RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 ADARB2-AS1A8MUL3 147 aa14.67□□□□□ -0.06
SHH-203ENST00000435425 IGLV2-23P01705 113 aa14.67□□□□□ -0.06
SHH-203ENST00000435425 LGALS7P47929 136 aa14.67□□□□□ -0.06
SHH-203ENST00000435425 TSPAN5P62079 268 aa14.67□□□□□ -0.06
SHH-203ENST00000435425 IL18Q14116 193 aa14.67□□□□□ -0.06
SHH-203ENST00000435425 TMEM177Q53S58 311 aa14.67□□□□□ -0.06
SHH-203ENST00000435425 MFSD4AQ8N468 514 aa14.67□□□□□ -0.06
SHH-203ENST00000435425 FCAMRQ8WWV6 532 aa14.67□□□□□ -0.06
SHH-203ENST00000435425 R3HDM4Q96D70 268 aa14.67□□□□□ -0.06
SHH-203ENST00000435425 HSD17B10Q99714 261 aaKnown RBP14.67□□□□□ -0.06
SHH-203ENST00000435425 GON7Q9BXV9 100 aa14.67□□□□□ -0.06
SHH-203ENST00000435425 RBM38Q9H0Z9 239 aaKnown RBP14.67□□□□□ -0.06
SHH-203ENST00000435425 MMP27Q9H306 513 aa14.67□□□□□ -0.06
SHH-203ENST00000435425 KLK11Q9UBX7 282 aa14.67□□□□□ -0.06
SHH-203ENST00000435425 TSSC4Q9Y5U2 329 aaPredicted RBP14.67□□□□□ -0.06
SHH-203ENST00000435425 A3GALT2U3KPV4 340 aa14.67□□□□□ -0.06
SHH-203ENST00000435425 PLXNB1O43157 2135 aa14.66□□□□□ -0.06
SHH-203ENST00000435425 G3V318 75 aa14.66□□□□□ -0.06
SHH-203ENST00000435425 M0QYG6 137 aa14.66□□□□□ -0.06
SHH-203ENST00000435425 SPDEFO95238 335 aa14.66□□□□□ -0.06
SHH-203ENST00000435425 CA2P00918 260 aa14.66□□□□□ -0.06
SHH-203ENST00000435425 GNB1P62873 340 aa14.66□□□□□ -0.06
SHH-203ENST00000435425 CX3CL1P78423 397 aa14.66□□□□□ -0.06
SHH-203ENST00000435425 DHRS11Q6UWP2 260 aa14.66□□□□□ -0.06
SHH-203ENST00000435425 LCNL1Q6ZST4 164 aa14.66□□□□□ -0.06
SHH-203ENST00000435425 OR6F1Q8NGZ6 308 aa14.66□□□□□ -0.06
SHH-203ENST00000435425 C15orf40Q8WUR7 153 aa14.66□□□□□ -0.06
SHH-203ENST00000435425 SRRM4A7MD48 611 aaKnown RBP14.65□□□□□ -0.06
SHH-203ENST00000435425 IGF1P05019 195 aa14.65□□□□□ -0.06
SHH-203ENST00000435425 DGCR2P98153 550 aa14.65□□□□□ -0.06
SHH-203ENST00000435425 NDPQ00604 133 aa14.65□□□□□ -0.06
SHH-203ENST00000435425 EIF4EBP1Q13541 118 aaPredicted RBP14.65□□□□□ -0.06
SHH-203ENST00000435425 ECSCRQ19T08 205 aa14.65□□□□□ -0.06
SHH-203ENST00000435425 ZNF660Q6AZW8 331 aaPredicted RBP14.65□□□□□ -0.06
SHH-203ENST00000435425 TEX38Q6PEX7 206 aa14.65□□□□□ -0.06
SHH-203ENST00000435425 ZNF66Q6ZN08 573 aa14.65□□□□□ -0.06
SHH-203ENST00000435425 ZNF818PQ6ZRF7 136 aa14.65□□□□□ -0.06
SHH-203ENST00000435425 COMMD1Q8N668 190 aa14.65□□□□□ -0.06
SHH-203ENST00000435425 MOB3AQ96BX8 217 aa14.65□□□□□ -0.06
SHH-203ENST00000435425 FAM103A1Q9BTL3 118 aaKnown RBP14.65□□□□□ -0.06
SHH-203ENST00000435425 FBXO7Q9Y3I1 522 aa14.65□□□□□ -0.06
SHH-203ENST00000435425 TRAV41A0A0B4J266 112 aa14.64□□□□□ -0.07
SHH-203ENST00000435425 TPPPO94811 219 aa14.64□□□□□ -0.07
SHH-203ENST00000435425 TNFSF8P32971 234 aa14.64□□□□□ -0.07
SHH-203ENST00000435425 PJVKQ0ZLH3 352 aa14.64□□□□□ -0.07
SHH-203ENST00000435425 VMA21Q3ZAQ7 101 aa14.64□□□□□ -0.07
SHH-203ENST00000435425 PPP1R27Q86WC6 154 aa14.64□□□□□ -0.07
SHH-203ENST00000435425 ZBTB34Q8NCN2 500 aa14.64□□□□□ -0.07
SHH-203ENST00000435425 OR4F17Q8NGA8 305 aa14.64□□□□□ -0.07
SHH-203ENST00000435425 OSR1Q8TAX0 266 aaPredicted RBP14.64□□□□□ -0.07
SHH-203ENST00000435425 OR4F4Q96R69 305 aa14.64□□□□□ -0.07
SHH-203ENST00000435425 FXYD6Q9H0Q3 95 aa14.64□□□□□ -0.07
SHH-203ENST00000435425 MTFP1Q9UDX5 166 aa14.64□□□□□ -0.07
SHH-203ENST00000435425 CNIH1O95406 144 aa14.63□□□□□ -0.07
SHH-203ENST00000435425 RPLP1P05386 114 aaKnown RBP14.63□□□□□ -0.07
SHH-203ENST00000435425 CRYGBP07316 175 aa14.63□□□□□ -0.07
SHH-203ENST00000435425 PF4V1P10720 104 aa14.63□□□□□ -0.07
SHH-203ENST00000435425 GNRHRP30968 328 aa14.63□□□□□ -0.07
SHH-203ENST00000435425 FXYD3Q14802 87 aa14.63□□□□□ -0.07
SHH-203ENST00000435425 MSMO1Q15800 293 aa14.63□□□□□ -0.07
SHH-203ENST00000435425 CXorf66Q5JRM2 361 aaPredicted RBP14.63□□□□□ -0.07
SHH-203ENST00000435425 PYHIN1Q6K0P9 492 aa14.63□□□□□ -0.07
SHH-203ENST00000435425 ZNF562Q6V9R5 426 aa14.63□□□□□ -0.07
SHH-203ENST00000435425 IDO2Q6ZQW0 420 aa14.63□□□□□ -0.07
SHH-203ENST00000435425 C18orf65Q6ZTR6 163 aa14.63□□□□□ -0.07
SHH-203ENST00000435425 OR51H1Q8NH63 302 aa14.63□□□□□ -0.07
SHH-203ENST00000435425 OR4S2Q8NH73 311 aa14.63□□□□□ -0.07
SHH-203ENST00000435425 GRPEL2Q8TAA5 225 aa14.63□□□□□ -0.07
SHH-203ENST00000435425 TINAGL1Q9GZM7 467 aaPredicted RBP14.63□□□□□ -0.07
SHH-203ENST00000435425 NXF2Q9GZY0 626 aaKnown RBP14.63□□□□□ -0.07
SHH-203ENST00000435425 NUDT19A8MXV4 375 aa14.62□□□□□ -0.07
SHH-203ENST00000435425 GABARAPH6UMI1 98 aa14.62□□□□□ -0.07
SHH-203ENST00000435425 CD3DP04234 171 aa14.62□□□□□ -0.07
SHH-203ENST00000435425 IFNA6P05013 189 aa14.62□□□□□ -0.07
SHH-203ENST00000435425 BRWD1-AS2P59051 145 aa14.62□□□□□ -0.07
SHH-203ENST00000435425 UBE2KP61086 200 aa14.62□□□□□ -0.07
SHH-203ENST00000435425 RPL23AP62750 156 aaKnown RBP14.62□□□□□ -0.07
SHH-203ENST00000435425 CFHR3Q02985 330 aa14.62□□□□□ -0.07
SHH-203ENST00000435425 CATR1Q13166 79 aa14.62□□□□□ -0.07
SHH-203ENST00000435425 ACTBL2Q562R1 376 aa14.62□□□□□ -0.07
SHH-203ENST00000435425 RNASE10Q5GAN6 216 aaKnown RBP14.62□□□□□ -0.07
SHH-203ENST00000435425 AADACL3Q5VUY0 350 aa14.62□□□□□ -0.07
SHH-203ENST00000435425 UNQ5815/PRO19632Q6UWF5 114 aa14.62□□□□□ -0.07
SHH-203ENST00000435425 VKORC1L1Q8N0U8 176 aa14.62□□□□□ -0.07
SHH-203ENST00000435425 ARPC1AQ92747 370 aa14.62□□□□□ -0.07
SHH-203ENST00000435425 A0A1W2PN81 502 aa14.61□□□□□ -0.07
SHH-203ENST00000435425 FABP12A6NFH5 140 aa14.61□□□□□ -0.07
SHH-203ENST00000435425 ARPC1BO15143 372 aaKnown RBP14.61□□□□□ -0.07
SHH-203ENST00000435425 SAA1P0DJI8 122 aaPredicted RBP14.61□□□□□ -0.07
SHH-203ENST00000435425 EGR2P11161 476 aaPredicted RBP14.61□□□□□ -0.07
SHH-203ENST00000435425 CHRNA7P36544 502 aa14.61□□□□□ -0.07
SHH-203ENST00000435425 FOXE3Q13461 319 aa14.61□□□□□ -0.07
SHH-203ENST00000435425 VAX1Q5SQQ9 334 aa14.61□□□□□ -0.07
SHH-203ENST00000435425 SPAG16Q8N0X2 631 aa14.61□□□□□ -0.07
SHH-203ENST00000435425 TEX45Q8NA69 505 aa14.61□□□□□ -0.07
SHH-203ENST00000435425 KLHL30-AS1Q8NEE0 82 aa14.61□□□□□ -0.07
SHH-203ENST00000435425 LFNGQ8NES3 379 aa14.61□□□□□ -0.07
SHH-203ENST00000435425 BORCS5Q969J3 196 aa14.61□□□□□ -0.07
SHH-203ENST00000435425 ZFP57Q9NU63 452 aa14.61□□□□□ -0.07
SHH-203ENST00000435425 ZNF580Q9UK33 172 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms