RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 C11orf44Q8N8P7 122 aa7.35□□□□□ -1.23
VPS53-203ENST00000401468 OR51S1Q8NGJ8 323 aa7.35□□□□□ -1.23
VPS53-203ENST00000401468 SGMS2Q8NHU3 365 aa7.35□□□□□ -1.23
VPS53-203ENST00000401468 BORCS5Q969J3 196 aa7.35□□□□□ -1.23
VPS53-203ENST00000401468 TOMM40LQ969M1 308 aa7.35□□□□□ -1.23
VPS53-203ENST00000401468 RPEQ96AT9 228 aa7.35□□□□□ -1.23
VPS53-203ENST00000401468 ZNF486Q96H40 463 aaPredicted RBP7.35□□□□□ -1.23
VPS53-203ENST00000401468 S1PR3Q99500 378 aa7.35□□□□□ -1.23
VPS53-203ENST00000401468 NABP2Q9BQ15 211 aa7.35□□□□□ -1.23
VPS53-203ENST00000401468 PALMDQ9NP74 551 aa7.35□□□□□ -1.23
VPS53-203ENST00000401468 ZNF221Q9UK13 617 aa7.35□□□□□ -1.23
VPS53-203ENST00000401468 TBC1D24Q9ULP9 559 aa7.35□□□□□ -1.23
VPS53-203ENST00000401468 POMT1Q9Y6A1 747 aa7.35□□□□□ -1.23
VPS53-203ENST00000401468 PRKDCP78527 4128 aaKnown RBP7.35□□□□□ -1.23
VPS53-203ENST00000401468 TSPAN15O95858 294 aa7.34□□□□□ -1.23
VPS53-203ENST00000401468 IFNA6P05013 189 aa7.34□□□□□ -1.23
VPS53-203ENST00000401468 SLC6A1P30531 599 aa7.34□□□□□ -1.23
VPS53-203ENST00000401468 DUTP33316 252 aaKnown RBP7.34□□□□□ -1.23
VPS53-203ENST00000401468 HERV-K104P61576 105 aa7.34□□□□□ -1.23
VPS53-203ENST00000401468 TSPAN5P62079 268 aa7.34□□□□□ -1.23
VPS53-203ENST00000401468 DEFA6Q01524 100 aa7.34□□□□□ -1.23
VPS53-203ENST00000401468 TAGLNQ01995 201 aaKnown RBP7.34□□□□□ -1.23
VPS53-203ENST00000401468 RPL39P5Q59GN2 51 aa7.34□□□□□ -1.23
VPS53-203ENST00000401468 ZNF66Q6ZN08 573 aa7.34□□□□□ -1.23
VPS53-203ENST00000401468 ZNF818PQ6ZRF7 136 aa7.34□□□□□ -1.23
VPS53-203ENST00000401468 TGIF2LXQ8IUE1 241 aa7.34□□□□□ -1.23
VPS53-203ENST00000401468 SLC38A6Q8IZM9 456 aa7.34□□□□□ -1.23
VPS53-203ENST00000401468 ZNF383Q8NA42 475 aa7.34□□□□□ -1.23
VPS53-203ENST00000401468 OR5R1Q8NH85 324 aa7.34□□□□□ -1.23
VPS53-203ENST00000401468 ADTRPQ96IZ2 230 aa7.34□□□□□ -1.23
VPS53-203ENST00000401468 TSC22D3Q99576 134 aa7.34□□□□□ -1.23
VPS53-203ENST00000401468 SLC25A21Q9BQT8 299 aaPredicted RBP7.34□□□□□ -1.23
VPS53-203ENST00000401468 MRPL20Q9BYC9 149 aaKnown RBP7.34□□□□□ -1.23
VPS53-203ENST00000401468 SLC5A7Q9GZV3 580 aa7.34□□□□□ -1.23
VPS53-203ENST00000401468 FAM212BQ9NTI7 297 aaPredicted RBP7.34□□□□□ -1.23
VPS53-203ENST00000401468 SCP2D1Q9UJQ7 156 aa7.34□□□□□ -1.23
VPS53-203ENST00000401468 GPR132Q9UNW8 380 aa7.34□□□□□ -1.23
VPS53-203ENST00000401468 FAM96BQ9Y3D0 163 aa7.34□□□□□ -1.23
VPS53-203ENST00000401468 HILPDAQ9Y5L2 63 aa7.34□□□□□ -1.23
VPS53-203ENST00000401468 LINC00473A8K010 186 aa7.33□□□□□ -1.24
VPS53-203ENST00000401468 H0YJW9 148 aa7.33□□□□□ -1.24
VPS53-203ENST00000401468 H3BUX3 64 aa7.33□□□□□ -1.24
VPS53-203ENST00000401468 GPR31O00270 319 aa7.33□□□□□ -1.24
VPS53-203ENST00000401468 TIMM23O14925 209 aa7.33□□□□□ -1.24
VPS53-203ENST00000401468 LYRM1O43325 122 aa7.33□□□□□ -1.24
VPS53-203ENST00000401468 BRS3P32247 399 aa7.33□□□□□ -1.24
VPS53-203ENST00000401468 ARHGDIBP52566 201 aa7.33□□□□□ -1.24
VPS53-203ENST00000401468 BRWD1-AS2P59051 145 aa7.33□□□□□ -1.24
VPS53-203ENST00000401468 FXYD4P59646 89 aa7.33□□□□□ -1.24
VPS53-203ENST00000401468 FBLN7Q53RD9 439 aa7.33□□□□□ -1.24
VPS53-203ENST00000401468 PRR31Q5SQ13 230 aa7.33□□□□□ -1.24
VPS53-203ENST00000401468 ZNF57Q68EA5 555 aaPredicted RBP7.33□□□□□ -1.24
VPS53-203ENST00000401468 IDO2Q6ZQW0 420 aa7.33□□□□□ -1.24
VPS53-203ENST00000401468 Q6ZSV7 163 aa7.33□□□□□ -1.24
VPS53-203ENST00000401468 TCTEX1D1Q8N7M0 179 aa7.33□□□□□ -1.24
VPS53-203ENST00000401468 LINC01006Q8NI28 216 aa7.33□□□□□ -1.24
VPS53-203ENST00000401468 FAM110DQ8TAY7 271 aaPredicted RBP7.33□□□□□ -1.24
VPS53-203ENST00000401468 SECTM1Q8WVN6 248 aa7.33□□□□□ -1.24
VPS53-203ENST00000401468 SSMEM1Q8WWF3 244 aa7.33□□□□□ -1.24
VPS53-203ENST00000401468 HSD17B10Q99714 261 aaKnown RBP7.33□□□□□ -1.24
VPS53-203ENST00000401468 SSX3Q99909 188 aa7.33□□□□□ -1.24
VPS53-203ENST00000401468 CCL28Q9NRJ3 127 aa7.33□□□□□ -1.24
VPS53-203ENST00000401468 RNF150Q9ULK6 438 aa7.33□□□□□ -1.24
VPS53-203ENST00000401468 TNCP24821 2201 aa7.32□□□□□ -1.24
VPS53-203ENST00000401468 CLPSL1A2RUU4 121 aa7.32□□□□□ -1.24
VPS53-203ENST00000401468 A6NDX4 124 aa7.32□□□□□ -1.24
VPS53-203ENST00000401468 CENPXA8MT69 81 aa7.32□□□□□ -1.24
VPS53-203ENST00000401468 RBFOX2O43251 390 aaKnown RBP eCLIP7.32□□□□□ -1.248e-7■■□□□ 13.4
VPS53-203ENST00000401468 NDUFB6O95139 128 aa7.32□□□□□ -1.24
VPS53-203ENST00000401468 CTSDP07339 412 aaPredicted RBP7.32□□□□□ -1.24
VPS53-203ENST00000401468 MC5RP33032 325 aa7.32□□□□□ -1.24
VPS53-203ENST00000401468 REG1BP48304 166 aa7.32□□□□□ -1.24
VPS53-203ENST00000401468 THBS3P49746 956 aa7.32□□□□□ -1.24
VPS53-203ENST00000401468 RAB13P51153 203 aa7.32□□□□□ -1.24
VPS53-203ENST00000401468 MECP2P51608 486 aaKnown RBP7.32□□□□□ -1.24
VPS53-203ENST00000401468 RPL15P61313 204 aaKnown RBP7.32□□□□□ -1.24
VPS53-203ENST00000401468 RPL30P62888 115 aaKnown RBP7.32□□□□□ -1.24
VPS53-203ENST00000401468 RBMS2Q15434 407 aaKnown RBP7.32□□□□□ -1.24
VPS53-203ENST00000401468 LCE1DQ5T752 114 aa7.32□□□□□ -1.24
VPS53-203ENST00000401468 DHRS7BQ6IAN0 325 aaPredicted RBP7.32□□□□□ -1.24
VPS53-203ENST00000401468 CCBE1Q6UXH8 406 aaPredicted RBP7.32□□□□□ -1.24
VPS53-203ENST00000401468 PDPNQ86YL7 162 aa7.32□□□□□ -1.24
VPS53-203ENST00000401468 CADM3Q8N126 398 aa7.32□□□□□ -1.24
VPS53-203ENST00000401468 OR4F5Q8NH21 305 aa7.32□□□□□ -1.24
VPS53-203ENST00000401468 ZFAND1Q8TCF1 268 aa7.32□□□□□ -1.24
VPS53-203ENST00000401468 MARCH1Q8TCQ1 289 aa7.32□□□□□ -1.24
VPS53-203ENST00000401468 RNF5Q99942 180 aa7.32□□□□□ -1.24
VPS53-203ENST00000401468 RTBDNQ9BSG5 229 aaPredicted RBP7.32□□□□□ -1.24
VPS53-203ENST00000401468 KRTAP17-1Q9BYP8 105 aa7.32□□□□□ -1.24
VPS53-203ENST00000401468 DPAGT1Q9H3H5 408 aa7.32□□□□□ -1.24
VPS53-203ENST00000401468 C5orf66Q9H5L9 145 aa7.32□□□□□ -1.24
VPS53-203ENST00000401468 BEX1Q9HBH7 125 aa7.32□□□□□ -1.24
VPS53-203ENST00000401468 ABCB10Q9NRK6 738 aa7.32□□□□□ -1.24
VPS53-203ENST00000401468 SLC2A9Q9NRM0 540 aa7.32□□□□□ -1.24
VPS53-203ENST00000401468 TCF19Q9Y242 345 aa7.32□□□□□ -1.24
VPS53-203ENST00000401468 VSIG4Q9Y279 399 aa7.32□□□□□ -1.24
VPS53-203ENST00000401468 RBM7Q9Y580 266 aaKnown RBP7.32□□□□□ -1.24
VPS53-203ENST00000401468 DBX1A6NMT0 343 aa7.31□□□□□ -1.24
VPS53-203ENST00000401468 M0R1X1 148 aa7.31□□□□□ -1.24
VPS53-203ENST00000401468 PGLYRP1O75594 196 aaPredicted RBP7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms