RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 IFT22Q9H7X7 185 aa12.49□□□□□ -0.41
VIM-208ENST00000497849 SLC17A2O00624 439 aa12.48□□□□□ -0.41
VIM-208ENST00000497849 CX3CL1P78423 397 aa12.48□□□□□ -0.41
VIM-208ENST00000497849 PLA2G7Q13093 441 aa12.48□□□□□ -0.41
VIM-208ENST00000497849 RAB11BQ15907 218 aa12.48□□□□□ -0.41
VIM-208ENST00000497849 FAM46BQ96A09 425 aa12.48□□□□□ -0.41
VIM-208ENST00000497849 MRPL20Q9BYC9 149 aaKnown RBP12.48□□□□□ -0.41
VIM-208ENST00000497849 SLIRPQ9GZT3 109 aaKnown RBP12.48□□□□□ -0.41
VIM-208ENST00000497849 RANGRFQ9HD47 186 aaPredicted RBP12.48□□□□□ -0.41
VIM-208ENST00000497849 GNG12Q9UBI6 72 aa12.48□□□□□ -0.41
VIM-208ENST00000497849 IFITM5A6NNB3 132 aa12.47□□□□□ -0.41
VIM-208ENST00000497849 FCN1O00602 326 aa12.47□□□□□ -0.41
VIM-208ENST00000497849 DEDDO75618 318 aa12.47□□□□□ -0.41
VIM-208ENST00000497849 CRTAPO75718 401 aaPredicted RBP12.47□□□□□ -0.41
VIM-208ENST00000497849 MT-ND4P03905 459 aa12.47□□□□□ -0.41
VIM-208ENST00000497849 CSTBP04080 98 aaKnown RBP12.47□□□□□ -0.41
VIM-208ENST00000497849 ZP3P21754 424 aa12.47□□□□□ -0.41
VIM-208ENST00000497849 C2orf76Q3KRA6 126 aa12.47□□□□□ -0.41
VIM-208ENST00000497849 ACTBL2Q562R1 376 aa12.47□□□□□ -0.41
VIM-208ENST00000497849 LCN12Q6JVE5 192 aa12.47□□□□□ -0.41
VIM-208ENST00000497849 ODF3L1Q8IXM7 274 aa12.47□□□□□ -0.41
VIM-208ENST00000497849 Q8N402 240 aa12.47□□□□□ -0.41
VIM-208ENST00000497849 OR6M1Q8NGM8 313 aa12.47□□□□□ -0.41
VIM-208ENST00000497849 MCFD2Q8NI22 146 aa12.47□□□□□ -0.41
VIM-208ENST00000497849 TSC22D3Q99576 134 aa12.47□□□□□ -0.41
VIM-208ENST00000497849 FAM103A1Q9BTL3 118 aaKnown RBP12.47□□□□□ -0.41
VIM-208ENST00000497849 ST3GAL6Q9Y274 331 aa12.47□□□□□ -0.41
VIM-208ENST00000497849 NOTOA8MTQ0 251 aa12.46□□□□□ -0.41
VIM-208ENST00000497849 OR7C1O76099 320 aaPredicted RBP12.46□□□□□ -0.41
VIM-208ENST00000497849 CSN3P07498 182 aa12.46□□□□□ -0.41
VIM-208ENST00000497849 PSMD7P51665 324 aa12.46□□□□□ -0.41
VIM-208ENST00000497849 CD81P60033 236 aa12.46□□□□□ -0.41
VIM-208ENST00000497849 QRFPP83859 136 aa12.46□□□□□ -0.41
VIM-208ENST00000497849 TMEM267Q0VDI3 215 aaPredicted RBP12.46□□□□□ -0.41
VIM-208ENST00000497849 PMS2P11Q13670 270 aa12.46□□□□□ -0.41
VIM-208ENST00000497849 STEAP3Q658P3 488 aa12.46□□□□□ -0.41
VIM-208ENST00000497849 ZNF497Q6ZNH5 498 aa12.46□□□□□ -0.41
VIM-208ENST00000497849 CROCCP3Q8IVE0 287 aa12.46□□□□□ -0.41
VIM-208ENST00000497849 AP3S1Q92572 193 aa12.46□□□□□ -0.41
VIM-208ENST00000497849 FAM3DQ96BQ1 224 aa12.46□□□□□ -0.41
VIM-208ENST00000497849 SELENOIQ9C0D9 397 aa12.46□□□□□ -0.41
VIM-208ENST00000497849 FBXL15Q9H469 300 aa12.46□□□□□ -0.41
VIM-208ENST00000497849 SLA2Q9H6Q3 261 aa12.46□□□□□ -0.41
VIM-208ENST00000497849 IL36GQ9NZH8 169 aa12.46□□□□□ -0.41
VIM-208ENST00000497849 STEAP1Q9UHE8 339 aa12.46□□□□□ -0.41
VIM-208ENST00000497849 DAPK2Q9UIK4 370 aa12.46□□□□□ -0.41
VIM-208ENST00000497849 ADAM30Q9UKF2 790 aa12.46□□□□□ -0.41
VIM-208ENST00000497849 GAB2Q9UQC2 676 aa12.46□□□□□ -0.41
VIM-208ENST00000497849 CXorf65A6NEN9 183 aa12.45□□□□□ -0.42
VIM-208ENST00000497849 AIPO00170 330 aa12.45□□□□□ -0.42
VIM-208ENST00000497849 GEMIN2O14893 280 aaKnown RBP12.45□□□□□ -0.42
VIM-208ENST00000497849 SNRPBP14678 240 aaKnown RBP12.45□□□□□ -0.42
VIM-208ENST00000497849 MGMTP16455 207 aa12.45□□□□□ -0.42
VIM-208ENST00000497849 MECP2P51608 486 aaKnown RBP12.45□□□□□ -0.42
VIM-208ENST00000497849 SYNJ2BPP57105 145 aa12.45□□□□□ -0.42
VIM-208ENST00000497849 UNC119Q13432 240 aa12.45□□□□□ -0.42
VIM-208ENST00000497849 AKIRIN2Q53H80 203 aa12.45□□□□□ -0.42
VIM-208ENST00000497849 NHLRC3Q5JS37 347 aa12.45□□□□□ -0.42
VIM-208ENST00000497849 IDNKQ5T6J7 187 aa12.45□□□□□ -0.42
VIM-208ENST00000497849 UNQ5815/PRO19632Q6UWF5 114 aa12.45□□□□□ -0.42
VIM-208ENST00000497849 PPP1R27Q86WC6 154 aa12.45□□□□□ -0.42
VIM-208ENST00000497849 DEFB125Q8N687 156 aa12.45□□□□□ -0.42
VIM-208ENST00000497849 OR1L1Q8NH94 360 aa12.45□□□□□ -0.42
VIM-208ENST00000497849 NXF2Q9GZY0 626 aaKnown RBP12.45□□□□□ -0.42
VIM-208ENST00000497849 WFDC10AQ9H1F0 79 aa12.45□□□□□ -0.42
VIM-208ENST00000497849 SIGLEC8Q9NYZ4 499 aa12.45□□□□□ -0.42
VIM-208ENST00000497849 A0A075B6Q4 140 aa12.44□□□□□ -0.42
VIM-208ENST00000497849 TMEM272A0A1B0GTI8 110 aa12.44□□□□□ -0.42
VIM-208ENST00000497849 NUPR2A6NF83 97 aa12.44□□□□□ -0.42
VIM-208ENST00000497849 TMEM14DPA8MWL7 114 aa12.44□□□□□ -0.42
VIM-208ENST00000497849 CNIH1O95406 144 aa12.44□□□□□ -0.42
VIM-208ENST00000497849 BPNT1O95861 308 aa12.44□□□□□ -0.42
VIM-208ENST00000497849 TRGV3P03979 118 aa12.44□□□□□ -0.42
VIM-208ENST00000497849 GTF2F2P13984 249 aa12.44□□□□□ -0.42
VIM-208ENST00000497849 RBM11P57052 281 aaKnown RBP12.44□□□□□ -0.42
VIM-208ENST00000497849 SFXN4Q6P4A7 337 aa12.44□□□□□ -0.42
VIM-208ENST00000497849 LFNGQ8NES3 379 aa12.44□□□□□ -0.42
VIM-208ENST00000497849 ABHD5Q8WTS1 349 aa12.44□□□□□ -0.42
VIM-208ENST00000497849 NEURL2Q9BR09 285 aa12.44□□□□□ -0.42
VIM-208ENST00000497849 C6orf62Q9GZU0 229 aaPredicted RBP12.44□□□□□ -0.42
VIM-208ENST00000497849 ETAA1Q9NY74 926 aa12.44□□□□□ -0.42
VIM-208ENST00000497849 RNF150Q9ULK6 438 aa12.44□□□□□ -0.42
VIM-208ENST00000497849 A0A0A6YYD4 124 aa12.43□□□□□ -0.42
VIM-208ENST00000497849 ANKRD34BA5PLL1 514 aa12.43□□□□□ -0.42
VIM-208ENST00000497849 RRHO14718 337 aa12.43□□□□□ -0.42
VIM-208ENST00000497849 SPINT2O43291 252 aa12.43□□□□□ -0.42
VIM-208ENST00000497849 ZNF780AO75290 641 aaPredicted RBP12.43□□□□□ -0.42
VIM-208ENST00000497849 TPPPO94811 219 aa12.43□□□□□ -0.42
VIM-208ENST00000497849 HBZP02008 142 aa12.43□□□□□ -0.42
VIM-208ENST00000497849 CD7P09564 240 aa12.43□□□□□ -0.42
VIM-208ENST00000497849 UBBP0CG47 229 aa12.43□□□□□ -0.42
VIM-208ENST00000497849 EWSR1Q01844 656 aaKnown RBP eCLIP12.43□□□□□ -0.42
VIM-208ENST00000497849 GPR176Q14439 515 aa12.43□□□□□ -0.42
VIM-208ENST00000497849 TMEM30BQ3MIR4 351 aa12.43□□□□□ -0.42
VIM-208ENST00000497849 MORN2Q502X0 79 aa12.43□□□□□ -0.42
VIM-208ENST00000497849 ATAD3CQ5T2N8 411 aa12.43□□□□□ -0.42
VIM-208ENST00000497849 MZT2AQ6P582 158 aa12.43□□□□□ -0.42
VIM-208ENST00000497849 ZNF833PQ6ZTB9 187 aa12.43□□□□□ -0.42
VIM-208ENST00000497849 PRR18Q8N4B5 295 aa12.43□□□□□ -0.42
VIM-208ENST00000497849 OR5H6Q8NGV6 325 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms