RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 MRGPRG-AS1Q2M3A8 158 aa9.4□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 C2orf76Q3KRA6 126 aa9.4□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 UNQ5815/PRO19632Q6UWF5 114 aa9.4□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 ZNF367Q7RTV3 350 aa9.4□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.4□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 SETD6Q8TBK2 473 aa9.4□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 ARPC1AQ92747 370 aa9.4□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 TSNAXQ99598 290 aaKnown RBP9.4□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 MGLLQ99685 303 aa9.4□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 C12orf4Q9NQ89 552 aa9.4□□□□□ -0.9
MSH5-SAPCD1-205ENST00000476085 TRIM64CA6NLI5 447 aa9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 A8MZ25 164 aa9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 TRDCB7Z8K6 153 aa9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 H3BUA1 57 aa9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 ARL6IP5O75915 188 aa9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 DIRAS3O95661 229 aa9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 LY86O95711 162 aa9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 IGLV1-51P01701 117 aa9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 IGHV3-11P01762 117 aa9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 FRMD6-AS1P0C7T7 363 aa9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 RPS16P62249 146 aaKnown RBP9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 FABP5Q01469 135 aa9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 PLA2G7Q13093 441 aa9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 PLGLAQ15195 96 aa9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 CASC10Q5T4H9 136 aa9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 IL34Q6ZMJ4 242 aa9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 PDPNQ86YL7 162 aa9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 OR4A4PQ8NGN8 299 aa9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 OR6Q1Q8NGQ2 317 aa9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 FCGR1BQ92637 280 aa9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 FAM3DQ96BQ1 224 aa9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 FLYWCH2Q96CP2 140 aaKnown RBP9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 C5orf30Q96GV9 206 aa9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 MS4A10Q96PG2 267 aa9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 RCHY1Q96PM5 261 aa9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 CLCC1Q96S66 551 aa9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 CMSS1Q9BQ75 279 aaKnown RBP9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 ACOT13Q9NPJ3 140 aa9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 C19orf73Q9NVV2 129 aa9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 RDH8Q9NYR8 311 aa9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 A3GALT2U3KPV4 340 aa9.39□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 DYNC2H1Q8NCM8 4307 aaKnown RBP9.38□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 SRRM4A7MD48 611 aaKnown RBP9.38□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 HSPA12AO43301 675 aa9.38□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 LGALS7P47929 136 aa9.38□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 CLDN12P56749 244 aa9.38□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 TPPP2P59282 170 aa9.38□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 PJVKQ0ZLH3 352 aa9.38□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 KLF5Q13887 457 aaPredicted RBP9.38□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 FXYD3Q14802 87 aa9.38□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 RAB11BQ15907 218 aa9.38□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 OVCH2Q7RTZ1 564 aa9.38□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 OR56B1Q8NGI3 324 aa9.38□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 MUC7Q8TAX7 377 aa9.38□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 TM2D3Q9BRN9 247 aa9.38□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 CABLES2Q9BTV7 478 aa9.38□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 PLGRKTQ9HBL7 147 aa9.38□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 ZNF221Q9UK13 617 aa9.38□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 TRBV6-7A0A0A0MS04 114 aa9.37□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 TMEM272A0A1B0GTI8 110 aa9.37□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 SHISA3A0PJX4 238 aa9.37□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 RAB27BO00194 218 aa9.37□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 SLC25A17O43808 307 aa9.37□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 CD3GP09693 182 aa9.37□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 MAP2K4P45985 399 aa9.37□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 SERPINB10P48595 397 aa9.37□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 MOGAT2Q3SYC2 334 aa9.37□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 TMEM177Q53S58 311 aa9.37□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 IGSF11Q5DX21 431 aa9.37□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 POC5Q8NA72 575 aa9.37□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 TMEM68Q96MH6 324 aa9.37□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 RANGRFQ9HD47 186 aaPredicted RBP9.37□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 SDHAF2Q9NX18 166 aa9.37□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 RAB22AQ9UL26 194 aa9.37□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 V9GY05 133 aa9.37□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 TRAV1-2A0A0B4J238 106 aa9.36□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 FABP7O15540 132 aa9.36□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 RBMXL2O75526 392 aaKnown RBP9.36□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 APOA2P02652 100 aa9.36□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 TRGV3P03979 118 aa9.36□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 FCGR3AP08637 254 aa9.36□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 GALP22466 123 aa9.36□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 CALRP27797 417 aaKnown RBP9.36□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 MECP2P51608 486 aaKnown RBP9.36□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 PSMD7P51665 324 aa9.36□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 PITPNAQ00169 270 aa9.36□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 TAGLNQ01995 201 aaKnown RBP9.36□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 SRSF7Q16629 238 aaKnown RBP eCLIP9.36□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 UBE2UQ5VVX9 321 aa9.36□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 ZNF343Q6P1L6 599 aa9.36□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 Q6ZS49 121 aa9.36□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 SPARTQ8N0X7 666 aa9.36□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 OR5T1Q8NG75 326 aa9.36□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 ABHD5Q8WTS1 349 aa9.36□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 DDB2Q92466 427 aa9.36□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 OR4C12Q96R67 309 aa9.36□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 CITED4Q96RK1 184 aa9.36□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 THAP7Q9BT49 309 aaPredicted RBP9.36□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 SLC35D1Q9NTN3 355 aa9.36□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 STUB1Q9UNE7 303 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms