RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 DLX4Q92988 240 aaPredicted RBP13.71□□□□□ -0.21
HDDC3-205ENST00000559898 CHCHD6Q9BRQ6 235 aa13.71□□□□□ -0.21
HDDC3-205ENST00000559898 CABLES2Q9BTV7 478 aa13.71□□□□□ -0.21
HDDC3-205ENST00000559898 TOLLIPQ9H0E2 274 aa13.71□□□□□ -0.21
HDDC3-205ENST00000559898 OR2D2Q9H210 308 aa13.71□□□□□ -0.21
HDDC3-205ENST00000559898 RNF167Q9H6Y7 350 aa13.71□□□□□ -0.21
HDDC3-205ENST00000559898 ZNF221Q9UK13 617 aa13.71□□□□□ -0.21
HDDC3-205ENST00000559898 HUWE1Q7Z6Z7 4374 aaKnown RBP13.7□□□□□ -0.22
HDDC3-205ENST00000559898 TRBV6-7A0A0A0MS04 114 aa13.7□□□□□ -0.22
HDDC3-205ENST00000559898 SRRM4A7MD48 611 aaKnown RBP13.7□□□□□ -0.22
HDDC3-205ENST00000559898 SLC25A17O43808 307 aa13.7□□□□□ -0.22
HDDC3-205ENST00000559898 TFAP2AP05549 437 aa13.7□□□□□ -0.22
HDDC3-205ENST00000559898 HIST1H1DP16402 221 aaKnown RBP13.7□□□□□ -0.22
HDDC3-205ENST00000559898 CD69Q07108 199 aa13.7□□□□□ -0.22
HDDC3-205ENST00000559898 ZNF616Q08AN1 781 aa13.7□□□□□ -0.22
HDDC3-205ENST00000559898 VAX1Q5SQQ9 334 aa13.7□□□□□ -0.22
HDDC3-205ENST00000559898 UBE2UQ5VVX9 321 aa13.7□□□□□ -0.22
HDDC3-205ENST00000559898 UNQ5815/PRO19632Q6UWF5 114 aa13.7□□□□□ -0.22
HDDC3-205ENST00000559898 OR4A4PQ8NGN8 299 aa13.7□□□□□ -0.22
HDDC3-205ENST00000559898 TXNL4BQ9NX01 149 aaKnown RBP13.7□□□□□ -0.22
HDDC3-205ENST00000559898 MGAT4AQ9UM21 535 aa13.7□□□□□ -0.22
HDDC3-205ENST00000559898 FOXA2Q9Y261 457 aaPredicted RBP13.7□□□□□ -0.22
HDDC3-205ENST00000559898 J3QRK9 145 aa13.69□□□□□ -0.22
HDDC3-205ENST00000559898 PDCD5O14737 125 aa13.69□□□□□ -0.22
HDDC3-205ENST00000559898 CRYGBP07316 175 aa13.69□□□□□ -0.22
HDDC3-205ENST00000559898 CLEC2LP0C7M8 214 aa13.69□□□□□ -0.22
HDDC3-205ENST00000559898 MYL9P24844 172 aa13.69□□□□□ -0.22
HDDC3-205ENST00000559898 PSMB9P28065 219 aa13.69□□□□□ -0.22
HDDC3-205ENST00000559898 GABARAPL2P60520 117 aa13.69□□□□□ -0.22
HDDC3-205ENST00000559898 OR51E2Q9H255 320 aa13.69□□□□□ -0.22
HDDC3-205ENST00000559898 SLC35D1Q9NTN3 355 aa13.69□□□□□ -0.22
HDDC3-205ENST00000559898 KMT2CQ8NEZ4 4911 aaKnown RBP13.68□□□□□ -0.22
HDDC3-205ENST00000559898 RBBP9O75884 186 aa13.68□□□□□ -0.22
HDDC3-205ENST00000559898 OR8U8P0C7N1 319 aa13.68□□□□□ -0.22
HDDC3-205ENST00000559898 RAB6AP20340 208 aa13.68□□□□□ -0.22
HDDC3-205ENST00000559898 PSMD7P51665 324 aa13.68□□□□□ -0.22
HDDC3-205ENST00000559898 HAPLN4Q86UW8 402 aa13.68□□□□□ -0.22
HDDC3-205ENST00000559898 BVESQ8NE79 360 aa13.68□□□□□ -0.22
HDDC3-205ENST00000559898 OR5T1Q8NG75 326 aa13.68□□□□□ -0.22
HDDC3-205ENST00000559898 GRPEL2Q8TAA5 225 aa13.68□□□□□ -0.22
HDDC3-205ENST00000559898 ASCL2Q99929 193 aa13.68□□□□□ -0.22
HDDC3-205ENST00000559898 ATG5Q9H1Y0 275 aa13.68□□□□□ -0.22
HDDC3-205ENST00000559898 BLOC1S6Q9UL45 172 aa13.68□□□□□ -0.22
HDDC3-205ENST00000559898 LINC00473A8K010 186 aa13.67□□□□□ -0.22
HDDC3-205ENST00000559898 LGALS1P09382 135 aaKnown RBP13.67□□□□□ -0.22
HDDC3-205ENST00000559898 APELAP0DMC3 54 aa13.67□□□□□ -0.22
HDDC3-205ENST00000559898 FXYD3Q14802 87 aa13.67□□□□□ -0.22
HDDC3-205ENST00000559898 ACTBL2Q562R1 376 aa13.67□□□□□ -0.22
HDDC3-205ENST00000559898 ZNF562Q6V9R5 426 aa13.67□□□□□ -0.22
HDDC3-205ENST00000559898 PDPNQ86YL7 162 aa13.67□□□□□ -0.22
HDDC3-205ENST00000559898 OR10J5Q8NHC4 309 aa13.67□□□□□ -0.22
HDDC3-205ENST00000559898 RNF5Q99942 180 aa13.67□□□□□ -0.22
HDDC3-205ENST00000559898 OVOL1O14753 267 aa13.66□□□□□ -0.22
HDDC3-205ENST00000559898 RBMXL2O75526 392 aaKnown RBP13.66□□□□□ -0.22
HDDC3-205ENST00000559898 TPPP2P59282 170 aa13.66□□□□□ -0.22
HDDC3-205ENST00000559898 ARFRP1Q13795 201 aa13.66□□□□□ -0.22
HDDC3-205ENST00000559898 CDNFQ49AH0 187 aa13.66□□□□□ -0.22
HDDC3-205ENST00000559898 H1FOOQ8IZA3 346 aaPredicted RBP13.66□□□□□ -0.22
HDDC3-205ENST00000559898 NUDCD2Q8WVJ2 157 aa13.66□□□□□ -0.22
HDDC3-205ENST00000559898 ARPC1AQ92747 370 aa13.66□□□□□ -0.22
HDDC3-205ENST00000559898 FLYWCH2Q96CP2 140 aaKnown RBP13.66□□□□□ -0.22
HDDC3-205ENST00000559898 RHOVQ96L33 236 aa13.66□□□□□ -0.22
HDDC3-205ENST00000559898 TSNAXQ99598 290 aaKnown RBP13.66□□□□□ -0.22
HDDC3-205ENST00000559898 GHITMQ9H3K2 345 aa13.66□□□□□ -0.22
HDDC3-205ENST00000559898 LINC01619G3V211 115 aa13.65□□□□□ -0.22
HDDC3-205ENST00000559898 SSX5O60225 188 aa13.65□□□□□ -0.22
HDDC3-205ENST00000559898 RAMP3O60896 148 aa13.65□□□□□ -0.22
HDDC3-205ENST00000559898 APOA2P02652 100 aa13.65□□□□□ -0.22
HDDC3-205ENST00000559898 GADD45AP24522 165 aa13.65□□□□□ -0.22
HDDC3-205ENST00000559898 MRPS15P82914 257 aaKnown RBP13.65□□□□□ -0.22
HDDC3-205ENST00000559898 AKIRIN2Q53H80 203 aa13.65□□□□□ -0.22
HDDC3-205ENST00000559898 IDO2Q6ZQW0 420 aa13.65□□□□□ -0.22
HDDC3-205ENST00000559898 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.65□□□□□ -0.22
HDDC3-205ENST00000559898 OR5H6Q8NGV6 325 aa13.65□□□□□ -0.22
HDDC3-205ENST00000559898 DDB2Q92466 427 aa13.65□□□□□ -0.22
HDDC3-205ENST00000559898 DAPK2Q9UIK4 370 aa13.65□□□□□ -0.22
HDDC3-205ENST00000559898 ADAM30Q9UKF2 790 aa13.65□□□□□ -0.22
HDDC3-205ENST00000559898 STUB1Q9UNE7 303 aa13.65□□□□□ -0.22
HDDC3-205ENST00000559898 ZNF256Q9Y2P7 627 aaPredicted RBP13.65□□□□□ -0.22
HDDC3-205ENST00000559898 IGKV1D-13A0A0B4J2D9 117 aa13.64□□□□□ -0.23
HDDC3-205ENST00000559898 TMEM235A6NFC5 223 aa13.64□□□□□ -0.23
HDDC3-205ENST00000559898 SPDEFO95238 335 aa13.64□□□□□ -0.23
HDDC3-205ENST00000559898 LY86O95711 162 aa13.64□□□□□ -0.23
HDDC3-205ENST00000559898 TRGV3P03979 118 aa13.64□□□□□ -0.23
HDDC3-205ENST00000559898 IGKV1-13P0DP09 117 aa13.64□□□□□ -0.23
HDDC3-205ENST00000559898 NFYAP23511 347 aaPredicted RBP13.64□□□□□ -0.23
HDDC3-205ENST00000559898 FGF9P31371 208 aaPredicted RBP13.64□□□□□ -0.23
HDDC3-205ENST00000559898 TGFBR1P36897 503 aa13.64□□□□□ -0.23
HDDC3-205ENST00000559898 SERPINB10P48595 397 aa13.64□□□□□ -0.23
HDDC3-205ENST00000559898 LGALS14Q8TCE9 139 aa13.64□□□□□ -0.23
HDDC3-205ENST00000559898 HARBI1Q96MB7 349 aa13.64□□□□□ -0.23
HDDC3-205ENST00000559898 ST6GALNAC5Q9BVH7 336 aa13.64□□□□□ -0.23
HDDC3-205ENST00000559898 RRP15Q9Y3B9 282 aaKnown RBP13.64□□□□□ -0.23
HDDC3-205ENST00000559898 TNCP24821 2201 aa13.63□□□□□ -0.23
HDDC3-205ENST00000559898 NOTOA8MTQ0 251 aa13.63□□□□□ -0.23
HDDC3-205ENST00000559898 SAP30O75446 220 aa13.63□□□□□ -0.23
HDDC3-205ENST00000559898 IGLV2-14P01704 120 aa13.63□□□□□ -0.23
HDDC3-205ENST00000559898 PTHLHP12272 177 aa13.63□□□□□ -0.23
HDDC3-205ENST00000559898 SPNP16150 400 aa13.63□□□□□ -0.23
HDDC3-205ENST00000559898 GALP22466 123 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms