RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ZCWPW2Q504Y3 356 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 LIN52Q52LA3 116 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 TRMT12Q53H54 448 aaKnown RBP0.8□□□□□ -2.28
VPS35-207ENST00000568191 TMEM97Q5BJF2 176 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 ACSBG2Q5FVE4 666 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 MRPL2Q5T653 305 aaKnown RBP0.8□□□□□ -2.28
VPS35-207ENST00000568191 HIST2H3PS2Q5TEC6 136 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 SPATA31B1PQ5VZV4 182 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 TMEM215Q68D42 235 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 ELP2Q6IA86 826 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 C3orf33Q6P1S2 294 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 SFXN4Q6P4A7 337 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 SCGB1D4Q6XE38 83 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 CLEC20AQ6ZU45 233 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 OLIG3Q7RTU3 272 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 SLC36A1Q7Z2H8 476 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 MSRB3Q8IXL7 192 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 C1orf158Q8N1D5 194 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 ZNF676Q8N7Q3 588 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 OR10D3Q8NH80 312 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 MFSD8Q8NHS3 518 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 Q8WTZ3 238 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 DYDC1Q8WWB3 177 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 OR5P3Q8WZ94 311 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 CCL17Q92583 94 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 SLC35B4Q969S0 331 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 TMBIM1Q969X1 311 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 BTF3L4Q96K17 158 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 SIGMAR1Q99720 223 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 CMSS1Q9BQ75 279 aaKnown RBP0.8□□□□□ -2.28
VPS35-207ENST00000568191 DDA1Q9BW61 102 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 HIGD2AQ9BW72 106 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 EBPLQ9BY08 206 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 PCBD2Q9H0N5 130 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 DCSTAMPQ9H295 470 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 TXNIPQ9H3M7 391 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 C11orf49Q9H6J7 331 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 NMNAT1Q9HAN9 279 aaPredicted RBP0.8□□□□□ -2.28
VPS35-207ENST00000568191 BATF3Q9NR55 127 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 ARMC1Q9NVT9 282 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 RBM12B-AS1Q9P1G2 102 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 VPREB3Q9UKI3 123 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 HHLA2Q9UM44 414 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 C14orf166Q9Y224 244 aaKnown RBP0.8□□□□□ -2.28
VPS35-207ENST00000568191 ZNF443Q9Y2A4 671 aaPredicted RBP0.8□□□□□ -2.28
VPS35-207ENST00000568191 KLF13Q9Y2Y9 288 aaPredicted RBP0.8□□□□□ -2.28
VPS35-207ENST00000568191 NDUFAF1Q9Y375 327 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 LSM5Q9Y4Y9 91 aaKnown RBP0.8□□□□□ -2.28
VPS35-207ENST00000568191 NUP155O75694 1391 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 CPDO75976 1380 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 MTUS2Q5JR59 1369 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 KIF1BO60333 1816 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 NOS1P29475 1434 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 NUP160Q12769 1436 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 GRIN2BQ13224 1484 aa0.8□□□□□ -2.28
VPS35-207ENST00000568191 MYH11P35749 1972 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 ZNF638Q14966 1978 aaKnown RBP0.79□□□□□ -2.28
VPS35-207ENST00000568191 HEATR5AQ86XA9 2040 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 HECW2Q9P2P5 1572 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 CEP152O94986 1710 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 A0A087WUJ7 227 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 TRAV8-3A0A0A6YYJ7 113 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 IGHV2-26A0A0B4J1V2 119 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 PQLC2LA1A4F0 135 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 OR6C6A6NF89 314 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 ZNF729A6NN14 1252 aaPredicted RBP0.79□□□□□ -2.28
VPS35-207ENST00000568191 OR11H12B2RN74 326 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 IGLL5B9A064 214 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 GYG2O15488 501 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 STK16O75716 305 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 ARL6IP5O75915 188 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 ATG12O94817 140 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 OR2A4O95047 310 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 DHFRP00374 187 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 IFNA1P01562 189 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 IFNA21P01568 189 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 IGKV1D-33P01593 117 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 IGKV1-33P01594 117 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 HBZP02008 142 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 ATP5G1P05496 136 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 CRYBA1P05813 215 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 CRYGDP07320 174 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 GUSBP08236 651 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 IL3P08700 152 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 OR4A8P0C604 315 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 OR4Q2P0C623 313 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 OR5G3P0C626 314 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 NBEAP1P0C6P0 100 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 ESDP10768 282 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 CD79AP11912 226 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 GTF2F2P13984 249 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 CD36P16671 472 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 PRTN3P24158 256 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 GADD45AP24522 165 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 SERPINB1P30740 379 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 RPL5P46777 297 aaKnown RBP0.79□□□□□ -2.28
VPS35-207ENST00000568191 OR1E2P47887 323 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 GABRA4P48169 554 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 MARCKSL1P49006 195 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 CDK9P50750 372 aaKnown RBP0.79□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 153 ms