RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 TREML4Q6UXN2 200 aa17.09■□□□□ 0.33
CLN3-207ENST00000395653 OR6F1Q8NGZ6 308 aa17.09■□□□□ 0.33
CLN3-207ENST00000395653 BORCS5Q969J3 196 aa17.09■□□□□ 0.33
CLN3-207ENST00000395653 MOB3AQ96BX8 217 aa17.09■□□□□ 0.33
CLN3-207ENST00000395653 TAS2R8Q9NYW2 309 aa17.09■□□□□ 0.33
CLN3-207ENST00000395653 KLK11Q9UBX7 282 aa17.09■□□□□ 0.33
CLN3-207ENST00000395653 MTFP1Q9UDX5 166 aa17.09■□□□□ 0.33
CLN3-207ENST00000395653 ADARB2-AS1A8MUL3 147 aa17.08■□□□□ 0.32
CLN3-207ENST00000395653 SHOXO15266 292 aa17.08■□□□□ 0.32
CLN3-207ENST00000395653 SLC25A17O43808 307 aa17.08■□□□□ 0.32
CLN3-207ENST00000395653 CRYZL1O95825 349 aa17.08■□□□□ 0.32
CLN3-207ENST00000395653 TSPAN15O95858 294 aa17.08■□□□□ 0.32
CLN3-207ENST00000395653 ACTBL2Q562R1 376 aa17.08■□□□□ 0.32
CLN3-207ENST00000395653 RNASE12Q5GAN4 147 aaKnown RBP17.08■□□□□ 0.32
CLN3-207ENST00000395653 PYHIN1Q6K0P9 492 aa17.08■□□□□ 0.32
CLN3-207ENST00000395653 TMEM17Q86X19 198 aa17.08■□□□□ 0.32
CLN3-207ENST00000395653 MFSD4AQ8N468 514 aa17.08■□□□□ 0.32
CLN3-207ENST00000395653 OSR1Q8TAX0 266 aaPredicted RBP17.08■□□□□ 0.32
CLN3-207ENST00000395653 FCAMRQ8WWV6 532 aa17.08■□□□□ 0.32
CLN3-207ENST00000395653 DCUN1D5Q9BTE7 237 aa17.08■□□□□ 0.32
CLN3-207ENST00000395653 MMP27Q9H306 513 aa17.08■□□□□ 0.32
CLN3-207ENST00000395653 TSSC4Q9Y5U2 329 aaPredicted RBP17.08■□□□□ 0.32
CLN3-207ENST00000395653 TCRBV4S1A1TA0A5B7 111 aa17.07■□□□□ 0.32
CLN3-207ENST00000395653 GABARAPH6UMI1 98 aa17.07■□□□□ 0.32
CLN3-207ENST00000395653 ATP6V0E1O15342 81 aa17.07■□□□□ 0.32
CLN3-207ENST00000395653 VDAC1P21796 283 aa17.07■□□□□ 0.32
CLN3-207ENST00000395653 CFHR3Q02985 330 aa17.07■□□□□ 0.32
CLN3-207ENST00000395653 NSUN5P1Q3KNT7 163 aa17.07■□□□□ 0.32
CLN3-207ENST00000395653 VAX1Q5SQQ9 334 aa17.07■□□□□ 0.32
CLN3-207ENST00000395653 TCTEX1D2Q8WW35 142 aa17.07■□□□□ 0.32
CLN3-207ENST00000395653 PARP11Q9NR21 331 aa17.07■□□□□ 0.32
CLN3-207ENST00000395653 NBEAL1Q6ZS30 2694 aa17.07■□□□□ 0.32
CLN3-207ENST00000395653 FCN1O00602 326 aa17.06■□□□□ 0.32
CLN3-207ENST00000395653 CTDSPLO15194 276 aa17.06■□□□□ 0.32
CLN3-207ENST00000395653 FCGR3BO75015 233 aa17.06■□□□□ 0.32
CLN3-207ENST00000395653 CRYGBP07316 175 aa17.06■□□□□ 0.32
CLN3-207ENST00000395653 CX3CL1P78423 397 aa17.06■□□□□ 0.32
CLN3-207ENST00000395653 NDPQ00604 133 aa17.06■□□□□ 0.32
CLN3-207ENST00000395653 IL18Q14116 193 aa17.06■□□□□ 0.32
CLN3-207ENST00000395653 TEX38Q6PEX7 206 aa17.06■□□□□ 0.32
CLN3-207ENST00000395653 ZNF562Q6V9R5 426 aa17.06■□□□□ 0.32
CLN3-207ENST00000395653 ZNF818PQ6ZRF7 136 aa17.06■□□□□ 0.32
CLN3-207ENST00000395653 PPP1R27Q86WC6 154 aa17.06■□□□□ 0.32
CLN3-207ENST00000395653 A3GALT2U3KPV4 340 aa17.06■□□□□ 0.32
CLN3-207ENST00000395653 SRRM4A7MD48 611 aaKnown RBP17.05■□□□□ 0.32
CLN3-207ENST00000395653 CA2P00918 260 aa17.05■□□□□ 0.32
CLN3-207ENST00000395653 TBPP20226 339 aa17.05■□□□□ 0.32
CLN3-207ENST00000395653 GNRHRP30968 328 aa17.05■□□□□ 0.32
CLN3-207ENST00000395653 CRIP2P52943 208 aaPredicted RBP17.05■□□□□ 0.32
CLN3-207ENST00000395653 TSPAN5P62079 268 aa17.05■□□□□ 0.32
CLN3-207ENST00000395653 SSBP1Q04837 148 aaKnown RBP17.05■□□□□ 0.32
CLN3-207ENST00000395653 VMA21Q3ZAQ7 101 aa17.05■□□□□ 0.32
CLN3-207ENST00000395653 OR4S2Q8NH73 311 aa17.05■□□□□ 0.32
CLN3-207ENST00000395653 SMIM4Q8WVI0 70 aa17.05■□□□□ 0.32
CLN3-207ENST00000395653 FXYD6Q9H0Q3 95 aa17.05■□□□□ 0.32
CLN3-207ENST00000395653 TPSG1Q9NRR2 321 aa17.05■□□□□ 0.32
CLN3-207ENST00000395653 TNFSF12O43508 249 aa17.04■□□□□ 0.32
CLN3-207ENST00000395653 TNFSF8P32971 234 aa17.04■□□□□ 0.32
CLN3-207ENST00000395653 KIR2DS2P43631 304 aa17.04■□□□□ 0.32
CLN3-207ENST00000395653 UBE2KP61086 200 aa17.04■□□□□ 0.32
CLN3-207ENST00000395653 DGCR2P98153 550 aa17.04■□□□□ 0.32
CLN3-207ENST00000395653 CATR1Q13166 79 aa17.04■□□□□ 0.32
CLN3-207ENST00000395653 OR2B11Q5JQS5 317 aa17.04■□□□□ 0.32
CLN3-207ENST00000395653 CLCC1Q96S66 551 aa17.04■□□□□ 0.32
CLN3-207ENST00000395653 GPHA2Q96T91 129 aa17.04■□□□□ 0.32
CLN3-207ENST00000395653 WNK1Q9H4A3 2382 aa17.04■□□□□ 0.32
CLN3-207ENST00000395653 TRAV41A0A0B4J266 112 aa17.04■□□□□ 0.32
CLN3-207ENST00000395653 IGHG4P01861 327 aa17.04■□□□□ 0.32
CLN3-207ENST00000395653 ELANEP08246 267 aa17.04■□□□□ 0.32
CLN3-207ENST00000395653 PPIFP30405 207 aaKnown RBP17.04■□□□□ 0.32
CLN3-207ENST00000395653 BRWD1-AS2P59051 145 aa17.04■□□□□ 0.32
CLN3-207ENST00000395653 FOXE3Q13461 319 aa17.04■□□□□ 0.32
CLN3-207ENST00000395653 RNASE10Q5GAN6 216 aaKnown RBP17.04■□□□□ 0.32
CLN3-207ENST00000395653 KHDC1LQ5JSQ8 128 aa17.04■□□□□ 0.32
CLN3-207ENST00000395653 RNF152Q8N8N0 203 aa17.04■□□□□ 0.32
CLN3-207ENST00000395653 TEX45Q8NA69 505 aa17.04■□□□□ 0.32
CLN3-207ENST00000395653 TMEM229BQ8NBD8 167 aa17.04■□□□□ 0.32
CLN3-207ENST00000395653 OR4F17Q8NGA8 305 aa17.04■□□□□ 0.32
CLN3-207ENST00000395653 OR4F4Q96R69 305 aa17.04■□□□□ 0.32
CLN3-207ENST00000395653 ZFP57Q9NU63 452 aa17.04■□□□□ 0.32
CLN3-207ENST00000395653 NDUFA13Q9P0J0 144 aa17.04■□□□□ 0.32
CLN3-207ENST00000395653 FBXO7Q9Y3I1 522 aa17.04■□□□□ 0.32
CLN3-207ENST00000395653 WSB1Q9Y6I7 421 aa17.04■□□□□ 0.32
CLN3-207ENST00000395653 M0QYG6 137 aa17.03■□□□□ 0.32
CLN3-207ENST00000395653 CD3DP04234 171 aa17.03■□□□□ 0.32
CLN3-207ENST00000395653 TAS2R19P59542 299 aa17.03■□□□□ 0.32
CLN3-207ENST00000395653 ARRDC1Q8N5I2 433 aa17.03■□□□□ 0.32
CLN3-207ENST00000395653 R3HDM4Q96D70 268 aa17.03■□□□□ 0.32
CLN3-207ENST00000395653 SOSTQ9BQB4 213 aa17.03■□□□□ 0.32
CLN3-207ENST00000395653 A0A1W2PRX2 142 aa17.02■□□□□ 0.31
CLN3-207ENST00000395653 G3V318 75 aa17.02■□□□□ 0.31
CLN3-207ENST00000395653 RBFOX2O43251 390 aaKnown RBP eCLIP17.02■□□□□ 0.31
CLN3-207ENST00000395653 CD74P04233 296 aa17.02■□□□□ 0.31
CLN3-207ENST00000395653 RPL23AP62750 156 aaKnown RBP17.02■□□□□ 0.31
CLN3-207ENST00000395653 CXorf66Q5JRM2 361 aaPredicted RBP17.02■□□□□ 0.31
CLN3-207ENST00000395653 LPCAT3Q6P1A2 487 aa17.02■□□□□ 0.31
CLN3-207ENST00000395653 CMTM1Q8IZ96 169 aa17.02■□□□□ 0.31
CLN3-207ENST00000395653 TCTEX1D1Q8N7M0 179 aa17.02■□□□□ 0.31
CLN3-207ENST00000395653 FAM110DQ8TAY7 271 aaPredicted RBP17.02■□□□□ 0.31
CLN3-207ENST00000395653 ABHD5Q8WTS1 349 aa17.02■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms