RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 GPM6AP51674 278 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 RIPPLY3P57055 190 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 TFF2Q03403 129 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 ZNF114Q8NC26 417 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 ST6GALNAC6Q969X2 333 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 CLCF1Q9UBD9 225 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 IL19Q9UHD0 177 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 MRPS16Q9Y3D3 137 aaKnown RBP5.3□□□□□ -1.56
VPS13D-209ENST00000487188 TIMM8BQ9Y5J9 83 aaPredicted RBP5.3□□□□□ -1.56
VPS13D-209ENST00000487188 CPAMD8Q8IZJ3 1885 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 YPEL1O60688 119 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 PPBPP02775 128 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 TNFRSF4P43489 277 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 RELBQ01201 579 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 HLA-BQ31612 363 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 TIGITQ495A1 244 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 KRTCAP3Q53RY4 240 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 ZNF324BQ6AW86 544 aaPredicted RBP5.3□□□□□ -1.56
VPS13D-209ENST00000487188 SAXO1Q8IYX7 474 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 ZNF808Q8N4W9 903 aaPredicted RBP5.3□□□□□ -1.56
VPS13D-209ENST00000487188 OR2M3Q8NG83 312 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 OR10G3Q8NGC4 313 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 OR5P3Q8WZ94 311 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 ZNF501Q96CX3 271 aaPredicted RBP5.3□□□□□ -1.56
VPS13D-209ENST00000487188 YPEL2Q96QA6 119 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 IL36GQ9NZH8 169 aa5.3□□□□□ -1.56
VPS13D-209ENST00000487188 LOC105371242A0A075B767 164 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 TMPRSS2O15393 492 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 RBFOX2O43251 390 aaKnown RBP eCLIP5.29□□□□□ -1.565e-8■□□□□ 8.9
VPS13D-209ENST00000487188 MMP23AO75900 390 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 APOA2P02652 100 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 PLA2G5P39877 138 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 ZXDAP98168 799 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 Q0VG73 95 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 CATR1Q13166 79 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 COX19Q49B96 90 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 LCN12Q6JVE5 192 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 OCC1Q8TAD7 63 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 BADQ92934 168 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 PLEKHA3Q9HB20 300 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 OBP2AQ9NY56 170 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 C19orf25Q9UFG5 118 aaPredicted RBP5.29□□□□□ -1.56
VPS13D-209ENST00000487188 SDK1Q7Z5N4 2213 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 PIAS2O75928 621 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 IGLV3-1P01715 115 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 ARL14EPLP0DKL9 152 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 EPHA8P29322 1005 aaPredicted RBP5.29□□□□□ -1.56
VPS13D-209ENST00000487188 GNG4P50150 75 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 PRRX1P54821 245 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 HIST3H3Q16695 136 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 H2BFWTQ7Z2G1 175 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 TDHQ8IZJ6 230 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 PNKDQ8N490 385 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 NINJ1Q92982 152 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 MRGPRX1Q96LB2 322 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 DEFB126Q9BYW3 111 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 MEGF9Q9H1U4 602 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 CTNNBIP1Q9NSA3 81 aaPredicted RBP5.29□□□□□ -1.56
VPS13D-209ENST00000487188 ZNF391Q9UJN7 358 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 HS3ST3A1Q9Y663 406 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 TRAV9-2A0A087WT02 112 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 A0A1B0GX78 115 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 ZNF891A8MT65 544 aaPredicted RBP5.29□□□□□ -1.56
VPS13D-209ENST00000487188 TMEM238C9JI98 176 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 FAM90A26D6RGX4 464 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 RAB29O14966 203 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 EFNA2O43921 213 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 VAMP5O95183 116 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 IGKV1-5P01602 117 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 SPINK2P20155 84 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 USF1P22415 310 aaPredicted RBP5.29□□□□□ -1.56
VPS13D-209ENST00000487188 KIR2DL1P43626 348 aaPredicted RBP5.29□□□□□ -1.56
VPS13D-209ENST00000487188 DUSP3P51452 185 aaPredicted RBP5.29□□□□□ -1.56
VPS13D-209ENST00000487188 PCBD1P61457 104 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 RHBDD2Q6NTF9 364 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 KMT5CQ86Y97 462 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 TXNDC17Q9BRA2 123 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 PLA2G2FQ9BZM2 168 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 OR1A1Q9P1Q5 309 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 TP53TG3Q9ULZ0 132 aa5.29□□□□□ -1.56
VPS13D-209ENST00000487188 ESPL1Q14674 2120 aa5.28□□□□□ -1.56
VPS13D-209ENST00000487188 TRIOBPQ9H2D6 2365 aa5.28□□□□□ -1.56
VPS13D-209ENST00000487188 ODAMA1E959 279 aa5.28□□□□□ -1.56
VPS13D-209ENST00000487188 FAM90A10PA6NDY2 464 aa5.28□□□□□ -1.56
VPS13D-209ENST00000487188 FAM90A18PA6NE21 464 aa5.28□□□□□ -1.56
VPS13D-209ENST00000487188 FAM90A16PA6NEW6 464 aa5.28□□□□□ -1.56
VPS13D-209ENST00000487188 FAM90A20PA6NIJ5 464 aa5.28□□□□□ -1.56
VPS13D-209ENST00000487188 FAM90A8PA6NJQ4 464 aa5.28□□□□□ -1.56
VPS13D-209ENST00000487188 FAM90A7PA6NKC0 464 aa5.28□□□□□ -1.56
VPS13D-209ENST00000487188 FAM90A22PA8MWA6 464 aa5.28□□□□□ -1.56
VPS13D-209ENST00000487188 FAM90A12PA8MX19 464 aa5.28□□□□□ -1.56
VPS13D-209ENST00000487188 FAM90A5PA8MXJ8 464 aa5.28□□□□□ -1.56
VPS13D-209ENST00000487188 FAM90A23PA8MXZ1 464 aa5.28□□□□□ -1.56
VPS13D-209ENST00000487188 CA2P00918 260 aa5.28□□□□□ -1.56
VPS13D-209ENST00000487188 HLA-DQA1P01909 254 aa5.28□□□□□ -1.56
VPS13D-209ENST00000487188 APCSP02743 223 aa5.28□□□□□ -1.56
VPS13D-209ENST00000487188 WNT2P09544 360 aa5.28□□□□□ -1.56
VPS13D-209ENST00000487188 FAM90A15PP0C7V4 464 aa5.28□□□□□ -1.56
VPS13D-209ENST00000487188 FAM90A13PP0C7W8 464 aa5.28□□□□□ -1.56
VPS13D-209ENST00000487188 FAM90A14PP0C7W9 464 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms