RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 FLYWCH2Q96CP2 140 aaKnown RBP6.64□□□□□ -1.35
SF3A1-208ENST00000485618 PRRT1Q99946 306 aa6.64□□□□□ -1.35
SF3A1-208ENST00000485618 RASL11BQ9BPW5 248 aa6.64□□□□□ -1.35
SF3A1-208ENST00000485618 ZNF2Q9BSG1 426 aaPredicted RBP6.64□□□□□ -1.35
SF3A1-208ENST00000485618 SLC25A33Q9BSK2 321 aa6.64□□□□□ -1.35
SF3A1-208ENST00000485618 THAP7Q9BT49 309 aaPredicted RBP6.64□□□□□ -1.35
SF3A1-208ENST00000485618 SLC5A7Q9GZV3 580 aa6.64□□□□□ -1.35
SF3A1-208ENST00000485618 KLK11Q9UBX7 282 aa6.64□□□□□ -1.35
SF3A1-208ENST00000485618 MOB4Q9Y3A3 225 aa6.64□□□□□ -1.35
SF3A1-208ENST00000485618 IGKV1D-8A0A087WSZ0 117 aa6.63□□□□□ -1.35
SF3A1-208ENST00000485618 PIGBOS1A0A0B4J2F0 54 aa6.63□□□□□ -1.35
SF3A1-208ENST00000485618 TMEM89A2RUT3 159 aa6.63□□□□□ -1.35
SF3A1-208ENST00000485618 J3QRK9 145 aa6.63□□□□□ -1.35
SF3A1-208ENST00000485618 CREBL2O60519 120 aaPredicted RBP6.63□□□□□ -1.35
SF3A1-208ENST00000485618 AADACP22760 399 aa6.63□□□□□ -1.35
SF3A1-208ENST00000485618 FXYD4P59646 89 aa6.63□□□□□ -1.35
SF3A1-208ENST00000485618 EBI3Q14213 229 aa6.63□□□□□ -1.35
SF3A1-208ENST00000485618 ABCA11PQ4W5N1 156 aa6.63□□□□□ -1.35
SF3A1-208ENST00000485618 RPL39P5Q59GN2 51 aa6.63□□□□□ -1.35
SF3A1-208ENST00000485618 LDLRAD2Q5SZI1 272 aa6.63□□□□□ -1.35
SF3A1-208ENST00000485618 TRIQKQ629K1 86 aa6.63□□□□□ -1.35
SF3A1-208ENST00000485618 FAM53AQ6NSI3 398 aaPredicted RBP6.63□□□□□ -1.35
SF3A1-208ENST00000485618 C5orf24Q7Z6I8 188 aa6.63□□□□□ -1.35
SF3A1-208ENST00000485618 CCDC190Q86UF4 302 aa6.63□□□□□ -1.35
SF3A1-208ENST00000485618 TMEM219Q86XT9 240 aa6.63□□□□□ -1.35
SF3A1-208ENST00000485618 ODF3L1Q8IXM7 274 aa6.63□□□□□ -1.35
SF3A1-208ENST00000485618 SLC38A6Q8IZM9 456 aa6.63□□□□□ -1.35
SF3A1-208ENST00000485618 TOMM5Q8N4H5 51 aa6.63□□□□□ -1.35
SF3A1-208ENST00000485618 TCTEX1D1Q8N7M0 179 aa6.63□□□□□ -1.35
SF3A1-208ENST00000485618 C3orf56Q8N813 242 aa6.63□□□□□ -1.35
SF3A1-208ENST00000485618 OR5AN1Q8NGI8 311 aa6.63□□□□□ -1.35
SF3A1-208ENST00000485618 MOB3AQ96BX8 217 aa6.63□□□□□ -1.35
SF3A1-208ENST00000485618 EAF1Q96JC9 268 aaPredicted RBP6.63□□□□□ -1.35
SF3A1-208ENST00000485618 NABP2Q9BQ15 211 aa6.63□□□□□ -1.35
SF3A1-208ENST00000485618 SOSTQ9BQB4 213 aa6.63□□□□□ -1.35
SF3A1-208ENST00000485618 GON7Q9BXV9 100 aa6.63□□□□□ -1.35
SF3A1-208ENST00000485618 MRPL20Q9BYC9 149 aaKnown RBP6.63□□□□□ -1.35
SF3A1-208ENST00000485618 SDHAF2Q9NX18 166 aa6.63□□□□□ -1.35
SF3A1-208ENST00000485618 PTTG2Q9NZH5 202 aa6.63□□□□□ -1.35
SF3A1-208ENST00000485618 RBMX2Q9Y388 322 aaKnown RBP6.63□□□□□ -1.35
SF3A1-208ENST00000485618 IGHV3-72A0A0B4J1Y9 119 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 CLPSL1A2RUU4 121 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 H0YJW9 148 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 GPR31O00270 319 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 KCNAB3O43448 404 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 TSPAN9O75954 239 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 ATG12O94817 140 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 SPDEFO95238 335 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 HRASP01112 189 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 CD74P04233 296 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 CD3DP04234 171 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 AMY2AP04746 511 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 CT45A6P0DMU7 189 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 CT45A5P0DMU8 189 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 CT45A7P0DMV0 189 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 PGAM2P15259 253 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 CD24P25063 80 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 PAX6P26367 422 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 UCP3P55916 312 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 RPS16P62249 146 aaKnown RBP6.62□□□□□ -1.35
SF3A1-208ENST00000485618 DGCR2P98153 550 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 DIAPH2-AS1Q14236 149 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 PLGLAQ15195 96 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 CNPY1Q3B7I2 92 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 SCGB2B2Q4G0G5 96 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 RNASE12Q5GAN4 147 aaKnown RBP6.62□□□□□ -1.35
SF3A1-208ENST00000485618 UTF1Q5T230 341 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 KCTD9Q7L273 389 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 FOXRED2Q8IWF2 684 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 CCDC71LQ8N9Z2 235 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 OR4S2Q8NH73 311 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 TERB2Q8NHR7 220 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 OSR1Q8TAX0 266 aaPredicted RBP6.62□□□□□ -1.35
SF3A1-208ENST00000485618 TCTEX1D2Q8WW35 142 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 CFHR4Q92496 578 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 ZNF486Q96H40 463 aaPredicted RBP6.62□□□□□ -1.35
SF3A1-208ENST00000485618 CYYR1Q96J86 154 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 PARP12Q9H0J9 701 aaKnown RBP6.62□□□□□ -1.35
SF3A1-208ENST00000485618 C16orf95Q9H693 158 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 SLC35D1Q9NTN3 355 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 MMP24Q9Y5R2 645 aa6.62□□□□□ -1.35
SF3A1-208ENST00000485618 MEGF8Q7Z7M0 2845 aa6.61□□□□□ -1.35
SF3A1-208ENST00000485618 ANKRD20A5PA0PJZ0 165 aa6.61□□□□□ -1.35
SF3A1-208ENST00000485618 NAP1L6A6NFF2 107 aa6.61□□□□□ -1.35
SF3A1-208ENST00000485618 M0QYG6 137 aa6.61□□□□□ -1.35
SF3A1-208ENST00000485618 SHOXO15266 292 aa6.61□□□□□ -1.35
SF3A1-208ENST00000485618 NBR2O15453 112 aa6.61□□□□□ -1.35
SF3A1-208ENST00000485618 RBFOX2O43251 390 aaKnown RBP eCLIP6.61□□□□□ -1.35
SF3A1-208ENST00000485618 B3GALNT1O75752 331 aa6.61□□□□□ -1.35
SF3A1-208ENST00000485618 ACTL6BO94805 426 aa6.61□□□□□ -1.35
SF3A1-208ENST00000485618 DUTP33316 252 aaKnown RBP6.61□□□□□ -1.35
SF3A1-208ENST00000485618 COMPP49747 757 aaPredicted RBP6.61□□□□□ -1.35
SF3A1-208ENST00000485618 SURF2Q15527 256 aaPredicted RBP6.61□□□□□ -1.35
SF3A1-208ENST00000485618 MMDQ15546 238 aa6.61□□□□□ -1.35
SF3A1-208ENST00000485618 VMA21Q3ZAQ7 101 aa6.61□□□□□ -1.35
SF3A1-208ENST00000485618 C9orf152Q5JTZ5 239 aa6.61□□□□□ -1.35
SF3A1-208ENST00000485618 FOXB2Q5VYV0 432 aa6.61□□□□□ -1.35
SF3A1-208ENST00000485618 ZNF57Q68EA5 555 aaPredicted RBP6.61□□□□□ -1.35
SF3A1-208ENST00000485618 LIN54Q6MZP7 749 aa6.61□□□□□ -1.35
SF3A1-208ENST00000485618 MFSD4AQ8N468 514 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms