RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 NKX2-1P43699 371 aaPredicted RBP11.49□□□□□ -0.57
SS18-201ENST00000269137 DSCR9P59020 149 aa11.49□□□□□ -0.57
SS18-201ENST00000269137 TAGLNQ01995 201 aaKnown RBP11.49□□□□□ -0.57
SS18-201ENST00000269137 TMUB2Q71RG4 321 aa11.49□□□□□ -0.57
SS18-201ENST00000269137 OR8H3Q8N146 312 aa11.49□□□□□ -0.57
SS18-201ENST00000269137 KCNRGQ8N5I3 272 aa11.49□□□□□ -0.57
SS18-201ENST00000269137 OR4S2Q8NH73 311 aa11.49□□□□□ -0.57
SS18-201ENST00000269137 DCUN1D4Q92564 292 aa11.49□□□□□ -0.57
SS18-201ENST00000269137 PSMG3-AS1Q96PY0 264 aa11.49□□□□□ -0.57
SS18-201ENST00000269137 UNKLQ9H9P5 680 aaKnown RBP11.49□□□□□ -0.57
SS18-201ENST00000269137 CACNG5Q9UF02 275 aa11.49□□□□□ -0.57
SS18-201ENST00000269137 UBQLN2Q9UHD9 624 aa11.49□□□□□ -0.57
SS18-201ENST00000269137 ABCA12Q86UK0 2595 aa11.49□□□□□ -0.57
SS18-201ENST00000269137 ANKRD17O75179 2603 aaKnown RBP11.49□□□□□ -0.57
SS18-201ENST00000269137 LINC00862A6NCI5 91 aa11.49□□□□□ -0.57
SS18-201ENST00000269137 RNF222A6NCQ9 220 aa11.49□□□□□ -0.57
SS18-201ENST00000269137 SCGB1D2O95969 90 aa11.49□□□□□ -0.57
SS18-201ENST00000269137 CFDP00746 253 aaPredicted RBP11.49□□□□□ -0.57
SS18-201ENST00000269137 KRASP01116 189 aa11.49□□□□□ -0.57
SS18-201ENST00000269137 G6PCP35575 357 aa11.49□□□□□ -0.57
SS18-201ENST00000269137 ARF6P62330 175 aa11.49□□□□□ -0.57
SS18-201ENST00000269137 CXorf66Q5JRM2 361 aaPredicted RBP11.49□□□□□ -0.57
SS18-201ENST00000269137 FOXRED2Q8IWF2 684 aa11.49□□□□□ -0.57
SS18-201ENST00000269137 PERPQ96FX8 193 aa11.49□□□□□ -0.57
SS18-201ENST00000269137 POLR3KQ9Y2Y1 108 aaPredicted RBP11.49□□□□□ -0.57
SS18-201ENST00000269137 LSM5Q9Y4Y9 91 aaKnown RBP11.49□□□□□ -0.57
SS18-201ENST00000269137 KPTNQ9Y664 436 aa11.49□□□□□ -0.57
SS18-201ENST00000269137 POLQO75417 2590 aa11.48□□□□□ -0.57
SS18-201ENST00000269137 E5RGE8 158 aa11.48□□□□□ -0.57
SS18-201ENST00000269137 FOXH1O75593 365 aa11.48□□□□□ -0.57
SS18-201ENST00000269137 EPHA1P21709 976 aa11.48□□□□□ -0.57
SS18-201ENST00000269137 ARHGDIBP52566 201 aa11.48□□□□□ -0.57
SS18-201ENST00000269137 HLA-DRB5Q30154 266 aa11.48□□□□□ -0.57
SS18-201ENST00000269137 DHRS7BQ6IAN0 325 aaPredicted RBP11.48□□□□□ -0.57
SS18-201ENST00000269137 OR13D1Q8NGV5 346 aa11.48□□□□□ -0.57
SS18-201ENST00000269137 R3HDM4Q96D70 268 aa11.48□□□□□ -0.57
SS18-201ENST00000269137 AQP10Q96PS8 301 aa11.48□□□□□ -0.57
SS18-201ENST00000269137 ARL6Q9H0F7 186 aa11.48□□□□□ -0.57
SS18-201ENST00000269137 RCL1Q9Y2P8 373 aaKnown RBP11.48□□□□□ -0.57
SS18-201ENST00000269137 NSG2Q9Y328 171 aa11.48□□□□□ -0.57
SS18-201ENST00000269137 IGHV2-70DA0A0C4DH43 119 aa11.47□□□□□ -0.57
SS18-201ENST00000269137 MARCH11A6NNE9 402 aa11.47□□□□□ -0.57
SS18-201ENST00000269137 FAM90A9PA6NNJ1 464 aa11.47□□□□□ -0.57
SS18-201ENST00000269137 RRASP10301 218 aa11.47□□□□□ -0.57
SS18-201ENST00000269137 NQO2P16083 231 aa11.47□□□□□ -0.57
SS18-201ENST00000269137 NUP62P37198 522 aaPredicted RBP11.47□□□□□ -0.57
SS18-201ENST00000269137 RTL8BQ17RB0 113 aa11.47□□□□□ -0.57
SS18-201ENST00000269137 IZUMO4Q1ZYL8 232 aa11.47□□□□□ -0.57
SS18-201ENST00000269137 CLLU1Q5K131 121 aa11.47□□□□□ -0.57
SS18-201ENST00000269137 H2BFWTQ7Z2G1 175 aa11.47□□□□□ -0.57
SS18-201ENST00000269137 DMBX1Q8NFW5 382 aa11.47□□□□□ -0.57
SS18-201ENST00000269137 OR11H6Q8NGC7 330 aa11.47□□□□□ -0.57
SS18-201ENST00000269137 OR5AN1Q8NGI8 311 aa11.47□□□□□ -0.57
SS18-201ENST00000269137 MARVELD3Q96A59 401 aa11.47□□□□□ -0.57
SS18-201ENST00000269137 PCGF1Q9BSM1 259 aa11.47□□□□□ -0.57
SS18-201ENST00000269137 MRPL20Q9BYC9 149 aaKnown RBP11.47□□□□□ -0.57
SS18-201ENST00000269137 C11orf1Q9H5F2 150 aa11.47□□□□□ -0.57
SS18-201ENST00000269137 NAV2Q8IVL1 2488 aa11.47□□□□□ -0.57
SS18-201ENST00000269137 RPS10-NUDT3A0A1W2PQS6 291 aa11.46□□□□□ -0.57
SS18-201ENST00000269137 FAM90A26D6RGX4 464 aa11.46□□□□□ -0.57
SS18-201ENST00000269137 MMP9P14780 707 aa11.46□□□□□ -0.57
SS18-201ENST00000269137 LCN2P80188 198 aa11.46□□□□□ -0.57
SS18-201ENST00000269137 MIDNQ504T8 468 aa11.46□□□□□ -0.57
SS18-201ENST00000269137 CITED4Q96RK1 184 aa11.46□□□□□ -0.57
SS18-201ENST00000269137 NABP2Q9BQ15 211 aa11.46□□□□□ -0.57
SS18-201ENST00000269137 SLC35D1Q9NTN3 355 aa11.46□□□□□ -0.57
SS18-201ENST00000269137 AMMECR1Q9Y4X0 333 aaPredicted RBP11.46□□□□□ -0.57
SS18-201ENST00000269137 AUP1Q9Y679 476 aa11.46□□□□□ -0.57
SS18-201ENST00000269137 IGHV4-30-2A0A087WSY4 118 aa11.46□□□□□ -0.58
SS18-201ENST00000269137 IGHV4-61A0A0C4DH41 118 aa11.46□□□□□ -0.58
SS18-201ENST00000269137 LEUTXA8MZ59 168 aa11.46□□□□□ -0.58
SS18-201ENST00000269137 H0YJW9 148 aa11.46□□□□□ -0.58
SS18-201ENST00000269137 BUB1B-PAK6H3BSN5 160 aa11.46□□□□□ -0.58
SS18-201ENST00000269137 CRYZL1O95825 349 aa11.46□□□□□ -0.58
SS18-201ENST00000269137 COX7A1P24310 79 aa11.46□□□□□ -0.58
SS18-201ENST00000269137 P2RY1P47900 373 aa11.46□□□□□ -0.58
SS18-201ENST00000269137 AP2S1P53680 142 aaPredicted RBP11.46□□□□□ -0.58
SS18-201ENST00000269137 DLX1P56177 255 aa11.46□□□□□ -0.58
SS18-201ENST00000269137 KRTAP10-9P60411 292 aa11.46□□□□□ -0.58
SS18-201ENST00000269137 ERVK-16P61578 105 aa11.46□□□□□ -0.58
SS18-201ENST00000269137 POLR2GP62487 172 aaKnown RBP eCLIP11.46□□□□□ -0.58
SS18-201ENST00000269137 POU2AF1Q16633 256 aa11.46□□□□□ -0.58
SS18-201ENST00000269137 TGIF2LXQ8IUE1 241 aa11.46□□□□□ -0.58
SS18-201ENST00000269137 PNKDQ8N490 385 aa11.46□□□□□ -0.58
SS18-201ENST00000269137 OR4P4Q8NGL7 312 aa11.46□□□□□ -0.58
SS18-201ENST00000269137 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.46□□□□□ -0.58
SS18-201ENST00000269137 MSGN1A6NI15 193 aa11.45□□□□□ -0.58
SS18-201ENST00000269137 KCNAB3O43448 404 aa11.45□□□□□ -0.58
SS18-201ENST00000269137 APOA2P02652 100 aa11.45□□□□□ -0.58
SS18-201ENST00000269137 HKR1P10072 659 aa11.45□□□□□ -0.58
SS18-201ENST00000269137 PVALBP20472 110 aaPredicted RBP11.45□□□□□ -0.58
SS18-201ENST00000269137 AARDQ4LEZ3 155 aa11.45□□□□□ -0.58
SS18-201ENST00000269137 GPR157Q5UAW9 335 aa11.45□□□□□ -0.58
SS18-201ENST00000269137 SIRPDQ9H106 197 aa11.45□□□□□ -0.58
SS18-201ENST00000269137 SIRT7Q9NRC8 400 aa11.45□□□□□ -0.58
SS18-201ENST00000269137 MMP26Q9NRE1 261 aa11.45□□□□□ -0.58
SS18-201ENST00000269137 BEX4Q9NWD9 120 aaPredicted RBP11.45□□□□□ -0.58
SS18-201ENST00000269137 LY6LH3BQJ8 138 aa11.44□□□□□ -0.58
SS18-201ENST00000269137 HRASP01112 189 aa11.44□□□□□ -0.58
SS18-201ENST00000269137 RPL12P30050 165 aaKnown RBP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms