RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 REG4Q9BYZ8 158 aa11.14□□□□□ -0.63
CCDC40-209ENST00000573474 C13orf42A0A1B0GVH6 325 aa11.13□□□□□ -0.63
CCDC40-209ENST00000573474 C5orf51A6NDU8 294 aa11.13□□□□□ -0.63
CCDC40-209ENST00000573474 RNF223E7ERA6 249 aa11.13□□□□□ -0.63
CCDC40-209ENST00000573474 BUB1B-PAK6H3BSN5 160 aa11.13□□□□□ -0.63
CCDC40-209ENST00000573474 RBFOX2O43251 390 aaKnown RBP eCLIP11.13□□□□□ -0.63
CCDC40-209ENST00000573474 MSMBP08118 114 aa11.13□□□□□ -0.63
CCDC40-209ENST00000573474 CT45A6P0DMU7 189 aa11.13□□□□□ -0.63
CCDC40-209ENST00000573474 CT45A5P0DMU8 189 aa11.13□□□□□ -0.63
CCDC40-209ENST00000573474 CT45A7P0DMV0 189 aa11.13□□□□□ -0.63
CCDC40-209ENST00000573474 LPAR6P43657 344 aa11.13□□□□□ -0.63
CCDC40-209ENST00000573474 BRWD1-AS2P59051 145 aa11.13□□□□□ -0.63
CCDC40-209ENST00000573474 LINC00205P59089 165 aa11.13□□□□□ -0.63
CCDC40-209ENST00000573474 TAGLNQ01995 201 aaKnown RBP11.13□□□□□ -0.63
CCDC40-209ENST00000573474 PRB3Q04118 309 aaPredicted RBP11.13□□□□□ -0.63
CCDC40-209ENST00000573474 SRSF4Q08170 494 aaKnown RBP11.13□□□□□ -0.63
CCDC40-209ENST00000573474 DCAF12L2Q5VW00 463 aa11.13□□□□□ -0.63
CCDC40-209ENST00000573474 HCP5Q6MZN7 132 aa11.13□□□□□ -0.63
CCDC40-209ENST00000573474 KRTAP1-3Q8IUG1 177 aa11.13□□□□□ -0.63
CCDC40-209ENST00000573474 LINC01356Q8N9X3 169 aa11.13□□□□□ -0.63
CCDC40-209ENST00000573474 DDB2Q92466 427 aa11.13□□□□□ -0.63
CCDC40-209ENST00000573474 Q96MF0 132 aa11.13□□□□□ -0.63
CCDC40-209ENST00000573474 TBX15Q96SF7 602 aa11.13□□□□□ -0.63
CCDC40-209ENST00000573474 PCGF1Q9BSM1 259 aa11.13□□□□□ -0.63
CCDC40-209ENST00000573474 PDCD10Q9BUL8 212 aa11.13□□□□□ -0.63
CCDC40-209ENST00000573474 TMED3Q9Y3Q3 217 aa11.13□□□□□ -0.63
CCDC40-209ENST00000573474 TRAV20A0A0B4J274 112 aa11.12□□□□□ -0.63
CCDC40-209ENST00000573474 ODF3BA8MYP8 253 aa11.12□□□□□ -0.63
CCDC40-209ENST00000573474 FCGR3BO75015 233 aa11.12□□□□□ -0.63
CCDC40-209ENST00000573474 ATG12O94817 140 aa11.12□□□□□ -0.63
CCDC40-209ENST00000573474 ARG1P05089 322 aa11.12□□□□□ -0.63
CCDC40-209ENST00000573474 HNRNPCP07910 306 aaKnown RBP eCLIP11.12□□□□□ -0.63
CCDC40-209ENST00000573474 HOXB4P17483 251 aaPredicted RBP11.12□□□□□ -0.63
CCDC40-209ENST00000573474 CYCSP99999 105 aaKnown RBP11.12□□□□□ -0.63
CCDC40-209ENST00000573474 KLRD1Q13241 179 aa11.12□□□□□ -0.63
CCDC40-209ENST00000573474 OR2B11Q5JQS5 317 aa11.12□□□□□ -0.63
CCDC40-209ENST00000573474 SLC35G3Q8N808 338 aa11.12□□□□□ -0.63
CCDC40-209ENST00000573474 ZNF383Q8NA42 475 aa11.12□□□□□ -0.63
CCDC40-209ENST00000573474 OR4P4Q8NGL7 312 aa11.12□□□□□ -0.63
CCDC40-209ENST00000573474 C2orf50Q96LR7 162 aa11.12□□□□□ -0.63
CCDC40-209ENST00000573474 FOXC2Q99958 501 aa11.12□□□□□ -0.63
CCDC40-209ENST00000573474 ARHGAP32A7KAX9 2087 aa11.12□□□□□ -0.63
CCDC40-209ENST00000573474 LEUTXA8MZ59 168 aa11.11□□□□□ -0.63
CCDC40-209ENST00000573474 RNASEK-C17orf49H0YIS7 233 aa11.11□□□□□ -0.63
CCDC40-209ENST00000573474 LY6LH3BQJ8 138 aa11.11□□□□□ -0.63
CCDC40-209ENST00000573474 RAMP3O60896 148 aa11.11□□□□□ -0.63
CCDC40-209ENST00000573474 HPRT1P00492 218 aa11.11□□□□□ -0.63
CCDC40-209ENST00000573474 IGKV1-39P01597 117 aa11.11□□□□□ -0.63
CCDC40-209ENST00000573474 GAPDHP04406 335 aaKnown RBP11.11□□□□□ -0.63
CCDC40-209ENST00000573474 IGKV1D-39P04432 117 aa11.11□□□□□ -0.63
CCDC40-209ENST00000573474 RRASP10301 218 aa11.11□□□□□ -0.63
CCDC40-209ENST00000573474 VDAC1P21796 283 aa11.11□□□□□ -0.63
CCDC40-209ENST00000573474 GATA3P23771 443 aa11.11□□□□□ -0.63
CCDC40-209ENST00000573474 HTR1DP28221 377 aa11.11□□□□□ -0.63
CCDC40-209ENST00000573474 UBE2E1P51965 193 aa11.11□□□□□ -0.63
CCDC40-209ENST00000573474 ZNF816Q0VGE8 651 aaPredicted RBP11.11□□□□□ -0.63
CCDC40-209ENST00000573474 TGIF2LXQ8IUE1 241 aa11.11□□□□□ -0.63
CCDC40-209ENST00000573474 OR4S2Q8NH73 311 aa11.11□□□□□ -0.63
CCDC40-209ENST00000573474 LSM10Q969L4 123 aaKnown RBP11.11□□□□□ -0.63
CCDC40-209ENST00000573474 SEC22AQ96IW7 307 aa11.11□□□□□ -0.63
CCDC40-209ENST00000573474 OR10C1Q96KK4 312 aa11.11□□□□□ -0.63
CCDC40-209ENST00000573474 NABP2Q9BQ15 211 aa11.11□□□□□ -0.63
CCDC40-209ENST00000573474 MRPL20Q9BYC9 149 aaKnown RBP11.11□□□□□ -0.63
CCDC40-209ENST00000573474 NMES1Q9C002 83 aa11.11□□□□□ -0.63
CCDC40-209ENST00000573474 DPM3Q9P2X0 92 aa11.11□□□□□ -0.63
CCDC40-209ENST00000573474 UNC79Q9P2D8 2635 aa11.1□□□□□ -0.63
CCDC40-209ENST00000573474 NBPF19A0A087WUL8 3843 aa11.1□□□□□ -0.63
CCDC40-209ENST00000573474 MPTX1A8MV57 137 aa11.1□□□□□ -0.63
CCDC40-209ENST00000573474 TXNL1O43396 289 aa11.1□□□□□ -0.63
CCDC40-209ENST00000573474 S1PR2O95136 353 aa11.1□□□□□ -0.63
CCDC40-209ENST00000573474 APOA2P02652 100 aa11.1□□□□□ -0.63
CCDC40-209ENST00000573474 CEACAM3P40198 252 aa11.1□□□□□ -0.63
CCDC40-209ENST00000573474 REG1BP48304 166 aa11.1□□□□□ -0.63
CCDC40-209ENST00000573474 DIAPH2-AS1Q14236 149 aa11.1□□□□□ -0.63
CCDC40-209ENST00000573474 RTL8BQ17RB0 113 aa11.1□□□□□ -0.63
CCDC40-209ENST00000573474 IAH1Q2TAA2 248 aaPredicted RBP11.1□□□□□ -0.63
CCDC40-209ENST00000573474 NMSQ5H8A3 153 aa11.1□□□□□ -0.63
CCDC40-209ENST00000573474 MINOS1Q5TGZ0 78 aa11.1□□□□□ -0.63
CCDC40-209ENST00000573474 OR5AN1Q8NGI8 311 aa11.1□□□□□ -0.63
CCDC40-209ENST00000573474 OR2T35Q8NGX2 323 aa11.1□□□□□ -0.63
CCDC40-209ENST00000573474 LHX4Q969G2 390 aa11.1□□□□□ -0.63
CCDC40-209ENST00000573474 RPEQ96AT9 228 aa11.1□□□□□ -0.63
CCDC40-209ENST00000573474 RRNAD1Q96FB5 475 aaKnown RBP11.1□□□□□ -0.63
CCDC40-209ENST00000573474 SPIN2AQ99865 258 aa11.1□□□□□ -0.63
CCDC40-209ENST00000573474 SPIN2BQ9BPZ2 258 aa11.1□□□□□ -0.63
CCDC40-209ENST00000573474 PLEKHA2Q9HB19 425 aa11.1□□□□□ -0.63
CCDC40-209ENST00000573474 SLC35D1Q9NTN3 355 aa11.1□□□□□ -0.63
CCDC40-209ENST00000573474 COMMD9Q9P000 198 aa11.1□□□□□ -0.63
CCDC40-209ENST00000573474 AUP1Q9Y679 476 aa11.1□□□□□ -0.63
CCDC40-209ENST00000573474 MINOS1-NBL1R4GNA1 71 aa11.1□□□□□ -0.63
CCDC40-209ENST00000573474 H0YJW9 148 aa11.09□□□□□ -0.63
CCDC40-209ENST00000573474 SMLR1H3BR10 107 aa11.09□□□□□ -0.63
CCDC40-209ENST00000573474 BOLA2-SMG1P6H3BVE0 249 aa11.09□□□□□ -0.63
CCDC40-209ENST00000573474 IGKV1-5P01602 117 aa11.09□□□□□ -0.63
CCDC40-209ENST00000573474 C1QBP02746 253 aa11.09□□□□□ -0.63
CCDC40-209ENST00000573474 SLC25A6P12236 298 aa11.09□□□□□ -0.63
CCDC40-209ENST00000573474 EPHA1P21709 976 aa11.09□□□□□ -0.63
CCDC40-209ENST00000573474 MC5RP33032 325 aa11.09□□□□□ -0.63
CCDC40-209ENST00000573474 LGALS4P56470 323 aa11.09□□□□□ -0.63
CCDC40-209ENST00000573474 ZFP69Q49AA0 526 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms