RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 CLVS1Q8IUQ0 354 aaPredicted RBP14.62□□□□□ -0.07
USP39-209ENST00000458268 ARPC1AQ92747 370 aa14.62□□□□□ -0.07
USP39-209ENST00000458268 SNAPC3Q92966 411 aa14.62□□□□□ -0.07
USP39-209ENST00000458268 GPHA2Q96T91 129 aa14.62□□□□□ -0.07
USP39-209ENST00000458268 KLK15Q9H2R5 256 aa14.62□□□□□ -0.07
USP39-209ENST00000458268 EHFQ9NZC4 300 aa14.62□□□□□ -0.07
USP39-209ENST00000458268 RBMX2Q9Y388 322 aaKnown RBP14.62□□□□□ -0.07
USP39-209ENST00000458268 NOTCH3Q9UM47 2321 aa14.61□□□□□ -0.07
USP39-209ENST00000458268 RRASP10301 218 aa14.61□□□□□ -0.07
USP39-209ENST00000458268 PRSS3P35030 304 aa14.61□□□□□ -0.07
USP39-209ENST00000458268 PJVKQ0ZLH3 352 aa14.61□□□□□ -0.07
USP39-209ENST00000458268 FXYD3Q14802 87 aa14.61□□□□□ -0.07
USP39-209ENST00000458268 CTF1Q16619 201 aa14.61□□□□□ -0.07
USP39-209ENST00000458268 MZT2AQ6P582 158 aa14.61□□□□□ -0.07
USP39-209ENST00000458268 IDO2Q6ZQW0 420 aa14.61□□□□□ -0.07
USP39-209ENST00000458268 MRPL41Q8IXM3 137 aaKnown RBP14.61□□□□□ -0.07
USP39-209ENST00000458268 LFNGQ8NES3 379 aa14.61□□□□□ -0.07
USP39-209ENST00000458268 MS4A10Q96PG2 267 aa14.61□□□□□ -0.07
USP39-209ENST00000458268 CCL28Q9NRJ3 127 aa14.61□□□□□ -0.07
USP39-209ENST00000458268 ZNF355PQ9NSJ1 428 aa14.61□□□□□ -0.07
USP39-209ENST00000458268 PRELID3BQ9Y3B1 194 aa14.61□□□□□ -0.07
USP39-209ENST00000458268 PPYP01298 95 aa14.6□□□□□ -0.07
USP39-209ENST00000458268 IGLV2-23P01705 113 aa14.6□□□□□ -0.07
USP39-209ENST00000458268 PMP2P02689 132 aa14.6□□□□□ -0.07
USP39-209ENST00000458268 APELAP0DMC3 54 aa14.6□□□□□ -0.07
USP39-209ENST00000458268 ELK1P19419 428 aa14.6□□□□□ -0.07
USP39-209ENST00000458268 LGALS7P47929 136 aa14.6□□□□□ -0.07
USP39-209ENST00000458268 HERV-K104P61576 105 aa14.6□□□□□ -0.07
USP39-209ENST00000458268 RPL30P62888 115 aaKnown RBP14.6□□□□□ -0.07
USP39-209ENST00000458268 TAGLNQ01995 201 aaKnown RBP14.6□□□□□ -0.07
USP39-209ENST00000458268 TMEM267Q0VDI3 215 aaPredicted RBP14.6□□□□□ -0.07
USP39-209ENST00000458268 CDK10Q15131 360 aa14.6□□□□□ -0.07
USP39-209ENST00000458268 BEAN1Q3B7T3 259 aa14.6□□□□□ -0.07
USP39-209ENST00000458268 VMA21Q3ZAQ7 101 aa14.6□□□□□ -0.07
USP39-209ENST00000458268 TMEM177Q53S58 311 aa14.6□□□□□ -0.07
USP39-209ENST00000458268 OR5AP2Q8NGF4 316 aa14.6□□□□□ -0.07
USP39-209ENST00000458268 ACOT12Q8WYK0 555 aa14.6□□□□□ -0.07
USP39-209ENST00000458268 RAX2Q96IS3 184 aa14.6□□□□□ -0.07
USP39-209ENST00000458268 PHB2Q99623 299 aa14.6□□□□□ -0.07
USP39-209ENST00000458268 SLC5A7Q9GZV3 580 aa14.6□□□□□ -0.07
USP39-209ENST00000458268 FOXA2Q9Y261 457 aaPredicted RBP14.6□□□□□ -0.07
USP39-209ENST00000458268 CCL24O00175 119 aa14.59□□□□□ -0.07
USP39-209ENST00000458268 SLC22A5O76082 557 aa14.59□□□□□ -0.07
USP39-209ENST00000458268 APOA1P02647 267 aa14.59□□□□□ -0.07
USP39-209ENST00000458268 PSMB8P28062 276 aa14.59□□□□□ -0.07
USP39-209ENST00000458268 PPIFP30405 207 aaKnown RBP14.59□□□□□ -0.07
USP39-209ENST00000458268 ALDH3B2P48448 385 aa14.59□□□□□ -0.07
USP39-209ENST00000458268 TNXAQ16473 311 aa14.59□□□□□ -0.07
USP39-209ENST00000458268 ACTBL2Q562R1 376 aa14.59□□□□□ -0.07
USP39-209ENST00000458268 LINC00482Q8N8I6 264 aa14.59□□□□□ -0.07
USP39-209ENST00000458268 OR5H2Q8NGV7 314 aa14.59□□□□□ -0.07
USP39-209ENST00000458268 AP3S1Q92572 193 aa14.59□□□□□ -0.07
USP39-209ENST00000458268 GNB4Q9HAV0 340 aa14.59□□□□□ -0.07
USP39-209ENST00000458268 SRRM4A7MD48 611 aaKnown RBP14.58□□□□□ -0.08
USP39-209ENST00000458268 ARPC1BO15143 372 aaKnown RBP14.58□□□□□ -0.08
USP39-209ENST00000458268 ZNF182P17025 639 aaPredicted RBP14.58□□□□□ -0.08
USP39-209ENST00000458268 HLA-DMAP28067 261 aa14.58□□□□□ -0.08
USP39-209ENST00000458268 MYCNOSP40205 109 aa14.58□□□□□ -0.08
USP39-209ENST00000458268 RFX2P48378 723 aa14.58□□□□□ -0.08
USP39-209ENST00000458268 PDLIM3Q53GG5 364 aaPredicted RBP14.58□□□□□ -0.08
USP39-209ENST00000458268 ZNF562Q6V9R5 426 aa14.58□□□□□ -0.08
USP39-209ENST00000458268 DDB2Q92466 427 aa14.58□□□□□ -0.08
USP39-209ENST00000458268 RGS5O15539 181 aa14.57□□□□□ -0.08
USP39-209ENST00000458268 SOX15O60248 233 aa14.57□□□□□ -0.08
USP39-209ENST00000458268 NOL3O60936 208 aaKnown RBP14.57□□□□□ -0.08
USP39-209ENST00000458268 IGHV3-11P01762 117 aa14.57□□□□□ -0.08
USP39-209ENST00000458268 EGR2P11161 476 aaPredicted RBP14.57□□□□□ -0.08
USP39-209ENST00000458268 CDX1P47902 265 aaPredicted RBP14.57□□□□□ -0.08
USP39-209ENST00000458268 RAB9AP51151 201 aa14.57□□□□□ -0.08
USP39-209ENST00000458268 TPPP2P59282 170 aa14.57□□□□□ -0.08
USP39-209ENST00000458268 SPCS2Q15005 226 aa14.57□□□□□ -0.08
USP39-209ENST00000458268 VKORC1L1Q8N0U8 176 aa14.57□□□□□ -0.08
USP39-209ENST00000458268 MFSD4AQ8N468 514 aa14.57□□□□□ -0.08
USP39-209ENST00000458268 OR5T1Q8NG75 326 aa14.57□□□□□ -0.08
USP39-209ENST00000458268 C4orf3Q8WVX3 66 aa14.57□□□□□ -0.08
USP39-209ENST00000458268 ZNF580Q9UK33 172 aa14.57□□□□□ -0.08
USP39-209ENST00000458268 NUBP2Q9Y5Y2 271 aa14.57□□□□□ -0.08
USP39-209ENST00000458268 MPPED1O15442 326 aa14.56□□□□□ -0.08
USP39-209ENST00000458268 IGLV2-14P01704 120 aa14.56□□□□□ -0.08
USP39-209ENST00000458268 SAA1P0DJI8 122 aaPredicted RBP14.56□□□□□ -0.08
USP39-209ENST00000458268 CD40LGP29965 261 aa14.56□□□□□ -0.08
USP39-209ENST00000458268 SLC6A1P30531 599 aa14.56□□□□□ -0.08
USP39-209ENST00000458268 HOXD3P31249 432 aaPredicted RBP14.56□□□□□ -0.08
USP39-209ENST00000458268 FOXB2Q5VYV0 432 aa14.56□□□□□ -0.08
USP39-209ENST00000458268 SSX9Q7RTT3 188 aa14.56□□□□□ -0.08
USP39-209ENST00000458268 ZNF491Q8N8L2 437 aa14.56□□□□□ -0.08
USP39-209ENST00000458268 RNF152Q8N8N0 203 aa14.56□□□□□ -0.08
USP39-209ENST00000458268 MINDY2Q8NBR6 621 aa14.56□□□□□ -0.08
USP39-209ENST00000458268 OR11H1Q8NG94 326 aa14.56□□□□□ -0.08
USP39-209ENST00000458268 OR4S2Q8NH73 311 aa14.56□□□□□ -0.08
USP39-209ENST00000458268 OSR1Q8TAX0 266 aaPredicted RBP14.56□□□□□ -0.08
USP39-209ENST00000458268 RCC1LQ96I51 464 aaKnown RBP14.56□□□□□ -0.08
USP39-209ENST00000458268 HSD17B10Q99714 261 aaKnown RBP14.56□□□□□ -0.08
USP39-209ENST00000458268 ZNF2Q9BSG1 426 aaPredicted RBP14.56□□□□□ -0.08
USP39-209ENST00000458268 ALX4Q9H161 411 aaPredicted RBP14.56□□□□□ -0.08
USP39-209ENST00000458268 EXTL2Q9UBQ6 330 aa14.56□□□□□ -0.08
USP39-209ENST00000458268 VSIG4Q9Y279 399 aa14.56□□□□□ -0.08
USP39-209ENST00000458268 ACTL6BO94805 426 aa14.55□□□□□ -0.08
USP39-209ENST00000458268 IGLV1-40P01703 118 aa14.55□□□□□ -0.08
USP39-209ENST00000458268 HRH1P35367 487 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms