RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 METTL1Q9UBP6 276 aaKnown RBP8.98□□□□□ -0.97
VCAN-212ENST00000515397 TRAV41A0A0B4J266 112 aa8.97□□□□□ -0.97
VCAN-212ENST00000515397 MEIS3P1A6NDR6 274 aa8.97□□□□□ -0.97
VCAN-212ENST00000515397 SRRM4A7MD48 611 aaKnown RBP8.97□□□□□ -0.97
VCAN-212ENST00000515397 CCL24O00175 119 aa8.97□□□□□ -0.97
VCAN-212ENST00000515397 SOX15O60248 233 aa8.97□□□□□ -0.97
VCAN-212ENST00000515397 ELANEP08246 267 aa8.97□□□□□ -0.97
VCAN-212ENST00000515397 DTYMKP23919 212 aa8.97□□□□□ -0.97
VCAN-212ENST00000515397 PPIFP30405 207 aaKnown RBP8.97□□□□□ -0.97
VCAN-212ENST00000515397 KRTAP10-11P60412 298 aa8.97□□□□□ -0.97
VCAN-212ENST00000515397 GNB1P62873 340 aa8.97□□□□□ -0.97
VCAN-212ENST00000515397 KIAA0141Q14154 515 aaPredicted RBP8.97□□□□□ -0.97
VCAN-212ENST00000515397 KPRPQ5T749 579 aaPredicted RBP8.97□□□□□ -0.97
VCAN-212ENST00000515397 COMMD1Q8N668 190 aa8.97□□□□□ -0.97
VCAN-212ENST00000515397 FLYWCH2Q96CP2 140 aaKnown RBP8.97□□□□□ -0.97
VCAN-212ENST00000515397 MS4A10Q96PG2 267 aa8.97□□□□□ -0.97
VCAN-212ENST00000515397 GPHA2Q96T91 129 aa8.97□□□□□ -0.97
VCAN-212ENST00000515397 GON7Q9BXV9 100 aa8.97□□□□□ -0.97
VCAN-212ENST00000515397 TOLLIPQ9H0E2 274 aa8.97□□□□□ -0.97
VCAN-212ENST00000515397 GHITMQ9H3K2 345 aa8.97□□□□□ -0.97
VCAN-212ENST00000515397 GNB4Q9HAV0 340 aa8.97□□□□□ -0.97
VCAN-212ENST00000515397 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.97□□□□□ -0.97
VCAN-212ENST00000515397 DNAH3Q8TD57 4116 aa8.97□□□□□ -0.97
VCAN-212ENST00000515397 IGKV1D-13A0A0B4J2D9 117 aa8.96□□□□□ -0.98
VCAN-212ENST00000515397 A0A1W2PN81 502 aa8.96□□□□□ -0.98
VCAN-212ENST00000515397 LINC00473A8K010 186 aa8.96□□□□□ -0.98
VCAN-212ENST00000515397 CA2P00918 260 aa8.96□□□□□ -0.98
VCAN-212ENST00000515397 APOA2P02652 100 aa8.96□□□□□ -0.98
VCAN-212ENST00000515397 IGKV1-13P0DP09 117 aa8.96□□□□□ -0.98
VCAN-212ENST00000515397 PSMB8P28062 276 aa8.96□□□□□ -0.98
VCAN-212ENST00000515397 CHRNA7P36544 502 aa8.96□□□□□ -0.98
VCAN-212ENST00000515397 VBP1P61758 197 aa8.96□□□□□ -0.98
VCAN-212ENST00000515397 NCS1P62166 190 aa8.96□□□□□ -0.98
VCAN-212ENST00000515397 OR2B11Q5JQS5 317 aa8.96□□□□□ -0.98
VCAN-212ENST00000515397 TMEM65Q6PI78 240 aa8.96□□□□□ -0.98
VCAN-212ENST00000515397 Q6ZS49 121 aa8.96□□□□□ -0.98
VCAN-212ENST00000515397 PPP1R27Q86WC6 154 aa8.96□□□□□ -0.98
VCAN-212ENST00000515397 LFNGQ8NES3 379 aa8.96□□□□□ -0.98
VCAN-212ENST00000515397 GRPEL2Q8TAA5 225 aa8.96□□□□□ -0.98
VCAN-212ENST00000515397 P2RX4Q99571 388 aa8.96□□□□□ -0.98
VCAN-212ENST00000515397 FUNDC2Q9BWH2 189 aa8.96□□□□□ -0.98
VCAN-212ENST00000515397 NAA50Q9GZZ1 169 aaKnown RBP8.96□□□□□ -0.98
VCAN-212ENST00000515397 ALX4Q9H161 411 aaPredicted RBP8.96□□□□□ -0.98
VCAN-212ENST00000515397 VCX3AQ9NNX9 186 aa8.96□□□□□ -0.98
VCAN-212ENST00000515397 AURKAIP1Q9NWT8 199 aaPredicted RBP8.96□□□□□ -0.98
VCAN-212ENST00000515397 ARPC1BO15143 372 aaKnown RBP8.95□□□□□ -0.98
VCAN-212ENST00000515397 TUSC2O75896 110 aa8.95□□□□□ -0.98
VCAN-212ENST00000515397 IGLV2-23P01705 113 aa8.95□□□□□ -0.98
VCAN-212ENST00000515397 APELAP0DMC3 54 aa8.95□□□□□ -0.98
VCAN-212ENST00000515397 DUTP33316 252 aaKnown RBP8.95□□□□□ -0.98
VCAN-212ENST00000515397 MYCNOSP40205 109 aa8.95□□□□□ -0.98
VCAN-212ENST00000515397 CDX1P47902 265 aaPredicted RBP8.95□□□□□ -0.98
VCAN-212ENST00000515397 RAB9AP51151 201 aa8.95□□□□□ -0.98
VCAN-212ENST00000515397 RPL30P62888 115 aaKnown RBP8.95□□□□□ -0.98
VCAN-212ENST00000515397 TAGLNQ01995 201 aaKnown RBP8.95□□□□□ -0.98
VCAN-212ENST00000515397 ARL6IP1Q15041 203 aa8.95□□□□□ -0.98
VCAN-212ENST00000515397 SRSF7Q16629 238 aaKnown RBP eCLIP8.95□□□□□ -0.98
VCAN-212ENST00000515397 ZNF660Q6AZW8 331 aaPredicted RBP8.95□□□□□ -0.98
VCAN-212ENST00000515397 UNQ5815/PRO19632Q6UWF5 114 aa8.95□□□□□ -0.98
VCAN-212ENST00000515397 IDO2Q6ZQW0 420 aa8.95□□□□□ -0.98
VCAN-212ENST00000515397 ZNF491Q8N8L2 437 aa8.95□□□□□ -0.98
VCAN-212ENST00000515397 RNF152Q8N8N0 203 aa8.95□□□□□ -0.98
VCAN-212ENST00000515397 MINDY2Q8NBR6 621 aa8.95□□□□□ -0.98
VCAN-212ENST00000515397 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.95□□□□□ -0.98
VCAN-212ENST00000515397 OR5T1Q8NG75 326 aa8.95□□□□□ -0.98
VCAN-212ENST00000515397 MRAPQ8TCY5 172 aa8.95□□□□□ -0.98
VCAN-212ENST00000515397 TSNAXQ99598 290 aaKnown RBP8.95□□□□□ -0.98
VCAN-212ENST00000515397 DCSTAMPQ9H295 470 aa8.95□□□□□ -0.98
VCAN-212ENST00000515397 AUNIPQ9H7T9 357 aa8.95□□□□□ -0.98
VCAN-212ENST00000515397 SPATA2Q9UM82 520 aa8.95□□□□□ -0.98
VCAN-212ENST00000515397 OR2W1Q9Y3N9 320 aa8.95□□□□□ -0.98
VCAN-212ENST00000515397 NUBP2Q9Y5Y2 271 aa8.95□□□□□ -0.98
VCAN-212ENST00000515397 ETV7Q9Y603 341 aa8.95□□□□□ -0.98
VCAN-212ENST00000515397 WI2-2373I1.2A0A1W2PRP0 233 aa8.94□□□□□ -0.98
VCAN-212ENST00000515397 SHOXO15266 292 aa8.94□□□□□ -0.98
VCAN-212ENST00000515397 RBBP9O75884 186 aa8.94□□□□□ -0.98
VCAN-212ENST00000515397 CNIH1O95406 144 aa8.94□□□□□ -0.98
VCAN-212ENST00000515397 CRYZL1O95825 349 aa8.94□□□□□ -0.98
VCAN-212ENST00000515397 IGLV1-40P01703 118 aa8.94□□□□□ -0.98
VCAN-212ENST00000515397 IGLV2-14P01704 120 aa8.94□□□□□ -0.98
VCAN-212ENST00000515397 IGHV3-11P01762 117 aa8.94□□□□□ -0.98
VCAN-212ENST00000515397 OR5H8P0DN80 308 aa8.94□□□□□ -0.98
VCAN-212ENST00000515397 LUMP51884 338 aaPredicted RBP8.94□□□□□ -0.98
VCAN-212ENST00000515397 SSBP2P81877 361 aaPredicted RBP8.94□□□□□ -0.98
VCAN-212ENST00000515397 PITPNAQ00169 270 aa8.94□□□□□ -0.98
VCAN-212ENST00000515397 DEFA5Q01523 94 aa8.94□□□□□ -0.98
VCAN-212ENST00000515397 FXYD3Q14802 87 aa8.94□□□□□ -0.98
VCAN-212ENST00000515397 TIMM50Q3ZCQ8 353 aa8.94□□□□□ -0.98
VCAN-212ENST00000515397 C19orf54Q5BKX5 351 aa8.94□□□□□ -0.98
VCAN-212ENST00000515397 CNIH2Q6PI25 160 aa8.94□□□□□ -0.98
VCAN-212ENST00000515397 ZNF562Q6V9R5 426 aa8.94□□□□□ -0.98
VCAN-212ENST00000515397 PDPNQ86YL7 162 aa8.94□□□□□ -0.98
VCAN-212ENST00000515397 SAMD12Q8N8I0 201 aa8.94□□□□□ -0.98
VCAN-212ENST00000515397 BEST4Q8NFU0 473 aa8.94□□□□□ -0.98
VCAN-212ENST00000515397 OR11H1Q8NG94 326 aa8.94□□□□□ -0.98
VCAN-212ENST00000515397 RCC1LQ96I51 464 aaKnown RBP8.94□□□□□ -0.98
VCAN-212ENST00000515397 HARBI1Q96MB7 349 aa8.94□□□□□ -0.98
VCAN-212ENST00000515397 RNF5Q99942 180 aa8.94□□□□□ -0.98
VCAN-212ENST00000515397 DCUN1D5Q9BTE7 237 aa8.94□□□□□ -0.98
VCAN-212ENST00000515397 DIABLOQ9NR28 239 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms