RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 FAM223AQ8IWN6 122 aa12.76□□□□□ -0.37
VPS29-204ENST00000548259 ZNF383Q8NA42 475 aa12.76□□□□□ -0.37
VPS29-204ENST00000548259 GGTLC1Q9BX51 225 aa12.76□□□□□ -0.37
VPS29-204ENST00000548259 TMEM59Q9BXS4 323 aa12.76□□□□□ -0.37
VPS29-204ENST00000548259 PLEKHJ1Q9NW61 149 aa12.76□□□□□ -0.37
VPS29-204ENST00000548259 LOC100130705A0A1B0GUX0 176 aa12.75□□□□□ -0.37
VPS29-204ENST00000548259 ATP5HO75947 161 aa12.75□□□□□ -0.37
VPS29-204ENST00000548259 NAPSAO96009 420 aa12.75□□□□□ -0.37
VPS29-204ENST00000548259 TAS2R43P59537 309 aa12.75□□□□□ -0.37
VPS29-204ENST00000548259 TAGLNQ01995 201 aaKnown RBP12.75□□□□□ -0.37
VPS29-204ENST00000548259 ANKRD55Q3KP44 614 aa12.75□□□□□ -0.37
VPS29-204ENST00000548259 GLT8D1Q68CQ7 371 aa12.75□□□□□ -0.37
VPS29-204ENST00000548259 ZNF880Q6PDB4 577 aa12.75□□□□□ -0.37
VPS29-204ENST00000548259 CEMP1Q6PRD7 247 aaPredicted RBP12.75□□□□□ -0.37
VPS29-204ENST00000548259 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.75□□□□□ -0.37
VPS29-204ENST00000548259 PTX4Q96A99 478 aa12.75□□□□□ -0.37
VPS29-204ENST00000548259 HARBI1Q96MB7 349 aa12.75□□□□□ -0.37
VPS29-204ENST00000548259 PARP12Q9H0J9 701 aaKnown RBP12.75□□□□□ -0.37
VPS29-204ENST00000548259 LOC102724200A0A096LPH7 203 aaPredicted RBP12.74□□□□□ -0.37
VPS29-204ENST00000548259 M0R1X1 148 aa12.74□□□□□ -0.37
VPS29-204ENST00000548259 OR9G9P0C7N8 305 aa12.74□□□□□ -0.37
VPS29-204ENST00000548259 KIR2DS2P43631 304 aa12.74□□□□□ -0.37
VPS29-204ENST00000548259 RPS11P62280 158 aaKnown RBP eCLIP12.74□□□□□ -0.37
VPS29-204ENST00000548259 RPS27AP62979 156 aaKnown RBP12.74□□□□□ -0.37
VPS29-204ENST00000548259 HLA-DRB3P79483 266 aa12.74□□□□□ -0.37
VPS29-204ENST00000548259 RHOGP84095 191 aa12.74□□□□□ -0.37
VPS29-204ENST00000548259 DEFA5Q01523 94 aa12.74□□□□□ -0.37
VPS29-204ENST00000548259 PJVKQ0ZLH3 352 aa12.74□□□□□ -0.37
VPS29-204ENST00000548259 EXOSC2Q13868 293 aaKnown RBP12.74□□□□□ -0.37
VPS29-204ENST00000548259 TTC23Q5W5X9 447 aa12.74□□□□□ -0.37
VPS29-204ENST00000548259 KCNG3Q8TAE7 436 aa12.74□□□□□ -0.37
VPS29-204ENST00000548259 PYDC1Q8WXC3 89 aa12.74□□□□□ -0.37
VPS29-204ENST00000548259 C9orf16Q9BUW7 83 aa12.74□□□□□ -0.37
VPS29-204ENST00000548259 WFDC10AQ9H1F0 79 aa12.74□□□□□ -0.37
VPS29-204ENST00000548259 ZC4H2Q9NQZ6 224 aa12.74□□□□□ -0.37
VPS29-204ENST00000548259 OR1A1Q9P1Q5 309 aa12.74□□□□□ -0.37
VPS29-204ENST00000548259 MSGN1A6NI15 193 aa12.73□□□□□ -0.37
VPS29-204ENST00000548259 BMPR1BO00238 502 aa12.73□□□□□ -0.37
VPS29-204ENST00000548259 DYNC1I1O14576 645 aa12.73□□□□□ -0.37
VPS29-204ENST00000548259 SHOXO15266 292 aa12.73□□□□□ -0.37
VPS29-204ENST00000548259 FOLR2P14207 255 aa12.73□□□□□ -0.37
VPS29-204ENST00000548259 RTL8BQ17RB0 113 aa12.73□□□□□ -0.37
VPS29-204ENST00000548259 ZFP1Q6P2D0 407 aa12.73□□□□□ -0.37
VPS29-204ENST00000548259 TMEM217Q8N7C4 229 aa12.73□□□□□ -0.37
VPS29-204ENST00000548259 ADAD2Q8NCV1 583 aaKnown RBP12.73□□□□□ -0.37
VPS29-204ENST00000548259 PGLYRP3Q96LB9 341 aa12.73□□□□□ -0.37
VPS29-204ENST00000548259 DERL3Q96Q80 235 aa12.73□□□□□ -0.37
VPS29-204ENST00000548259 OVOL2Q9BRP0 275 aa12.73□□□□□ -0.37
VPS29-204ENST00000548259 DIMT1Q9UNQ2 313 aaKnown RBP12.73□□□□□ -0.37
VPS29-204ENST00000548259 TRBV6-6A0A0A6YYG2 114 aa12.72□□□□□ -0.37
VPS29-204ENST00000548259 C2orf70A6NJV1 201 aa12.72□□□□□ -0.37
VPS29-204ENST00000548259 CREBL2O60519 120 aaPredicted RBP12.72□□□□□ -0.37
VPS29-204ENST00000548259 ACTL6BO94805 426 aa12.72□□□□□ -0.37
VPS29-204ENST00000548259 RRASP10301 218 aa12.72□□□□□ -0.37
VPS29-204ENST00000548259 SSBP2P81877 361 aaPredicted RBP12.72□□□□□ -0.37
VPS29-204ENST00000548259 VMA21Q3ZAQ7 101 aa12.72□□□□□ -0.37
VPS29-204ENST00000548259 ZFP41Q8N8Y5 198 aa12.72□□□□□ -0.37
VPS29-204ENST00000548259 ZNF555Q8NEP9 628 aa12.72□□□□□ -0.37
VPS29-204ENST00000548259 OR52B4Q8NGK2 314 aa12.72□□□□□ -0.37
VPS29-204ENST00000548259 AKIP1Q9NQ31 210 aa12.72□□□□□ -0.37
VPS29-204ENST00000548259 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.71□□□□□ -0.37
VPS29-204ENST00000548259 GGCTO75223 188 aaKnown RBP12.71□□□□□ -0.37
VPS29-204ENST00000548259 LALBAP00709 142 aa12.71□□□□□ -0.37
VPS29-204ENST00000548259 IGLV2-23P01705 113 aa12.71□□□□□ -0.37
VPS29-204ENST00000548259 CRYGBP07316 175 aa12.71□□□□□ -0.37
VPS29-204ENST00000548259 APELAP0DMC3 54 aa12.71□□□□□ -0.37
VPS29-204ENST00000548259 SNRPBP14678 240 aaKnown RBP12.71□□□□□ -0.37
VPS29-204ENST00000548259 HTR2CP28335 458 aa12.71□□□□□ -0.37
VPS29-204ENST00000548259 BMI1P35226 326 aa12.71□□□□□ -0.37
VPS29-204ENST00000548259 TNFRSF9Q07011 255 aa12.71□□□□□ -0.37
VPS29-204ENST00000548259 TPBGQ13641 420 aa12.71□□□□□ -0.37
VPS29-204ENST00000548259 TNXAQ16473 311 aa12.71□□□□□ -0.37
VPS29-204ENST00000548259 SLC25A42Q86VD7 318 aa12.71□□□□□ -0.37
VPS29-204ENST00000548259 C10orf67Q8IYJ2 551 aa12.71□□□□□ -0.37
VPS29-204ENST00000548259 NECAP1Q8NC96 275 aa12.71□□□□□ -0.37
VPS29-204ENST00000548259 APH1BQ8WW43 257 aa12.71□□□□□ -0.37
VPS29-204ENST00000548259 WDR89Q96FK6 387 aaPredicted RBP12.71□□□□□ -0.37
VPS29-204ENST00000548259 TMEM80Q96HE8 168 aa12.71□□□□□ -0.37
VPS29-204ENST00000548259 SPIN2AQ99865 258 aa12.71□□□□□ -0.37
VPS29-204ENST00000548259 SPIN2BQ9BPZ2 258 aa12.71□□□□□ -0.37
VPS29-204ENST00000548259 C12orf4Q9NQ89 552 aa12.71□□□□□ -0.37
VPS29-204ENST00000548259 ZNF230Q9UIE0 474 aaPredicted RBP12.71□□□□□ -0.37
VPS29-204ENST00000548259 TP53TG1Q9Y2A0 90 aa12.71□□□□□ -0.37
VPS29-204ENST00000548259 A0A0J9YWU9 116 aa12.7□□□□□ -0.38
VPS29-204ENST00000548259 PNMA8CA0A1B0GUJ8 204 aa12.7□□□□□ -0.38
VPS29-204ENST00000548259 PROP1O75360 226 aa12.7□□□□□ -0.38
VPS29-204ENST00000548259 ATF4P18848 351 aaPredicted RBP12.7□□□□□ -0.38
VPS29-204ENST00000548259 SERPINB10P48595 397 aa12.7□□□□□ -0.38
VPS29-204ENST00000548259 APOC4P55056 127 aa12.7□□□□□ -0.38
VPS29-204ENST00000548259 SMN1Q16637 294 aaKnown RBP12.7□□□□□ -0.38
VPS29-204ENST00000548259 ZNF57Q68EA5 555 aaPredicted RBP12.7□□□□□ -0.38
VPS29-204ENST00000548259 TEX45Q8NA69 505 aa12.7□□□□□ -0.38
VPS29-204ENST00000548259 CYYR1Q96J86 154 aa12.7□□□□□ -0.38
VPS29-204ENST00000548259 URM1Q9BTM9 101 aaKnown RBP12.7□□□□□ -0.38
VPS29-204ENST00000548259 TM2D1Q9BX74 207 aa12.7□□□□□ -0.38
VPS29-204ENST00000548259 CLEC2DQ9UHP7 191 aa12.7□□□□□ -0.38
VPS29-204ENST00000548259 FRAS1Q86XX4 4008 aa12.7□□□□□ -0.38
VPS29-204ENST00000548259 LGALS9O00182 355 aa12.69□□□□□ -0.38
VPS29-204ENST00000548259 BPNT1O95861 308 aa12.69□□□□□ -0.38
VPS29-204ENST00000548259 LINC00205P59089 165 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms