RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 RTL8BQ17RB0 113 aa12.66□□□□□ -0.38
LSM1-201ENST00000311351 TMEM177Q53S58 311 aa12.66□□□□□ -0.38
LSM1-201ENST00000311351 ACTBL2Q562R1 376 aa12.66□□□□□ -0.38
LSM1-201ENST00000311351 CNIH2Q6PI25 160 aa12.66□□□□□ -0.38
LSM1-201ENST00000311351 CROCCP3Q8IVE0 287 aa12.66□□□□□ -0.38
LSM1-201ENST00000311351 GVQW1Q8N7I0 195 aa12.66□□□□□ -0.38
LSM1-201ENST00000311351 TCTEX1D1Q8N7M0 179 aa12.66□□□□□ -0.38
LSM1-201ENST00000311351 OR5M8Q8NGP6 311 aa12.66□□□□□ -0.38
LSM1-201ENST00000311351 ANXA10Q9UJ72 324 aa12.66□□□□□ -0.38
LSM1-201ENST00000311351 SPATA2Q9UM82 520 aa12.66□□□□□ -0.38
LSM1-201ENST00000311351 OR2W1Q9Y3N9 320 aa12.66□□□□□ -0.38
LSM1-201ENST00000311351 SRRM4A7MD48 611 aaKnown RBP12.65□□□□□ -0.38
LSM1-201ENST00000311351 SHOXO15266 292 aa12.65□□□□□ -0.38
LSM1-201ENST00000311351 CRYZL1O95825 349 aa12.65□□□□□ -0.38
LSM1-201ENST00000311351 CRYGBP07316 175 aa12.65□□□□□ -0.38
LSM1-201ENST00000311351 CTXN2P0C2S0 81 aa12.65□□□□□ -0.38
LSM1-201ENST00000311351 RPS19P39019 145 aaKnown RBP12.65□□□□□ -0.38
LSM1-201ENST00000311351 CBX3Q13185 183 aa12.65□□□□□ -0.38
LSM1-201ENST00000311351 FXYD3Q14802 87 aa12.65□□□□□ -0.38
LSM1-201ENST00000311351 OR2B11Q5JQS5 317 aa12.65□□□□□ -0.38
LSM1-201ENST00000311351 ZNF645Q8N7E2 425 aa12.65□□□□□ -0.38
LSM1-201ENST00000311351 MS4A10Q96PG2 267 aa12.65□□□□□ -0.38
LSM1-201ENST00000311351 AUNIPQ9H7T9 357 aa12.65□□□□□ -0.38
LSM1-201ENST00000311351 IGLV2-14P01704 120 aa12.64□□□□□ -0.39
LSM1-201ENST00000311351 IGHV3-11P01762 117 aa12.64□□□□□ -0.39
LSM1-201ENST00000311351 HLA-DQB1P01920 261 aa12.64□□□□□ -0.39
LSM1-201ENST00000311351 LGALS7P47929 136 aa12.64□□□□□ -0.39
LSM1-201ENST00000311351 RUNX1Q01196 453 aa12.64□□□□□ -0.39
LSM1-201ENST00000311351 TAGLNQ01995 201 aaKnown RBP12.64□□□□□ -0.39
LSM1-201ENST00000311351 ZNF616Q08AN1 781 aa12.64□□□□□ -0.39
LSM1-201ENST00000311351 TMEM267Q0VDI3 215 aaPredicted RBP12.64□□□□□ -0.39
LSM1-201ENST00000311351 AKIRIN2Q53H80 203 aa12.64□□□□□ -0.39
LSM1-201ENST00000311351 IDO2Q6ZQW0 420 aa12.64□□□□□ -0.39
LSM1-201ENST00000311351 KCTD9Q7L273 389 aa12.64□□□□□ -0.39
LSM1-201ENST00000311351 BEST4Q8NFU0 473 aa12.64□□□□□ -0.39
LSM1-201ENST00000311351 OR1N2Q8NGR9 330 aa12.64□□□□□ -0.39
LSM1-201ENST00000311351 ADTRPQ96IZ2 230 aa12.64□□□□□ -0.39
LSM1-201ENST00000311351 RBMX2Q9Y388 322 aaKnown RBP12.64□□□□□ -0.39
LSM1-201ENST00000311351 A0A0A6YYH2 397 aa12.63□□□□□ -0.39
LSM1-201ENST00000311351 MEIS3P1A6NDR6 274 aa12.63□□□□□ -0.39
LSM1-201ENST00000311351 A6NJ64 397 aa12.63□□□□□ -0.39
LSM1-201ENST00000311351 SEC14L6B5MCN3 397 aa12.63□□□□□ -0.39
LSM1-201ENST00000311351 TUSC2O75896 110 aa12.63□□□□□ -0.39
LSM1-201ENST00000311351 CNIH1O95406 144 aa12.63□□□□□ -0.39
LSM1-201ENST00000311351 RRASP10301 218 aa12.63□□□□□ -0.39
LSM1-201ENST00000311351 TPPP2P59282 170 aa12.63□□□□□ -0.39
LSM1-201ENST00000311351 ARPC4P59998 168 aa12.63□□□□□ -0.39
LSM1-201ENST00000311351 RPL30P62888 115 aaKnown RBP12.63□□□□□ -0.39
LSM1-201ENST00000311351 MRGPRG-AS1Q2M3A8 158 aa12.63□□□□□ -0.39
LSM1-201ENST00000311351 MRPS26Q9BYN8 205 aaKnown RBP12.63□□□□□ -0.39
LSM1-201ENST00000311351 DIABLOQ9NR28 239 aa12.63□□□□□ -0.39
LSM1-201ENST00000311351 FCGR3BO75015 233 aa12.62□□□□□ -0.39
LSM1-201ENST00000311351 LGALS1P09382 135 aaKnown RBP12.62□□□□□ -0.39
LSM1-201ENST00000311351 OR8U8P0C7N1 319 aa12.62□□□□□ -0.39
LSM1-201ENST00000311351 SLURP1P55000 103 aa12.62□□□□□ -0.39
LSM1-201ENST00000311351 NCS1P62166 190 aa12.62□□□□□ -0.39
LSM1-201ENST00000311351 C9orf66Q5T8R8 295 aa12.62□□□□□ -0.39
LSM1-201ENST00000311351 PYHIN1Q6K0P9 492 aa12.62□□□□□ -0.39
LSM1-201ENST00000311351 HOGA1Q86XE5 327 aa12.62□□□□□ -0.39
LSM1-201ENST00000311351 SAMD12Q8N8I0 201 aa12.62□□□□□ -0.39
LSM1-201ENST00000311351 SNAPC3Q92966 411 aa12.62□□□□□ -0.39
LSM1-201ENST00000311351 GPHA2Q96T91 129 aa12.62□□□□□ -0.39
LSM1-201ENST00000311351 FUNDC2Q9BWH2 189 aa12.62□□□□□ -0.39
LSM1-201ENST00000311351 IGHV4OR15-8A0A075B7B6 117 aa12.61□□□□□ -0.39
LSM1-201ENST00000311351 A0A087WW49 117 aa12.61□□□□□ -0.39
LSM1-201ENST00000311351 TRGV3P03979 118 aa12.61□□□□□ -0.39
LSM1-201ENST00000311351 SAA1P0DJI8 122 aaPredicted RBP12.61□□□□□ -0.39
LSM1-201ENST00000311351 APELAP0DMC3 54 aa12.61□□□□□ -0.39
LSM1-201ENST00000311351 AADACP22760 399 aa12.61□□□□□ -0.39
LSM1-201ENST00000311351 UBE2KP61086 200 aa12.61□□□□□ -0.39
LSM1-201ENST00000311351 DEFA5Q01523 94 aa12.61□□□□□ -0.39
LSM1-201ENST00000311351 VMA21Q3ZAQ7 101 aa12.61□□□□□ -0.39
LSM1-201ENST00000311351 UBE2NLQ5JXB2 153 aa12.61□□□□□ -0.39
LSM1-201ENST00000311351 POC5Q8NA72 575 aa12.61□□□□□ -0.39
LSM1-201ENST00000311351 OR5T1Q8NG75 326 aa12.61□□□□□ -0.39
LSM1-201ENST00000311351 OR13F1Q8NGS4 319 aa12.61□□□□□ -0.39
LSM1-201ENST00000311351 DCUN1D4Q92564 292 aa12.61□□□□□ -0.39
LSM1-201ENST00000311351 ZNF355PQ9NSJ1 428 aa12.61□□□□□ -0.39
LSM1-201ENST00000311351 XRCC3O43542 346 aa12.6□□□□□ -0.39
LSM1-201ENST00000311351 SMIM18P0DKX4 95 aa12.6□□□□□ -0.39
LSM1-201ENST00000311351 FCGR2CP31995 323 aa12.6□□□□□ -0.39
LSM1-201ENST00000311351 VBP1P61758 197 aa12.6□□□□□ -0.39
LSM1-201ENST00000311351 DGCR2P98153 550 aa12.6□□□□□ -0.39
LSM1-201ENST00000311351 EIF4EBP1Q13541 118 aaPredicted RBP12.6□□□□□ -0.39
LSM1-201ENST00000311351 TNXAQ16473 311 aa12.6□□□□□ -0.39
LSM1-201ENST00000311351 PRSS8Q16651 343 aa12.6□□□□□ -0.39
LSM1-201ENST00000311351 DEFB121Q5J5C9 76 aa12.6□□□□□ -0.39
LSM1-201ENST00000311351 OVCH2Q7RTZ1 564 aa12.6□□□□□ -0.39
LSM1-201ENST00000311351 OSR1Q8TAX0 266 aaPredicted RBP12.6□□□□□ -0.39
LSM1-201ENST00000311351 SECTM1Q8WVN6 248 aa12.6□□□□□ -0.39
LSM1-201ENST00000311351 TCTEX1D2Q8WW35 142 aa12.6□□□□□ -0.39
LSM1-201ENST00000311351 DCUN1D5Q9BTE7 237 aa12.6□□□□□ -0.39
LSM1-201ENST00000311351 SLA2Q9H6Q3 261 aa12.6□□□□□ -0.39
LSM1-201ENST00000311351 TAS2R8Q9NYW2 309 aa12.6□□□□□ -0.39
LSM1-201ENST00000311351 SCOCQ9UIL1 159 aa12.6□□□□□ -0.39
LSM1-201ENST00000311351 PRELID3BQ9Y3B1 194 aa12.6□□□□□ -0.39
LSM1-201ENST00000311351 DNAH9Q9NYC9 4486 aa12.6□□□□□ -0.39
LSM1-201ENST00000311351 LINC01619G3V211 115 aa12.59□□□□□ -0.39
LSM1-201ENST00000311351 TNFSF12O43508 249 aa12.59□□□□□ -0.39
LSM1-201ENST00000311351 SLC22A5O76082 557 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms