RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 MPV17LQ2QL34 196 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 SLC35E3Q7Z769 313 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 DTX1Q86Y01 620 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 RAX2Q96IS3 184 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 CHCHD2Q9Y6H1 151 aaPredicted RBP6.27□□□□□ -1.41
SCN9A-202ENST00000409435 IGLV3-12A0A075B6K2 115 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 TRAV8-4A0A0B4J246 113 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 A0A0G2JMM0 328 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 A0A1W2PPB8 328 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 A0A1W2PRS3 328 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 A0A1W2PS18 150 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 C17orf100A8MU93 164 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 KIR3DP1A8MWS1 328 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 J3QT63 122 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 HPXP02790 462 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 TRGC2P03986 189 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 LGALS3P17931 250 aaKnown RBP6.26□□□□□ -1.41
SCN9A-202ENST00000409435 MVDP53602 400 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 HERPUD1Q15011 391 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 C16orf82Q7Z2V1 217 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 C5orf30Q96GV9 206 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 MGST2Q99735 147 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 TMEM147Q9BVK8 224 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 MIXL1Q9H2W2 232 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 SLC25A22Q9H936 323 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 IGHV3OR16-12A0A075B7B8 117 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 LINC00614P0C842 121 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 CEACAM6P40199 344 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 ATP5G2Q06055 141 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 POC1AQ8NBT0 407 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 KLF14Q8TD94 323 aaPredicted RBP6.26□□□□□ -1.41
SCN9A-202ENST00000409435 SSMEM1Q8WWF3 244 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 MRPL24Q96A35 216 aaKnown RBP6.26□□□□□ -1.41
SCN9A-202ENST00000409435 SFT2D2O95562 160 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 ONECUT2O95948 504 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 COL10A1Q03692 680 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 OTPQ5XKR4 325 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 C20orf196Q8IYI0 205 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 RCC2Q9P258 522 aaKnown RBP6.26□□□□□ -1.41
SCN9A-202ENST00000409435 H3BP45 60 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 CECR9P0C854 216 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 NUTF2P61970 127 aaKnown RBP6.26□□□□□ -1.41
SCN9A-202ENST00000409435 SNAI3Q3KNW1 292 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 OR52N4Q8NGI2 321 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 WDFY2Q96P53 400 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 MARVELD1Q9BSK0 173 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 CMC2Q9NRP2 79 aa6.26□□□□□ -1.41
SCN9A-202ENST00000409435 TRAV8-7A0A075B6U6 113 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 ZNF815PA8K554 130 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 LINC00587B1AMM8 73 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 IGHA1P01876 353 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 CD69Q07108 199 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 ZNF764Q96H86 408 aaPredicted RBP6.25□□□□□ -1.41
SCN9A-202ENST00000409435 MYO18AQ92614 2054 aaKnown RBP6.25□□□□□ -1.41
SCN9A-202ENST00000409435 NPIPB8E9PQR5 432 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 NPIPB9F8W1W9 429 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 GSTZ1O43708 216 aaPredicted RBP6.25□□□□□ -1.41
SCN9A-202ENST00000409435 NPIPB7O75200 414 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 HKR1P10072 659 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 IGHV1-2P23083 117 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 FGF8P55075 233 aaPredicted RBP6.25□□□□□ -1.41
SCN9A-202ENST00000409435 RAE1P78406 368 aaKnown RBP6.25□□□□□ -1.41
SCN9A-202ENST00000409435 RBKSQ9H477 322 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 SEPSECSQ9HD40 501 aaKnown RBP6.25□□□□□ -1.41
SCN9A-202ENST00000409435 NR2C2APQ86WQ0 139 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 SYS1Q8N2H4 156 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 HSPB7Q9UBY9 170 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 DTX4Q9Y2E6 619 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 F11RQ9Y624 299 aaKnown RBP6.25□□□□□ -1.41
SCN9A-202ENST00000409435 SIRT4Q9Y6E7 314 aaPredicted RBP6.25□□□□□ -1.41
SCN9A-202ENST00000409435 TRAV1-2A0A0B4J238 106 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 SEMG1P04279 462 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 FUT3P21217 361 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 C2orf68Q2NKX9 166 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 ATG4DQ86TL0 474 aaPredicted RBP6.25□□□□□ -1.41
SCN9A-202ENST00000409435 ZNF525Q8N782 197 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 TMEM45BQ96B21 275 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 TSPAN32Q96QS1 320 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 A0A0G2JLM5 398 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 K7N7A8 449 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 HLA-DQA1P01909 254 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 OPRK1P41145 380 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 TNFRSF9Q07011 255 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 TTC9CQ8N5M4 171 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 APCDD1LQ8NCL9 501 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 OR4S2Q8NH73 311 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 NDUFAF3Q9BU61 184 aa6.25□□□□□ -1.41
SCN9A-202ENST00000409435 IGHV2OR16-5A0A0B4J2B6 119 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 FCGR3BO75015 233 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 SAP30O75446 220 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 MSMBP08118 114 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 SBK3P0C264 359 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 P2RY1P47900 373 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 LRRC75BQ2VPJ9 315 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 PSMG4Q5JS54 123 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 DEGS2Q6QHC5 323 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 ZNF562Q6V9R5 426 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 DMRTC2Q8IXT2 367 aaPredicted RBP6.24□□□□□ -1.41
SCN9A-202ENST00000409435 CLEC5AQ9NY25 188 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 CACNA1EQ15878 2313 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms