RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 SNX22Q96L94 193 aa12.3□□□□□ -0.44
USP4-203ENST00000415188 CIB3Q96Q77 187 aaPredicted RBP12.3□□□□□ -0.44
USP4-203ENST00000415188 MSL2Q9HCI7 577 aa12.3□□□□□ -0.44
USP4-203ENST00000415188 RAB9BQ9NP90 201 aa12.3□□□□□ -0.44
USP4-203ENST00000415188 RPS10P5Q9NQ39 176 aa12.3□□□□□ -0.44
USP4-203ENST00000415188 BIN3Q9NQY0 253 aa12.3□□□□□ -0.44
USP4-203ENST00000415188 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.3□□□□□ -0.44
USP4-203ENST00000415188 UFSP2Q9NUQ7 469 aa12.3□□□□□ -0.44
USP4-203ENST00000415188 PRELID1Q9Y255 219 aa12.3□□□□□ -0.44
USP4-203ENST00000415188 KIAA2026Q5HYC2 2103 aa12.3□□□□□ -0.44
USP4-203ENST00000415188 IGHV3-64DA0A0J9YX35 117 aa12.29□□□□□ -0.44
USP4-203ENST00000415188 FAM90A9PA6NNJ1 464 aa12.29□□□□□ -0.44
USP4-203ENST00000415188 H3BP45 60 aa12.29□□□□□ -0.44
USP4-203ENST00000415188 C15orf65H3BRN8 121 aa12.29□□□□□ -0.44
USP4-203ENST00000415188 M0R036 132 aa12.29□□□□□ -0.44
USP4-203ENST00000415188 MGST3O14880 152 aa12.29□□□□□ -0.44
USP4-203ENST00000415188 ZNF737O75373 536 aa12.29□□□□□ -0.44
USP4-203ENST00000415188 GOSR1O95249 250 aa12.29□□□□□ -0.44
USP4-203ENST00000415188 MT-ND4LP03901 98 aa12.29□□□□□ -0.44
USP4-203ENST00000415188 IAPPP10997 89 aa12.29□□□□□ -0.44
USP4-203ENST00000415188 IZUMO4Q1ZYL8 232 aa12.29□□□□□ -0.44
USP4-203ENST00000415188 CR1LQ2VPA4 569 aa12.29□□□□□ -0.44
USP4-203ENST00000415188 LILRB2Q8N423 598 aa12.29□□□□□ -0.44
USP4-203ENST00000415188 MBD3L1Q8WWY6 194 aa12.29□□□□□ -0.44
USP4-203ENST00000415188 MRPL37Q9BZE1 423 aaKnown RBP12.29□□□□□ -0.44
USP4-203ENST00000415188 JPT1Q9UK76 154 aa12.29□□□□□ -0.44
USP4-203ENST00000415188 MEX3AA1L020 520 aaKnown RBP12.28□□□□□ -0.44
USP4-203ENST00000415188 DEFB108AA8MXU0 73 aa12.28□□□□□ -0.44
USP4-203ENST00000415188 GPR37O15354 613 aa12.28□□□□□ -0.44
USP4-203ENST00000415188 CRYAAP02489 173 aa12.28□□□□□ -0.44
USP4-203ENST00000415188 SRP19P09132 144 aaKnown RBP12.28□□□□□ -0.44
USP4-203ENST00000415188 METTL15P1P0C7V9 234 aa12.28□□□□□ -0.44
USP4-203ENST00000415188 GLIPR1P48060 266 aa12.28□□□□□ -0.44
USP4-203ENST00000415188 RAB13P51153 203 aa12.28□□□□□ -0.44
USP4-203ENST00000415188 KLF3P57682 345 aaPredicted RBP12.28□□□□□ -0.44
USP4-203ENST00000415188 C22orf34Q6ZV56 151 aa12.28□□□□□ -0.44
USP4-203ENST00000415188 HAPLN4Q86UW8 402 aa12.28□□□□□ -0.44
USP4-203ENST00000415188 CD177Q8N6Q3 437 aa12.28□□□□□ -0.44
USP4-203ENST00000415188 WFDC11Q8NEX6 87 aa12.28□□□□□ -0.44
USP4-203ENST00000415188 OR2Z1Q8NG97 314 aa12.28□□□□□ -0.44
USP4-203ENST00000415188 OR13A1Q8NGR1 328 aa12.28□□□□□ -0.44
USP4-203ENST00000415188 CLDND2Q8NHS1 167 aa12.28□□□□□ -0.44
USP4-203ENST00000415188 TCTEX1D2Q8WW35 142 aa12.28□□□□□ -0.44
USP4-203ENST00000415188 MUCL1Q96DR8 90 aa12.28□□□□□ -0.44
USP4-203ENST00000415188 C5orf30Q96GV9 206 aa12.28□□□□□ -0.44
USP4-203ENST00000415188 ABHD14AQ9BUJ0 271 aa12.28□□□□□ -0.44
USP4-203ENST00000415188 RBKSQ9H477 322 aa12.28□□□□□ -0.44
USP4-203ENST00000415188 FZR1Q9UM11 496 aa12.28□□□□□ -0.44
USP4-203ENST00000415188 LRRC30A6NM36 301 aa12.27□□□□□ -0.44
USP4-203ENST00000415188 ITGB1BP1O14713 200 aa12.27□□□□□ -0.44
USP4-203ENST00000415188 CRYBA1P05813 215 aa12.27□□□□□ -0.44
USP4-203ENST00000415188 SNRNP70P08621 437 aaKnown RBP12.27□□□□□ -0.44
USP4-203ENST00000415188 RAB5BP61020 215 aa12.27□□□□□ -0.44
USP4-203ENST00000415188 RPL30P62888 115 aaKnown RBP12.27□□□□□ -0.44
USP4-203ENST00000415188 NKX6-1P78426 367 aaPredicted RBP12.27□□□□□ -0.44
USP4-203ENST00000415188 CCL20P78556 96 aa12.27□□□□□ -0.44
USP4-203ENST00000415188 SLC38A11Q08AI6 406 aa12.27□□□□□ -0.44
USP4-203ENST00000415188 PMS2P11Q13670 270 aa12.27□□□□□ -0.44
USP4-203ENST00000415188 CENPVQ7Z7K6 275 aaPredicted RBP12.27□□□□□ -0.44
USP4-203ENST00000415188 SFT2D1Q8WV19 159 aa12.27□□□□□ -0.44
USP4-203ENST00000415188 WDR61Q9GZS3 305 aaKnown RBP12.27□□□□□ -0.44
USP4-203ENST00000415188 GSX1Q9H4S2 264 aaPredicted RBP12.27□□□□□ -0.44
USP4-203ENST00000415188 ELOVL5Q9NYP7 299 aa12.27□□□□□ -0.44
USP4-203ENST00000415188 HEATR1Q9H583 2144 aaKnown RBP12.27□□□□□ -0.45
USP4-203ENST00000415188 IGLV3-9A0A075B6K5 115 aa12.27□□□□□ -0.45
USP4-203ENST00000415188 LOC102723971A0A1B0GUV8 181 aa12.27□□□□□ -0.45
USP4-203ENST00000415188 ODAMA1E959 279 aa12.27□□□□□ -0.45
USP4-203ENST00000415188 C16orf97H3BN30 126 aa12.27□□□□□ -0.45
USP4-203ENST00000415188 M0R1B8 84 aa12.27□□□□□ -0.45
USP4-203ENST00000415188 YPEL1O60688 119 aa12.27□□□□□ -0.45
USP4-203ENST00000415188 NDUFS6O75380 124 aaKnown RBP12.27□□□□□ -0.45
USP4-203ENST00000415188 OR13C7P0DN81 318 aa12.27□□□□□ -0.45
USP4-203ENST00000415188 MAS1LP35410 378 aa12.27□□□□□ -0.45
USP4-203ENST00000415188 GATA4P43694 442 aa12.27□□□□□ -0.45
USP4-203ENST00000415188 ZNF83P51522 516 aa12.27□□□□□ -0.45
USP4-203ENST00000415188 ARL16Q0P5N6 197 aa12.27□□□□□ -0.45
USP4-203ENST00000415188 ICAM4Q14773 271 aa12.27□□□□□ -0.45
USP4-203ENST00000415188 TMEM41BQ5BJD5 291 aa12.27□□□□□ -0.45
USP4-203ENST00000415188 SPANXN5Q5MJ07 72 aa12.27□□□□□ -0.45
USP4-203ENST00000415188 HIST1H2BAQ96A08 127 aa12.27□□□□□ -0.45
USP4-203ENST00000415188 S100PBPQ96BU1 408 aa12.27□□□□□ -0.45
USP4-203ENST00000415188 MEGF10Q96KG7 1140 aa12.27□□□□□ -0.45
USP4-203ENST00000415188 YPEL2Q96QA6 119 aa12.27□□□□□ -0.45
USP4-203ENST00000415188 CLCC1Q96S66 551 aa12.27□□□□□ -0.45
USP4-203ENST00000415188 RARRES2Q99969 163 aa12.27□□□□□ -0.45
USP4-203ENST00000415188 TMEM147Q9BVK8 224 aa12.27□□□□□ -0.45
USP4-203ENST00000415188 METRNQ9UJH8 293 aa12.27□□□□□ -0.45
USP4-203ENST00000415188 RFNGQ9Y644 331 aa12.27□□□□□ -0.45
USP4-203ENST00000415188 FLNAP21333 2647 aaKnown RBP12.26□□□□□ -0.45
USP4-203ENST00000415188 A0A087WWC5 75 aa12.26□□□□□ -0.45
USP4-203ENST00000415188 C17orf98A8MV24 154 aa12.26□□□□□ -0.45
USP4-203ENST00000415188 C1orf196B1AJZ1 125 aa12.26□□□□□ -0.45
USP4-203ENST00000415188 F2RL2O00254 374 aa12.26□□□□□ -0.45
USP4-203ENST00000415188 RBFOX2O43251 390 aaKnown RBP eCLIP12.26□□□□□ -0.45
USP4-203ENST00000415188 RAMP3O60896 148 aa12.26□□□□□ -0.45
USP4-203ENST00000415188 S1PR2O95136 353 aa12.26□□□□□ -0.45
USP4-203ENST00000415188 IFNA1P01562 189 aa12.26□□□□□ -0.45
USP4-203ENST00000415188 IFNA4P05014 189 aa12.26□□□□□ -0.45
USP4-203ENST00000415188 EGR1P18146 543 aa12.26□□□□□ -0.45
USP4-203ENST00000415188 PTAFRP25105 342 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms