RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 LYG1Q8N1E2 194 aa17.34■□□□□ 0.37
VPS28-212ENST00000530836 CIARTQ8N365 385 aaPredicted RBP17.34■□□□□ 0.37
VPS28-212ENST00000530836 OR9G1Q8NH87 305 aa17.34■□□□□ 0.37
VPS28-212ENST00000530836 TMUB1Q9BVT8 246 aa17.34■□□□□ 0.37
VPS28-212ENST00000530836 HIVEP1P15822 2718 aa17.34■□□□□ 0.37
VPS28-212ENST00000530836 M0R1X1 148 aa17.33■□□□□ 0.37
VPS28-212ENST00000530836 IGHV3-7P01780 117 aa17.33■□□□□ 0.37
VPS28-212ENST00000530836 IGHV2-5P01817 119 aa17.33■□□□□ 0.37
VPS28-212ENST00000530836 GNG10P50151 68 aa17.33■□□□□ 0.37
VPS28-212ENST00000530836 LRRC37A5PQ49AS3 106 aa17.33■□□□□ 0.37
VPS28-212ENST00000530836 NMSQ5H8A3 153 aa17.33■□□□□ 0.37
VPS28-212ENST00000530836 THOC7Q6I9Y2 204 aaKnown RBP17.33■□□□□ 0.37
VPS28-212ENST00000530836 FAM71F2Q6NXP2 309 aa17.33■□□□□ 0.37
VPS28-212ENST00000530836 SPAG16Q8N0X2 631 aa17.33■□□□□ 0.37
VPS28-212ENST00000530836 C11orf42Q8N5U0 333 aa17.33■□□□□ 0.37
VPS28-212ENST00000530836 TMEM133Q9H2Q1 129 aa17.33■□□□□ 0.37
VPS28-212ENST00000530836 HSPB11Q9Y547 144 aa17.33■□□□□ 0.37
VPS28-212ENST00000530836 ZNF469Q96JG9 3925 aaPredicted RBP17.33■□□□□ 0.37
VPS28-212ENST00000530836 FXYD6-FXYD2A0A087WZ82 144 aa17.32■□□□□ 0.36
VPS28-212ENST00000530836 SAA2-SAA4A0A096LPE2 208 aa17.32■□□□□ 0.36
VPS28-212ENST00000530836 M0R1W7 72 aa17.32■□□□□ 0.36
VPS28-212ENST00000530836 RBFOX2O43251 390 aaKnown RBP eCLIP17.32■□□□□ 0.364e-8■■■■□ 26.4
VPS28-212ENST00000530836 PROP1O75360 226 aa17.32■□□□□ 0.36
VPS28-212ENST00000530836 SAA2P0DJI9 122 aaPredicted RBP17.32■□□□□ 0.36
VPS28-212ENST00000530836 USF1P22415 310 aaPredicted RBP17.32■□□□□ 0.36
VPS28-212ENST00000530836 THBS3P49746 956 aa17.32■□□□□ 0.36
VPS28-212ENST00000530836 RPL30P62888 115 aaKnown RBP17.32■□□□□ 0.36
VPS28-212ENST00000530836 FAM219AQ8IW50 185 aa17.32■□□□□ 0.36
VPS28-212ENST00000530836 ODF3L1Q8IXM7 274 aa17.32■□□□□ 0.36
VPS28-212ENST00000530836 RRNAD1Q96FB5 475 aaKnown RBP17.32■□□□□ 0.36
VPS28-212ENST00000530836 FLNAP21333 2647 aaKnown RBP17.32■□□□□ 0.36
VPS28-212ENST00000530836 A0A1B0GU03 582 aa17.32■□□□□ 0.36
VPS28-212ENST00000530836 J3QR06 171 aa17.32■□□□□ 0.36
VPS28-212ENST00000530836 RLN2P04090 185 aa17.32■□□□□ 0.36
VPS28-212ENST00000530836 CD99P14209 185 aa17.32■□□□□ 0.36
VPS28-212ENST00000530836 LPAR6P43657 344 aa17.32■□□□□ 0.36
VPS28-212ENST00000530836 ERVFRD-1P60508 538 aa17.32■□□□□ 0.36
VPS28-212ENST00000530836 LOXL1Q08397 574 aaPredicted RBP17.32■□□□□ 0.36
VPS28-212ENST00000530836 SMCO1Q147U7 214 aa17.32■□□□□ 0.36
VPS28-212ENST00000530836 LAMTOR1Q6IAA8 161 aa17.32■□□□□ 0.36
VPS28-212ENST00000530836 ZNF546Q86UE3 836 aa17.32■□□□□ 0.36
VPS28-212ENST00000530836 GRPEL2Q8TAA5 225 aa17.32■□□□□ 0.36
VPS28-212ENST00000530836 NARFLQ9H6Q4 476 aa17.32■□□□□ 0.36
VPS28-212ENST00000530836 IGHV4-61A0A0C4DH41 118 aa17.31■□□□□ 0.36
VPS28-212ENST00000530836 A0A1W2PPE3 182 aa17.31■□□□□ 0.36
VPS28-212ENST00000530836 LINC00473A8K010 186 aa17.31■□□□□ 0.36
VPS28-212ENST00000530836 RPL39P5Q59GN2 51 aa17.31■□□□□ 0.36
VPS28-212ENST00000530836 UTF1Q5T230 341 aa17.31■□□□□ 0.36
VPS28-212ENST00000530836 PRSS54Q6PEW0 395 aa17.31■□□□□ 0.36
VPS28-212ENST00000530836 C1orf122Q6ZSJ8 110 aa17.31■□□□□ 0.36
VPS28-212ENST00000530836 ABHD12Q8N2K0 398 aa17.31■□□□□ 0.36
VPS28-212ENST00000530836 RNASE11Q8TAA1 199 aaKnown RBP17.31■□□□□ 0.36
VPS28-212ENST00000530836 TMEM186Q96B77 213 aa17.31■□□□□ 0.36
VPS28-212ENST00000530836 ZNF251Q9BRH9 671 aa17.31■□□□□ 0.36
VPS28-212ENST00000530836 DOCK11Q5JSL3 2073 aa17.31■□□□□ 0.36
VPS28-212ENST00000530836 MALRD1Q5VYJ5 2156 aa17.31■□□□□ 0.36
VPS28-212ENST00000530836 A8MXK9 166 aa17.3■□□□□ 0.36
VPS28-212ENST00000530836 C22orf46C9J442 243 aa17.3■□□□□ 0.36
VPS28-212ENST00000530836 LYL1P12980 280 aa17.3■□□□□ 0.36
VPS28-212ENST00000530836 IL3RAP26951 378 aa17.3■□□□□ 0.36
VPS28-212ENST00000530836 AKR1C2P52895 323 aa17.3■□□□□ 0.36
VPS28-212ENST00000530836 PRRX1P54821 245 aa17.3■□□□□ 0.36
VPS28-212ENST00000530836 TAGLNQ01995 201 aaKnown RBP17.3■□□□□ 0.36
VPS28-212ENST00000530836 RAB32Q13637 225 aa17.3■□□□□ 0.36
VPS28-212ENST00000530836 LGALSLQ3ZCW2 172 aaPredicted RBP17.3■□□□□ 0.36
VPS28-212ENST00000530836 KIR3DL3Q8N743 410 aa17.3■□□□□ 0.36
VPS28-212ENST00000530836 MAPK1IP1LQ8NDC0 245 aa17.3■□□□□ 0.36
VPS28-212ENST00000530836 OR10X1Q8NGY0 326 aa17.3■□□□□ 0.36
VPS28-212ENST00000530836 PLEKHA2Q9HB19 425 aa17.3■□□□□ 0.36
VPS28-212ENST00000530836 YLPM1P49750 1951 aaKnown RBP17.3■□□□□ 0.36
VPS28-212ENST00000530836 TOR1AO14656 332 aa17.29■□□□□ 0.36
VPS28-212ENST00000530836 SMAD7O15105 426 aaKnown RBP17.29■□□□□ 0.36
VPS28-212ENST00000530836 ARPC5O15511 151 aa17.29■□□□□ 0.36
VPS28-212ENST00000530836 ENSAO43768 121 aaKnown RBP17.29■□□□□ 0.36
VPS28-212ENST00000530836 HPRT1P00492 218 aa17.29■□□□□ 0.36
VPS28-212ENST00000530836 IGKV1-39P01597 117 aa17.29■□□□□ 0.36
VPS28-212ENST00000530836 IGKV1D-39P04432 117 aa17.29■□□□□ 0.36
VPS28-212ENST00000530836 FOSL1P15407 271 aa17.29■□□□□ 0.36
VPS28-212ENST00000530836 ZNF137PP52743 207 aa17.29■□□□□ 0.36
VPS28-212ENST00000530836 ZNF833PQ6ZTB9 187 aa17.29■□□□□ 0.36
VPS28-212ENST00000530836 OR4D5Q8NGN0 318 aa17.29■□□□□ 0.36
VPS28-212ENST00000530836 ONECUT1Q9UBC0 465 aa17.29■□□□□ 0.36
VPS28-212ENST00000530836 L7N2F9 121 aa17.29■□□□□ 0.36
VPS28-212ENST00000530836 RAMP3O60896 148 aa17.29■□□□□ 0.36
VPS28-212ENST00000530836 NCR3LG1Q68D85 454 aa17.29■□□□□ 0.36
VPS28-212ENST00000530836 INO80EQ8NBZ0 244 aaPredicted RBP17.29■□□□□ 0.36
VPS28-212ENST00000530836 CLDND2Q8NHS1 167 aa17.29■□□□□ 0.36
VPS28-212ENST00000530836 DDB2Q92466 427 aa17.29■□□□□ 0.36
VPS28-212ENST00000530836 CLEC7AQ9BXN2 247 aa17.29■□□□□ 0.36
VPS28-212ENST00000530836 GON7Q9BXV9 100 aa17.29■□□□□ 0.36
VPS28-212ENST00000530836 MFFQ9GZY8 342 aa17.29■□□□□ 0.36
VPS28-212ENST00000530836 MBD2Q9UBB5 411 aa17.29■□□□□ 0.36
VPS28-212ENST00000530836 TNFSF18Q9UNG2 199 aa17.29■□□□□ 0.36
VPS28-212ENST00000530836 MMP24Q9Y5R2 645 aa17.29■□□□□ 0.36
VPS28-212ENST00000530836 ACANP16112 2415 aa17.29■□□□□ 0.36
VPS28-212ENST00000530836 ST8SIA3O43173 380 aa17.28■□□□□ 0.36
VPS28-212ENST00000530836 OR2F2O95006 317 aa17.28■□□□□ 0.36
VPS28-212ENST00000530836 BRWD1-AS2P59051 145 aa17.28■□□□□ 0.36
VPS28-212ENST00000530836 S100A10P60903 97 aa17.28■□□□□ 0.36
VPS28-212ENST00000530836 LMO4P61968 165 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms