481800 TNFAIP8O95379 198 aa13.67□□□□□ -0.22
COL9A3-212ENST00000481800 CRYZL1O95825 349 aa13.67□□□□□ -0.22
COL9A3-212ENST00000481800 HLA-DQB1P01920 261 aa13.67□□□□□ -0.22
COL9A3-212ENST00000481800 TRGV3P03979 118 aa13.67□□□□□ -0.22
COL9A3-212ENST00000481800 CRYGBP07316 175 aa13.67□□□□□ -0.22
COL9A3-212ENST00000481800 ECI1P42126 302 aa13.67□□□□□ -0.22
COL9A3-212ENST00000481800 ARPC4P59998 168 aa13.67□□□□□ -0.22
COL9A3-212ENST00000481800 PJVKQ0ZLH3 352 aa13.67□□□□□ -0.22
COL9A3-212ENST00000481800 TSPAN14Q8NG11 270 aa13.67□□□□□ -0.22
COL9A3-212ENST00000481800 OR5T1Q8NG75 326 aa13.67□□□□□ -0.22
COL9A3-212ENST00000481800 SLC25A38Q96DW6 304 aa13.67□□□□□ -0.22
COL9A3-212ENST00000481800 TMEM68Q96MH6 324 aa13.67□□□□□ -0.22
COL9A3-212ENST00000481800 DCUN1D5Q9BTE7 237 aa13.67□□□□□ -0.22
COL9A3-212ENST00000481800 PRELID3BQ9Y3B1 194 aa13.67□□□□□ -0.22
COL9A3-212ENST00000481800 SRRM4A7MD48 611 aaKnown RBP13.66□□□□□ -0.22
COL9A3-212ENST00000481800 LINC00473A8K010 186 aa13.66□□□□□ -0.22
COL9A3-212ENST00000481800 OVOL1O14753 267 aa13.66□□□□□ -0.22
COL9A3-212ENST00000481800 AIREO43918 545 aa13.66□□□□□ -0.22
COL9A3-212ENST00000481800 TUSC2O75896 110 aa13.66□□□□□ -0.22
COL9A3-212ENST00000481800 IGHV3-11P01762 117 aa13.66□□□□□ -0.22
COL9A3-212ENST00000481800 INSL3P51460 131 aa13.66□□□□□ -0.22
COL9A3-212ENST00000481800 UBE2KP61086 200 aa13.66□□□□□ -0.22
COL9A3-212ENST00000481800 ASPHD1Q5U4P2 390 aa13.66□□□□□ -0.22
COL9A3-212ENST00000481800 CROCCP3Q8IVE0 287 aa13.66□□□□□ -0.22
COL9A3-212ENST00000481800 TEX45Q8NA69 505 aa13.66□□□□□ -0.22
COL9A3-212ENST00000481800 POC5Q8NA72 575 aa13.66□□□□□ -0.22
COL9A3-212ENST00000481800 OSR1Q8TAX0 266 aaPredicted RBP13.66□□□□□ -0.22
COL9A3-212ENST00000481800 DDB2Q92466 427 aa13.66□□□□□ -0.22
COL9A3-212ENST00000481800 DCUN1D4Q92564 292 aa13.66□□□□□ -0.22
COL9A3-212ENST00000481800 PHB2Q99623 299 aa13.66□□□□□ -0.22
COL9A3-212ENST00000481800 SCOCQ9UIL1 159 aa13.66□□□□□ -0.22
COL9A3-212ENST00000481800 SPATA2Q9UM82 520 aa13.66□□□□□ -0.22
COL9A3-212ENST00000481800 H3BUA1 57 aa13.65□□□□□ -0.22
COL9A3-212ENST00000481800 FCGR3BO75015 233 aa13.65□□□□□ -0.22
COL9A3-212ENST00000481800 HSPB1P04792 205 aaKnown RBP13.65□□□□□ -0.22
COL9A3-212ENST00000481800 CD69Q07108 199 aa13.65□□□□□ -0.22
COL9A3-212ENST00000481800 KCTD9Q7L273 389 aa13.65□□□□□ -0.22
COL9A3-212ENST00000481800 BEST4Q8NFU0 473 aa13.65□□□□□ -0.22
COL9A3-212ENST00000481800 RHOVQ96L33 236 aa13.65□□□□□ -0.22
COL9A3-212ENST00000481800 MRPS7Q9Y2R9 242 aaKnown RBP13.65□□□□□ -0.22
COL9A3-212ENST00000481800 RBMX2Q9Y388 322 aaKnown RBP13.65□□□□□ -0.22
COL9A3-212ENST00000481800 IGHV4OR15-8A0A075B7B6 117 aa13.64□□□□□ -0.23
COL9A3-212ENST00000481800 A0A087WW49 117 aa13.64□□□□□ -0.23
COL9A3-212ENST00000481800 A0A0G2JLM5 398 aa13.64□□□□□ -0.23
COL9A3-212ENST00000481800 C13orf42A0A1B0GVH6 325 aa13.64□□□□□ -0.23
COL9A3-212ENST00000481800 CREBL2O60519 120 aaPredicted RBP13.64□□□□□ -0.23
COL9A3-212ENST00000481800 SLURP1P55000 103 aa13.64□□□□□ -0.23
COL9A3-212ENST00000481800 TNXAQ16473 311 aa13.64□□□□□ -0.23
COL9A3-212ENST00000481800 IDO2Q6ZQW0 420 aa13.64□□□□□ -0.23
COL9A3-212ENST00000481800 ZNF429Q86V71 674 aa13.64□□□□□ -0.23
COL9A3-212ENST00000481800 HOGA1Q86XE5 327 aa13.64□□□□□ -0.23
COL9A3-212ENST00000481800 DLX4Q92988 240 aaPredicted RBP13.64□□□□□ -0.23
COL9A3-212ENST00000481800 PRR25Q96S07 402 aa13.64□□□□□ -0.23
COL9A3-212ENST00000481800 AUNIPQ9H7T9 357 aa13.64□□□□□ -0.23
COL9A3-212ENST00000481800 IGKV1D-13A0A0B4J2D9 117 aa13.63□□□□□ -0.23
COL9A3-212ENST00000481800 MSGN1A6NI15 193 aa13.63□□□□□ -0.23
COL9A3-212ENST00000481800 MPPED1O15442 326 aa13.63□□□□□ -0.23
COL9A3-212ENST00000481800 SAP30O75446 220 aa13.63□□□□□ -0.23
COL9A3-212ENST00000481800 ACTL6BO94805 426 aa13.63□□□□□ -0.23
COL9A3-212ENST00000481800 LY86O95711 162 aa13.63□□□□□ -0.23
COL9A3-212ENST00000481800 IGKV1-13P0DP09 117 aa13.63□□□□□ -0.23
COL9A3-212ENST00000481800 TGFBR1P36897 503 aa13.63□□□□□ -0.23
COL9A3-212ENST00000481800 CBX5P45973 191 aa13.63□□□□□ -0.23
COL9A3-212ENST00000481800 LSM3P62310 102 aaKnown RBP13.63□□□□□ -0.23
COL9A3-212ENST00000481800 SSBP2P81877 361 aaPredicted RBP13.63□□□□□ -0.23
COL9A3-212ENST00000481800 PRSS8Q16651 343 aa13.63□□□□□ -0.23
COL9A3-212ENST00000481800 OR2B11Q5JQS5 317 aa13.63□□□□□ -0.23
COL9A3-212ENST00000481800 GVQW1Q8N7I0 195 aa13.63□□□□□ -0.23
COL9A3-212ENST00000481800 TCTEX1D2Q8WW35 142 aa13.63□□□□□ -0.23
COL9A3-212ENST00000481800 ACOT12Q8WYK0 555 aa13.63□□□□□ -0.23
COL9A3-212ENST00000481800 YIPF6Q96EC8 236 aa13.63□□□□□ -0.23
COL9A3-212ENST00000481800 S100A16Q96FQ6 103 aaKnown RBP13.63□□□□□ -0.23
COL9A3-212ENST00000481800 HSD17B10Q99714 261 aaKnown RBP13.63□□□□□ -0.23
COL9A3-212ENST00000481800 AADACP22760 399 aa13.62□□□□□ -0.23
COL9A3-212ENST00000481800 RPS19P39019 145 aaKnown RBP13.62□□□□□ -0.23
COL9A3-212ENST00000481800 B9D2Q9BPU9 175 aa13.62□□□□□ -0.23
COL9A3-212ENST00000481800 COA4Q9NYJ1 87 aa13.62□□□□□ -0.23
COL9A3-212ENST00000481800 ZNF256Q9Y2P7 627 aaPredicted RBP13.62□□□□□ -0.23
COL9A3-212ENST00000481800 IGLV2-14P01704 120 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms