RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 NINJ1Q92982 152 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 CIB3Q96Q77 187 aaPredicted RBP10.61□□□□□ -0.71
SHMT1-205ENST00000395684 OBP2BQ9NPH6 170 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 METRNQ9UJH8 293 aa10.61□□□□□ -0.71
SHMT1-205ENST00000395684 PRRC2CQ9Y520 2896 aaKnown RBP10.6□□□□□ -0.71
SHMT1-205ENST00000395684 TMEM265A0A087WTH1 108 aa10.6□□□□□ -0.71
SHMT1-205ENST00000395684 TRAV38-1A0A0B4J264 116 aa10.6□□□□□ -0.71
SHMT1-205ENST00000395684 C15orf62A8K5M9 175 aa10.6□□□□□ -0.71
SHMT1-205ENST00000395684 DEFB108AA8MXU0 73 aa10.6□□□□□ -0.71
SHMT1-205ENST00000395684 KLRC4-KLRK1H3BQV0 150 aa10.6□□□□□ -0.71
SHMT1-205ENST00000395684 LYZL6O75951 148 aa10.6□□□□□ -0.71
SHMT1-205ENST00000395684 VENTXO95231 258 aa10.6□□□□□ -0.71
SHMT1-205ENST00000395684 TYMSP04818 313 aa10.6□□□□□ -0.71
SHMT1-205ENST00000395684 IGHV1-2P23083 117 aa10.6□□□□□ -0.71
SHMT1-205ENST00000395684 CDC34P49427 236 aaPredicted RBP10.6□□□□□ -0.71
SHMT1-205ENST00000395684 GNB1P62873 340 aa10.6□□□□□ -0.71
SHMT1-205ENST00000395684 GABRA6Q16445 453 aa10.6□□□□□ -0.71
SHMT1-205ENST00000395684 KLF14Q8TD94 323 aaPredicted RBP10.6□□□□□ -0.71
SHMT1-205ENST00000395684 KLF13Q9Y2Y9 288 aaPredicted RBP10.6□□□□□ -0.71
SHMT1-205ENST00000395684 MARCH11A6NNE9 402 aa10.6□□□□□ -0.71
SHMT1-205ENST00000395684 ZNF705GA8MUZ8 300 aaPredicted RBP10.6□□□□□ -0.71
SHMT1-205ENST00000395684 ST8SIA5O15466 376 aa10.6□□□□□ -0.71
SHMT1-205ENST00000395684 SRP14P37108 136 aaKnown RBP10.6□□□□□ -0.71
SHMT1-205ENST00000395684 MPLP40238 635 aa10.6□□□□□ -0.71
SHMT1-205ENST00000395684 DBX2Q6ZNG2 339 aa10.6□□□□□ -0.71
SHMT1-205ENST00000395684 LINC01551Q86U37 167 aa10.6□□□□□ -0.71
SHMT1-205ENST00000395684 OR13A1Q8NGR1 328 aa10.6□□□□□ -0.71
SHMT1-205ENST00000395684 DERL1Q9BUN8 251 aa10.6□□□□□ -0.71
SHMT1-205ENST00000395684 QTRT1Q9BXR0 403 aaKnown RBP10.6□□□□□ -0.71
SHMT1-205ENST00000395684 CUL9Q8IWT3 2517 aa10.59□□□□□ -0.71
SHMT1-205ENST00000395684 TMEM210A6NLX4 147 aa10.59□□□□□ -0.71
SHMT1-205ENST00000395684 ATP5G3P48201 142 aa10.59□□□□□ -0.71
SHMT1-205ENST00000395684 UBE2G2P60604 165 aa10.59□□□□□ -0.71
SHMT1-205ENST00000395684 UBE2NP61088 152 aaKnown RBP10.59□□□□□ -0.71
SHMT1-205ENST00000395684 Q3ZCU0 254 aa10.59□□□□□ -0.71
SHMT1-205ENST00000395684 FIP1L1Q6UN15 594 aaKnown RBP10.59□□□□□ -0.71
SHMT1-205ENST00000395684 DMRTC2Q8IXT2 367 aaPredicted RBP10.59□□□□□ -0.71
SHMT1-205ENST00000395684 CISD2Q8N5K1 135 aaKnown RBP10.59□□□□□ -0.71
SHMT1-205ENST00000395684 DIRC2Q96SL1 478 aa10.59□□□□□ -0.71
SHMT1-205ENST00000395684 C21orf140B9A014 251 aa10.59□□□□□ -0.71
SHMT1-205ENST00000395684 C17orf112F2Z3M2 114 aa10.59□□□□□ -0.71
SHMT1-205ENST00000395684 OR9G9P0C7N8 305 aa10.59□□□□□ -0.71
SHMT1-205ENST00000395684 NDUFB7P17568 137 aa10.59□□□□□ -0.71
SHMT1-205ENST00000395684 ACOT6Q3I5F7 207 aaPredicted RBP10.59□□□□□ -0.71
SHMT1-205ENST00000395684 FAM78BQ5VT40 261 aa10.59□□□□□ -0.71
SHMT1-205ENST00000395684 PRAMEF6Q5VXH4 476 aa10.59□□□□□ -0.71
SHMT1-205ENST00000395684 ACP7Q6ZNF0 438 aa10.59□□□□□ -0.71
SHMT1-205ENST00000395684 MISP3Q96FF7 219 aa10.59□□□□□ -0.71
SHMT1-205ENST00000395684 DCTN5Q9BTE1 182 aa10.59□□□□□ -0.71
SHMT1-205ENST00000395684 PSG11Q9UQ72 335 aa10.59□□□□□ -0.71
SHMT1-205ENST00000395684 PGPEP1LA6NFU8 196 aa10.58□□□□□ -0.72
SHMT1-205ENST00000395684 PROP1O75360 226 aa10.58□□□□□ -0.72
SHMT1-205ENST00000395684 WISP2O76076 250 aa10.58□□□□□ -0.72
SHMT1-205ENST00000395684 NDUFB4O95168 129 aa10.58□□□□□ -0.72
SHMT1-205ENST00000395684 GCGP01275 180 aa10.58□□□□□ -0.72
SHMT1-205ENST00000395684 IL3RAP26951 378 aa10.58□□□□□ -0.72
SHMT1-205ENST00000395684 CD1BP29016 333 aa10.58□□□□□ -0.72
SHMT1-205ENST00000395684 FOXF2Q12947 444 aa10.58□□□□□ -0.72
SHMT1-205ENST00000395684 C1orf210Q8IVY1 113 aa10.58□□□□□ -0.72
SHMT1-205ENST00000395684 GCNT2Q8N0V5 402 aa10.58□□□□□ -0.72
SHMT1-205ENST00000395684 ZNF114Q8NC26 417 aa10.58□□□□□ -0.72
SHMT1-205ENST00000395684 TAAR6Q96RI8 345 aa10.58□□□□□ -0.72
SHMT1-205ENST00000395684 WDR83OSQ9Y284 106 aa10.58□□□□□ -0.72
SHMT1-205ENST00000395684 KNTC1P50748 2209 aa10.58□□□□□ -0.72
SHMT1-205ENST00000395684 TRGV5A0A0B4J1U4 118 aa10.58□□□□□ -0.72
SHMT1-205ENST00000395684 IFNL4K9M1U5 179 aa10.58□□□□□ -0.72
SHMT1-205ENST00000395684 SLC31A2O15432 143 aa10.58□□□□□ -0.72
SHMT1-205ENST00000395684 SNRPCP09234 159 aaKnown RBP10.58□□□□□ -0.72
SHMT1-205ENST00000395684 CD82P27701 267 aa10.58□□□□□ -0.72
SHMT1-205ENST00000395684 EDDM3BP56851 147 aa10.58□□□□□ -0.72
SHMT1-205ENST00000395684 SSTP61278 116 aa10.58□□□□□ -0.72
SHMT1-205ENST00000395684 CST9LP1Q5W188 147 aa10.58□□□□□ -0.72
SHMT1-205ENST00000395684 WDR82Q6UXN9 313 aa10.58□□□□□ -0.72
SHMT1-205ENST00000395684 WFIKKN1Q96NZ8 548 aa10.58□□□□□ -0.72
SHMT1-205ENST00000395684 C1QTNF9P0C862 333 aa10.57□□□□□ -0.72
SHMT1-205ENST00000395684 KCNIP4Q6PIL6 250 aa10.57□□□□□ -0.72
SHMT1-205ENST00000395684 TCTEX1D1Q8N7M0 179 aa10.57□□□□□ -0.72
SHMT1-205ENST00000395684 PLPPR2Q96GM1 343 aa10.57□□□□□ -0.72
SHMT1-205ENST00000395684 PATZ1Q9HBE1 687 aaKnown RBP10.57□□□□□ -0.72
SHMT1-205ENST00000395684 GPR179Q6PRD1 2367 aa10.57□□□□□ -0.72
SHMT1-205ENST00000395684 TMPRSS2O15393 492 aa10.57□□□□□ -0.72
SHMT1-205ENST00000395684 PDE6DO43924 150 aa10.57□□□□□ -0.72
SHMT1-205ENST00000395684 RPL15P61313 204 aaKnown RBP10.57□□□□□ -0.72
SHMT1-205ENST00000395684 LCN2P80188 198 aa10.57□□□□□ -0.72
SHMT1-205ENST00000395684 TGFBR3Q03167 851 aa10.57□□□□□ -0.72
SHMT1-205ENST00000395684 SSX2Q16385 188 aa10.57□□□□□ -0.72
SHMT1-205ENST00000395684 LTC4SQ16873 150 aa10.57□□□□□ -0.72
SHMT1-205ENST00000395684 TMEM144Q7Z5S9 345 aa10.57□□□□□ -0.72
SHMT1-205ENST00000395684 R3HDM4Q96D70 268 aa10.57□□□□□ -0.72
SHMT1-205ENST00000395684 NOL4LQ96MY1 436 aaPredicted RBP10.57□□□□□ -0.72
SHMT1-205ENST00000395684 HSD17B10Q99714 261 aaKnown RBP10.57□□□□□ -0.72
SHMT1-205ENST00000395684 FZR1Q9UM11 496 aa10.57□□□□□ -0.72
SHMT1-205ENST00000395684 WASF3Q9UPY6 502 aa10.57□□□□□ -0.72
SHMT1-205ENST00000395684 PRR14LQ5THK1 2151 aa10.56□□□□□ -0.72
SHMT1-205ENST00000395684 RBFOX2O43251 390 aaKnown RBP eCLIP10.56□□□□□ -0.72
SHMT1-205ENST00000395684 AGFG2O95081 481 aa10.56□□□□□ -0.72
SHMT1-205ENST00000395684 CNN1P51911 297 aaKnown RBP10.56□□□□□ -0.72
SHMT1-205ENST00000395684 TAS2R60P59551 318 aa10.56□□□□□ -0.72
SHMT1-205ENST00000395684 ATP1A1-AS1Q5TC04 95 aa10.56□□□□□ -0.72
SHMT1-205ENST00000395684 PRR7Q8TB68 274 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms