RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 CRHBPP24387 322 aa12.38□□□□□ -0.43
CLN3-229ENST00000567963 RANBP1P43487 201 aa12.38□□□□□ -0.43
CLN3-229ENST00000567963 PSMD7P51665 324 aa12.38□□□□□ -0.43
CLN3-229ENST00000567963 TPPP2P59282 170 aa12.38□□□□□ -0.43
CLN3-229ENST00000567963 PLA2G7Q13093 441 aa12.38□□□□□ -0.43
CLN3-229ENST00000567963 FXYD3Q14802 87 aa12.38□□□□□ -0.43
CLN3-229ENST00000567963 PRSS48Q7RTY5 328 aa12.38□□□□□ -0.43
CLN3-229ENST00000567963 SBSPONQ8IVN8 264 aa12.38□□□□□ -0.43
CLN3-229ENST00000567963 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.38□□□□□ -0.43
CLN3-229ENST00000567963 OR4A4PQ8NGN8 299 aa12.38□□□□□ -0.43
CLN3-229ENST00000567963 ARPC1AQ92747 370 aa12.38□□□□□ -0.43
CLN3-229ENST00000567963 MGLLQ99685 303 aa12.38□□□□□ -0.43
CLN3-229ENST00000567963 CCDC90BQ9GZT6 254 aa12.38□□□□□ -0.43
CLN3-229ENST00000567963 KCNK7Q9Y2U2 307 aa12.38□□□□□ -0.43
CLN3-229ENST00000567963 TMEM272A0A1B0GTI8 110 aa12.37□□□□□ -0.43
CLN3-229ENST00000567963 ARPC1BO15143 372 aaKnown RBP12.37□□□□□ -0.43
CLN3-229ENST00000567963 SLC25A17O43808 307 aa12.37□□□□□ -0.43
CLN3-229ENST00000567963 TRGV3P03979 118 aa12.37□□□□□ -0.43
CLN3-229ENST00000567963 SERPINB10P48595 397 aa12.37□□□□□ -0.43
CLN3-229ENST00000567963 IZUMO2Q6UXV1 221 aa12.37□□□□□ -0.43
CLN3-229ENST00000567963 OR6Q1Q8NGQ2 317 aa12.37□□□□□ -0.43
CLN3-229ENST00000567963 ACOT13Q9NPJ3 140 aa12.37□□□□□ -0.43
CLN3-229ENST00000567963 RAB22AQ9UL26 194 aa12.37□□□□□ -0.43
CLN3-229ENST00000567963 C3orf84H3BNL1 204 aa12.36□□□□□ -0.43
CLN3-229ENST00000567963 M0R1X1 148 aa12.36□□□□□ -0.43
CLN3-229ENST00000567963 FABP7O15540 132 aa12.36□□□□□ -0.43
CLN3-229ENST00000567963 IGLV2-23P01705 113 aa12.36□□□□□ -0.43
CLN3-229ENST00000567963 CD3GP09693 182 aa12.36□□□□□ -0.43
CLN3-229ENST00000567963 MAP2K4P45985 399 aa12.36□□□□□ -0.43
CLN3-229ENST00000567963 SSBP2P81877 361 aaPredicted RBP12.36□□□□□ -0.43
CLN3-229ENST00000567963 MRPS15P82914 257 aaKnown RBP12.36□□□□□ -0.43
CLN3-229ENST00000567963 PITPNAQ00169 270 aa12.36□□□□□ -0.43
CLN3-229ENST00000567963 HES5Q5TA89 166 aa12.36□□□□□ -0.43
CLN3-229ENST00000567963 GRPEL2Q8TAA5 225 aa12.36□□□□□ -0.43
CLN3-229ENST00000567963 OR4C12Q96R67 309 aa12.36□□□□□ -0.43
CLN3-229ENST00000567963 SLC35D1Q9NTN3 355 aa12.36□□□□□ -0.43
CLN3-229ENST00000567963 STAB2Q8WWQ8 2551 aa12.36□□□□□ -0.43
CLN3-229ENST00000567963 BET1O15155 118 aa12.35□□□□□ -0.43
CLN3-229ENST00000567963 GSTT2P0CG29 244 aa12.35□□□□□ -0.43
CLN3-229ENST00000567963 GSTT2BP0CG30 244 aa12.35□□□□□ -0.43
CLN3-229ENST00000567963 LGALS7P47929 136 aa12.35□□□□□ -0.43
CLN3-229ENST00000567963 MOGAT2Q3SYC2 334 aa12.35□□□□□ -0.43
CLN3-229ENST00000567963 IGSF11Q5DX21 431 aa12.35□□□□□ -0.43
CLN3-229ENST00000567963 OVCH2Q7RTZ1 564 aa12.35□□□□□ -0.43
CLN3-229ENST00000567963 OR10J5Q8NHC4 309 aa12.35□□□□□ -0.43
CLN3-229ENST00000567963 RAB3CQ96E17 227 aa12.35□□□□□ -0.43
CLN3-229ENST00000567963 OR2D2Q9H210 308 aa12.35□□□□□ -0.43
CLN3-229ENST00000567963 ZNF355PQ9NSJ1 428 aa12.35□□□□□ -0.43
CLN3-229ENST00000567963 SDHAF2Q9NX18 166 aa12.35□□□□□ -0.43
CLN3-229ENST00000567963 DNAH7Q8WXX0 4024 aa12.35□□□□□ -0.43
CLN3-229ENST00000567963 TRBV6-7A0A0A0MS04 114 aa12.34□□□□□ -0.43
CLN3-229ENST00000567963 H3BUA1 57 aa12.34□□□□□ -0.43
CLN3-229ENST00000567963 CNIH1O95406 144 aa12.34□□□□□ -0.43
CLN3-229ENST00000567963 CRYGBP07316 175 aa12.34□□□□□ -0.43
CLN3-229ENST00000567963 FCGR3AP08637 254 aa12.34□□□□□ -0.43
CLN3-229ENST00000567963 FRMD6-AS1P0C7T7 363 aa12.34□□□□□ -0.43
CLN3-229ENST00000567963 HSPA13P48723 471 aa12.34□□□□□ -0.43
CLN3-229ENST00000567963 PJVKQ0ZLH3 352 aa12.34□□□□□ -0.43
CLN3-229ENST00000567963 POC5Q8NA72 575 aa12.34□□□□□ -0.43
CLN3-229ENST00000567963 OR5T1Q8NG75 326 aa12.34□□□□□ -0.43
CLN3-229ENST00000567963 OR10R2Q8NGX6 335 aa12.34□□□□□ -0.43
CLN3-229ENST00000567963 CABLES2Q9BTV7 478 aa12.34□□□□□ -0.43
CLN3-229ENST00000567963 RANGRFQ9HD47 186 aaPredicted RBP12.34□□□□□ -0.43
CLN3-229ENST00000567963 TRIM64CA6NLI5 447 aa12.34□□□□□ -0.43
CLN3-229ENST00000567963 DIRAS3O95661 229 aa12.34□□□□□ -0.43
CLN3-229ENST00000567963 GNB3P16520 340 aa12.34□□□□□ -0.43
CLN3-229ENST00000567963 TMEM68Q96MH6 324 aa12.34□□□□□ -0.43
CLN3-229ENST00000567963 RCHY1Q96PM5 261 aa12.34□□□□□ -0.43
CLN3-229ENST00000567963 ELOVL1Q9BW60 279 aa12.34□□□□□ -0.43
CLN3-229ENST00000567963 TRAV1-2A0A0B4J238 106 aa12.33□□□□□ -0.44
CLN3-229ENST00000567963 A0A0G2JLM5 398 aa12.33□□□□□ -0.44
CLN3-229ENST00000567963 C13orf42A0A1B0GVH6 325 aa12.33□□□□□ -0.44
CLN3-229ENST00000567963 SHISA3A0PJX4 238 aa12.33□□□□□ -0.44
CLN3-229ENST00000567963 IFITM5A6NNB3 132 aa12.33□□□□□ -0.44
CLN3-229ENST00000567963 RAB27BO00194 218 aa12.33□□□□□ -0.44
CLN3-229ENST00000567963 PDCD5O14737 125 aa12.33□□□□□ -0.44
CLN3-229ENST00000567963 OR10A3P58181 314 aa12.33□□□□□ -0.44
CLN3-229ENST00000567963 TAGLNQ01995 201 aaKnown RBP12.33□□□□□ -0.44
CLN3-229ENST00000567963 TBCEQ15813 527 aaPredicted RBP12.33□□□□□ -0.44
CLN3-229ENST00000567963 SSX1Q16384 188 aa12.33□□□□□ -0.44
CLN3-229ENST00000567963 C5orf30Q96GV9 206 aa12.33□□□□□ -0.44
CLN3-229ENST00000567963 HARBI1Q96MB7 349 aa12.33□□□□□ -0.44
CLN3-229ENST00000567963 ZNF230Q9UIE0 474 aaPredicted RBP12.33□□□□□ -0.44
CLN3-229ENST00000567963 SRRM4A7MD48 611 aaKnown RBP12.32□□□□□ -0.44
CLN3-229ENST00000567963 MFNGO00587 321 aa12.32□□□□□ -0.44
CLN3-229ENST00000567963 BRI3O95415 125 aa12.32□□□□□ -0.44
CLN3-229ENST00000567963 IGLV1-51P01701 117 aa12.32□□□□□ -0.44
CLN3-229ENST00000567963 HIST1H1DP16402 221 aaKnown RBP12.32□□□□□ -0.44
CLN3-229ENST00000567963 RAB6AP20340 208 aa12.32□□□□□ -0.44
CLN3-229ENST00000567963 ZP3P21754 424 aa12.32□□□□□ -0.44
CLN3-229ENST00000567963 GADD45AP24522 165 aa12.32□□□□□ -0.44
CLN3-229ENST00000567963 SRSF7Q16629 238 aaKnown RBP eCLIP12.32□□□□□ -0.44
CLN3-229ENST00000567963 TMEM177Q53S58 311 aa12.32□□□□□ -0.44
CLN3-229ENST00000567963 BVESQ8NE79 360 aa12.32□□□□□ -0.44
CLN3-229ENST00000567963 MAFIPQ8WZ33 124 aa12.32□□□□□ -0.44
CLN3-229ENST00000567963 RAB26Q9ULW5 256 aa12.32□□□□□ -0.44
CLN3-229ENST00000567963 STUB1Q9UNE7 303 aa12.32□□□□□ -0.44
CLN3-229ENST00000567963 A0A075B6Q4 140 aa12.31□□□□□ -0.44
CLN3-229ENST00000567963 SHOXO15266 292 aa12.31□□□□□ -0.44
CLN3-229ENST00000567963 CBX3Q13185 183 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 191.3 ms