RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 LDLRAD4O15165 306 aa13.51□□□□□ -0.25
COL7A1-206ENST00000466591 CRYZL1O95825 349 aa13.51□□□□□ -0.25
COL7A1-206ENST00000466591 APELAP0DMC3 54 aa13.51□□□□□ -0.25
COL7A1-206ENST00000466591 AADACP22760 399 aa13.51□□□□□ -0.25
COL7A1-206ENST00000466591 SSX1Q16384 188 aa13.51□□□□□ -0.25
COL7A1-206ENST00000466591 RHOVQ96L33 236 aa13.51□□□□□ -0.25
COL7A1-206ENST00000466591 ST6GALNAC5Q9BVH7 336 aa13.51□□□□□ -0.25
COL7A1-206ENST00000466591 Q9H521 79 aa13.51□□□□□ -0.25
COL7A1-206ENST00000466591 RAB26Q9ULW5 256 aa13.51□□□□□ -0.25
COL7A1-206ENST00000466591 MFNGO00587 321 aa13.5□□□□□ -0.25
COL7A1-206ENST00000466591 PROP1O75360 226 aa13.5□□□□□ -0.25
COL7A1-206ENST00000466591 DIRAS3O95661 229 aa13.5□□□□□ -0.25
COL7A1-206ENST00000466591 SGPP2Q8IWX5 399 aa13.5□□□□□ -0.25
COL7A1-206ENST00000466591 MRPS7Q9Y2R9 242 aaKnown RBP13.5□□□□□ -0.25
COL7A1-206ENST00000466591 KCNK7Q9Y2U2 307 aa13.5□□□□□ -0.25
COL7A1-206ENST00000466591 A0A0B4J203 849 aa13.49□□□□□ -0.25
COL7A1-206ENST00000466591 SCGNO76038 276 aa13.49□□□□□ -0.25
COL7A1-206ENST00000466591 CD36P16671 472 aa13.49□□□□□ -0.25
COL7A1-206ENST00000466591 GNG2P59768 71 aa13.49□□□□□ -0.25
COL7A1-206ENST00000466591 GABARAPL2P60520 117 aa13.49□□□□□ -0.25
COL7A1-206ENST00000466591 PJVKQ0ZLH3 352 aa13.49□□□□□ -0.25
COL7A1-206ENST00000466591 HAPLN4Q86UW8 402 aa13.49□□□□□ -0.25
COL7A1-206ENST00000466591 RCHY1Q96PM5 261 aa13.49□□□□□ -0.25
COL7A1-206ENST00000466591 PALMDQ9NP74 551 aa13.49□□□□□ -0.25
COL7A1-206ENST00000466591 PRELID3BQ9Y3B1 194 aa13.49□□□□□ -0.25
COL7A1-206ENST00000466591 RAB27BO00194 218 aa13.48□□□□□ -0.25
COL7A1-206ENST00000466591 TUSC2O75896 110 aa13.48□□□□□ -0.25
COL7A1-206ENST00000466591 CTXN2P0C2S0 81 aa13.48□□□□□ -0.25
COL7A1-206ENST00000466591 FRMD6-AS1P0C7T7 363 aa13.48□□□□□ -0.25
COL7A1-206ENST00000466591 RPEL1Q2QD12 228 aa13.48□□□□□ -0.25
COL7A1-206ENST00000466591 CDNFQ49AH0 187 aa13.48□□□□□ -0.25
COL7A1-206ENST00000466591 TMEM177Q53S58 311 aa13.48□□□□□ -0.25
COL7A1-206ENST00000466591 KCTD9Q7L273 389 aa13.48□□□□□ -0.25
COL7A1-206ENST00000466591 PEF1Q9UBV8 284 aaKnown RBP13.48□□□□□ -0.25
COL7A1-206ENST00000466591 DAPK2Q9UIK4 370 aa13.48□□□□□ -0.25
COL7A1-206ENST00000466591 SSR3Q9UNL2 185 aa13.48□□□□□ -0.25
COL7A1-206ENST00000466591 DNAH9Q9NYC9 4486 aa13.47□□□□□ -0.25
COL7A1-206ENST00000466591 MSGN1A6NI15 193 aa13.47□□□□□ -0.25
COL7A1-206ENST00000466591 TRIM64CA6NLI5 447 aa13.47□□□□□ -0.25
COL7A1-206ENST00000466591 C3orf84H3BNL1 204 aa13.47□□□□□ -0.25
COL7A1-206ENST00000466591 FCGR3BO75015 233 aa13.47□□□□□ -0.25
COL7A1-206ENST00000466591 IGLV2-23P01705 113 aa13.47□□□□□ -0.25
COL7A1-206ENST00000466591 SNRPBP14678 240 aaKnown RBP13.47□□□□□ -0.25
COL7A1-206ENST00000466591 GALP22466 123 aa13.47□□□□□ -0.25
COL7A1-206ENST00000466591 DTYMKP23919 212 aa13.47□□□□□ -0.25
COL7A1-206ENST00000466591 SYNJ2BPP57105 145 aa13.47□□□□□ -0.25
COL7A1-206ENST00000466591 UBE2KP61086 200 aa13.47□□□□□ -0.25
COL7A1-206ENST00000466591 OR2B11Q5JQS5 317 aa13.47□□□□□ -0.25
COL7A1-206ENST00000466591 IDO2Q6ZQW0 420 aa13.47□□□□□ -0.25
COL7A1-206ENST00000466591 SBSPONQ8IVN8 264 aa13.47□□□□□ -0.25
COL7A1-206ENST00000466591 TEX45Q8NA69 505 aa13.47□□□□□ -0.25
COL7A1-206ENST00000466591 OSR1Q8TAX0 266 aaPredicted RBP13.47□□□□□ -0.25
COL7A1-206ENST00000466591 FCGR1BQ92637 280 aa13.47□□□□□ -0.25
COL7A1-206ENST00000466591 USMG5Q96IX5 58 aa13.47□□□□□ -0.25
COL7A1-206ENST00000466591 TINAGL1Q9GZM7 467 aaPredicted RBP13.47□□□□□ -0.25
COL7A1-206ENST00000466591 DPPA5A6NC42 116 aa13.46□□□□□ -0.25
COL7A1-206ENST00000466591 NOTOA8MTQ0 251 aa13.46□□□□□ -0.25
COL7A1-206ENST00000466591 H0Y980 276 aa13.46□□□□□ -0.25
COL7A1-206ENST00000466591 MRPS14O60783 128 aaKnown RBP13.46□□□□□ -0.25
COL7A1-206ENST00000466591 SLC22A5O76082 557 aa13.46□□□□□ -0.25
COL7A1-206ENST00000466591 OR9G9P0C7N8 305 aa13.46□□□□□ -0.25
COL7A1-206ENST00000466591 DUTP33316 252 aaKnown RBP13.46□□□□□ -0.25
COL7A1-206ENST00000466591 DEFA5Q01523 94 aa13.46□□□□□ -0.25
COL7A1-206ENST00000466591 GTSCR1Q86UQ5 136 aa13.46□□□□□ -0.25
COL7A1-206ENST00000466591 H1FOOQ8IZA3 346 aaPredicted RBP13.46□□□□□ -0.25
COL7A1-206ENST00000466591 ZNF645Q8N7E2 425 aa13.46□□□□□ -0.25
COL7A1-206ENST00000466591 OR9G4Q8NGQ1 327 aa13.46□□□□□ -0.25
COL7A1-206ENST00000466591 SRSF12Q8WXF0 261 aaKnown RBP13.46□□□□□ -0.25
COL7A1-206ENST00000466591 SPIN2AQ99865 258 aa13.46□□□□□ -0.25
COL7A1-206ENST00000466591 SPIN2BQ9BPZ2 258 aa13.46□□□□□ -0.25
COL7A1-206ENST00000466591 RRP15Q9Y3B9 282 aaKnown RBP13.46□□□□□ -0.25
COL7A1-206ENST00000466591 SHISA3A0PJX4 238 aa13.45□□□□□ -0.26
COL7A1-206ENST00000466591 NFYAP23511 347 aaPredicted RBP13.45□□□□□ -0.26
COL7A1-206ENST00000466591 ARPC4P59998 168 aa13.45□□□□□ -0.26
COL7A1-206ENST00000466591 PRSS8Q16651 343 aa13.45□□□□□ -0.26
COL7A1-206ENST00000466591 HACD4Q5VWC8 232 aa13.45□□□□□ -0.26
COL7A1-206ENST00000466591 TCTEX1D2Q8WW35 142 aa13.45□□□□□ -0.26
COL7A1-206ENST00000466591 SNAPC3Q92966 411 aa13.45□□□□□ -0.26
COL7A1-206ENST00000466591 PEMTQ9UBM1 199 aa13.45□□□□□ -0.26
COL7A1-206ENST00000466591 OR2W1Q9Y3N9 320 aa13.45□□□□□ -0.26
COL7A1-206ENST00000466591 COL7A1Q02388 2944 aa13.45□□□□□ -0.26
COL7A1-206ENST00000466591 CRYGBP07316 175 aa13.44□□□□□ -0.26
COL7A1-206ENST00000466591 ATP5G2Q06055 141 aa13.44□□□□□ -0.26
COL7A1-206ENST00000466591 Q6ZS49 121 aa13.44□□□□□ -0.26
COL7A1-206ENST00000466591 TPRA1Q86W33 373 aa13.44□□□□□ -0.26
COL7A1-206ENST00000466591 MMD2Q8IY49 270 aa13.44□□□□□ -0.26
COL7A1-206ENST00000466591 NUDCD2Q8WVJ2 157 aa13.44□□□□□ -0.26
COL7A1-206ENST00000466591 DCSTAMPQ9H295 470 aa13.44□□□□□ -0.26
COL7A1-206ENST00000466591 TUBA4BQ9H853 241 aa13.44□□□□□ -0.26
COL7A1-206ENST00000466591 TXNL4BQ9NX01 149 aaKnown RBP13.44□□□□□ -0.26
COL7A1-206ENST00000466591 TMEM235A6NFC5 223 aa13.43□□□□□ -0.26
COL7A1-206ENST00000466591 FAM223BA6NKX1 122 aa13.43□□□□□ -0.26
COL7A1-206ENST00000466591 SRRM4A7MD48 611 aaKnown RBP13.43□□□□□ -0.26
COL7A1-206ENST00000466591 IGLV1-51P01701 117 aa13.43□□□□□ -0.26
COL7A1-206ENST00000466591 SAA1P0DJI8 122 aaPredicted RBP13.43□□□□□ -0.26
COL7A1-206ENST00000466591 RHOGP84095 191 aa13.43□□□□□ -0.26
COL7A1-206ENST00000466591 MXD1Q05195 221 aa13.43□□□□□ -0.26
COL7A1-206ENST00000466591 EXOSC2Q13868 293 aaKnown RBP13.43□□□□□ -0.26
COL7A1-206ENST00000466591 CDK10Q15131 360 aa13.43□□□□□ -0.26
COL7A1-206ENST00000466591 UBE2UQ5VVX9 321 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms