RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 POLDIP2Q9Y2S7 368 aa11.75□□□□□ -0.53
VPS9D1-202ENST00000561976 TRAPPC1Q9Y5R8 145 aa11.75□□□□□ -0.53
VPS9D1-202ENST00000561976 FAM186AA6NE01 2351 aa11.75□□□□□ -0.53
VPS9D1-202ENST00000561976 C17orf112F2Z3M2 114 aa11.74□□□□□ -0.53
VPS9D1-202ENST00000561976 EREGO14944 169 aa11.74□□□□□ -0.53
VPS9D1-202ENST00000561976 CEBPDP49716 269 aaPredicted RBP11.74□□□□□ -0.53
VPS9D1-202ENST00000561976 C3AR1Q16581 482 aa11.74□□□□□ -0.53
VPS9D1-202ENST00000561976 BTNL3Q6UXE8 466 aa11.74□□□□□ -0.53
VPS9D1-202ENST00000561976 HLA-CQ95604 372 aa11.74□□□□□ -0.53
VPS9D1-202ENST00000561976 FAM173AQ9BQD7 235 aa11.74□□□□□ -0.53
VPS9D1-202ENST00000561976 ZNF703Q9H7S9 590 aaPredicted RBP11.74□□□□□ -0.53
VPS9D1-202ENST00000561976 MED12LQ86YW9 2145 aa11.74□□□□□ -0.53
VPS9D1-202ENST00000561976 TYMSP04818 313 aa11.74□□□□□ -0.53
VPS9D1-202ENST00000561976 NPPCP23582 126 aa11.74□□□□□ -0.53
VPS9D1-202ENST00000561976 IL3RAP26951 378 aa11.74□□□□□ -0.53
VPS9D1-202ENST00000561976 MAGEA5P43359 124 aa11.74□□□□□ -0.53
VPS9D1-202ENST00000561976 PPP1CBP62140 327 aa11.74□□□□□ -0.53
VPS9D1-202ENST00000561976 CATR1Q13166 79 aa11.74□□□□□ -0.53
VPS9D1-202ENST00000561976 FAM53AQ6NSI3 398 aaPredicted RBP11.74□□□□□ -0.53
VPS9D1-202ENST00000561976 WDR86Q86TI4 376 aa11.74□□□□□ -0.53
VPS9D1-202ENST00000561976 Q8IYB0 196 aa11.74□□□□□ -0.53
VPS9D1-202ENST00000561976 GALMQ96C23 342 aa11.74□□□□□ -0.53
VPS9D1-202ENST00000561976 MBNL3Q9NUK0 354 aaKnown RBP11.74□□□□□ -0.53
VPS9D1-202ENST00000561976 SIT1Q9Y3P8 196 aa11.74□□□□□ -0.53
VPS9D1-202ENST00000561976 FRYLO94915 3013 aa11.74□□□□□ -0.53
VPS9D1-202ENST00000561976 PMS2P5A8MQ11 134 aa11.73□□□□□ -0.53
VPS9D1-202ENST00000561976 IFNL4K9M1U5 179 aa11.73□□□□□ -0.53
VPS9D1-202ENST00000561976 GRPP07492 148 aa11.73□□□□□ -0.53
VPS9D1-202ENST00000561976 DUSP3P51452 185 aaPredicted RBP11.73□□□□□ -0.53
VPS9D1-202ENST00000561976 PMS2CLQ68D20 193 aa11.73□□□□□ -0.53
VPS9D1-202ENST00000561976 H2BFWTQ7Z2G1 175 aa11.73□□□□□ -0.53
VPS9D1-202ENST00000561976 GBGT1Q8N5D6 347 aa11.73□□□□□ -0.53
VPS9D1-202ENST00000561976 OR52L2PQ8NGH6 319 aa11.73□□□□□ -0.53
VPS9D1-202ENST00000561976 CT55Q8WUE5 264 aa11.73□□□□□ -0.53
VPS9D1-202ENST00000561976 ATG101Q9BSB4 218 aa11.73□□□□□ -0.53
VPS9D1-202ENST00000561976 FKBP11Q9NYL4 201 aa11.73□□□□□ -0.53
VPS9D1-202ENST00000561976 WIPI2Q9Y4P8 454 aa11.73□□□□□ -0.53
VPS9D1-202ENST00000561976 C17orf98A8MV24 154 aa11.73□□□□□ -0.53
VPS9D1-202ENST00000561976 PATE3B3GLJ2 98 aa11.73□□□□□ -0.53
VPS9D1-202ENST00000561976 DCAF12Q5T6F0 453 aa11.73□□□□□ -0.53
VPS9D1-202ENST00000561976 NINJ1Q92982 152 aa11.73□□□□□ -0.53
VPS9D1-202ENST00000561976 CIB3Q96Q77 187 aaPredicted RBP11.73□□□□□ -0.53
VPS9D1-202ENST00000561976 NDUFB4O95168 129 aa11.73□□□□□ -0.53
VPS9D1-202ENST00000561976 NUTF2P61970 127 aaKnown RBP11.73□□□□□ -0.53
VPS9D1-202ENST00000561976 LCN2P80188 198 aa11.73□□□□□ -0.53
VPS9D1-202ENST00000561976 ZXDAP98168 799 aa11.73□□□□□ -0.53
VPS9D1-202ENST00000561976 SSPNQ14714 243 aa11.73□□□□□ -0.53
VPS9D1-202ENST00000561976 LINC01551Q86U37 167 aa11.73□□□□□ -0.53
VPS9D1-202ENST00000561976 MDP1Q86V88 176 aa11.73□□□□□ -0.53
VPS9D1-202ENST00000561976 ZBTB34Q8NCN2 500 aa11.73□□□□□ -0.53
VPS9D1-202ENST00000561976 TMEM68Q96MH6 324 aa11.73□□□□□ -0.53
VPS9D1-202ENST00000561976 VPS13AQ96RL7 3174 aa11.72□□□□□ -0.53
VPS9D1-202ENST00000561976 TRAV38-1A0A0B4J264 116 aa11.72□□□□□ -0.53
VPS9D1-202ENST00000561976 SELEP16581 610 aa11.72□□□□□ -0.53
VPS9D1-202ENST00000561976 ATP5G3P48201 142 aa11.72□□□□□ -0.53
VPS9D1-202ENST00000561976 RAB4BP61018 213 aa11.72□□□□□ -0.53
VPS9D1-202ENST00000561976 PLGLB1Q02325 96 aa11.72□□□□□ -0.53
VPS9D1-202ENST00000561976 A0A1W2PPV4 95 aa11.72□□□□□ -0.53
VPS9D1-202ENST00000561976 DNAJC13O75165 2243 aa11.72□□□□□ -0.53
VPS9D1-202ENST00000561976 NEURL1O76050 574 aa11.72□□□□□ -0.53
VPS9D1-202ENST00000561976 GNB1P62873 340 aa11.72□□□□□ -0.53
VPS9D1-202ENST00000561976 ABHD17BQ5VST6 288 aa11.72□□□□□ -0.53
VPS9D1-202ENST00000561976 TEX38Q6PEX7 206 aa11.72□□□□□ -0.53
VPS9D1-202ENST00000561976 TDHQ8IZJ6 230 aa11.72□□□□□ -0.53
VPS9D1-202ENST00000561976 C5orf30Q96GV9 206 aa11.72□□□□□ -0.53
VPS9D1-202ENST00000561976 DERL1Q9BUN8 251 aa11.72□□□□□ -0.53
VPS9D1-202ENST00000561976 MRPL37Q9BZE1 423 aaKnown RBP11.72□□□□□ -0.53
VPS9D1-202ENST00000561976 CBLN4Q9NTU7 201 aa11.72□□□□□ -0.53
VPS9D1-202ENST00000561976 A0A1B0GUS0 222 aa11.71□□□□□ -0.53
VPS9D1-202ENST00000561976 TMEM30CPA0ZSE6 113 aa11.71□□□□□ -0.53
VPS9D1-202ENST00000561976 PGPEP1LA6NFU8 196 aa11.71□□□□□ -0.53
VPS9D1-202ENST00000561976 C12orf77C9JDV5 145 aa11.71□□□□□ -0.53
VPS9D1-202ENST00000561976 PDE6DO43924 150 aa11.71□□□□□ -0.53
VPS9D1-202ENST00000561976 HAND1O96004 215 aa11.71□□□□□ -0.53
VPS9D1-202ENST00000561976 C1QTNF9P0C862 333 aa11.71□□□□□ -0.53
VPS9D1-202ENST00000561976 EDDM3BP56851 147 aa11.71□□□□□ -0.53
VPS9D1-202ENST00000561976 ERVK11-1P61568 191 aa11.71□□□□□ -0.53
VPS9D1-202ENST00000561976 GCSAMLQ5JQS6 135 aa11.71□□□□□ -0.53
VPS9D1-202ENST00000561976 C6orf15Q6UXA7 325 aaPredicted RBP11.71□□□□□ -0.53
VPS9D1-202ENST00000561976 TMEM256Q8N2U0 113 aa11.71□□□□□ -0.53
VPS9D1-202ENST00000561976 OR2J1Q9GZK6 312 aa11.71□□□□□ -0.53
VPS9D1-202ENST00000561976 USF3Q68DE3 2245 aa11.71□□□□□ -0.54
VPS9D1-202ENST00000561976 DOCK10Q96BY6 2186 aa11.71□□□□□ -0.54
VPS9D1-202ENST00000561976 ZNF705FA8MVS1 300 aaPredicted RBP11.71□□□□□ -0.54
VPS9D1-202ENST00000561976 MLNRO43193 412 aa11.71□□□□□ -0.54
VPS9D1-202ENST00000561976 PSPNO60542 156 aa11.71□□□□□ -0.54
VPS9D1-202ENST00000561976 CLDN14O95500 239 aa11.71□□□□□ -0.54
VPS9D1-202ENST00000561976 P0C879 139 aa11.71□□□□□ -0.54
VPS9D1-202ENST00000561976 ZNF705DP0CH99 300 aaPredicted RBP11.71□□□□□ -0.54
VPS9D1-202ENST00000561976 ZNF705BP0CI00 300 aaPredicted RBP11.71□□□□□ -0.54
VPS9D1-202ENST00000561976 ZNF146Q15072 292 aa11.71□□□□□ -0.54
VPS9D1-202ENST00000561976 TBC1D28Q2M2D7 210 aa11.71□□□□□ -0.54
VPS9D1-202ENST00000561976 TIPARPQ7Z3E1 657 aaKnown RBP11.71□□□□□ -0.54
VPS9D1-202ENST00000561976 NANOS1Q8WY41 292 aaKnown RBP11.71□□□□□ -0.54
VPS9D1-202ENST00000561976 SDSLQ96GA7 329 aa11.71□□□□□ -0.54
VPS9D1-202ENST00000561976 WDYHV1Q96HA8 205 aa11.71□□□□□ -0.54
VPS9D1-202ENST00000561976 NEU1Q99519 415 aa11.71□□□□□ -0.54
VPS9D1-202ENST00000561976 TTTY12Q9BZ98 90 aa11.71□□□□□ -0.54
VPS9D1-202ENST00000561976 PPP1R14DQ9NXH3 145 aa11.71□□□□□ -0.54
VPS9D1-202ENST00000561976 RAB29O14966 203 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms