RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 OR8U9P0C7N5 309 aa12.88□□□□□ -0.35
USP40-212ENST00000473191 RPS16P62249 146 aaKnown RBP12.88□□□□□ -0.35
USP40-212ENST00000473191 PJVKQ0ZLH3 352 aa12.88□□□□□ -0.35
USP40-212ENST00000473191 UNQ5815/PRO19632Q6UWF5 114 aa12.88□□□□□ -0.35
USP40-212ENST00000473191 PPP1R27Q86WC6 154 aa12.88□□□□□ -0.35
USP40-212ENST00000473191 OR10R2Q8NGX6 335 aa12.88□□□□□ -0.35
USP40-212ENST00000473191 ASCL2Q99929 193 aa12.88□□□□□ -0.35
USP40-212ENST00000473191 OR2D2Q9H210 308 aa12.88□□□□□ -0.35
USP40-212ENST00000473191 ZNF221Q9UK13 617 aa12.88□□□□□ -0.35
USP40-212ENST00000473191 MGAT4AQ9UM21 535 aa12.88□□□□□ -0.35
USP40-212ENST00000473191 TRDV1A0A1B0GX56 115 aa12.87□□□□□ -0.35
USP40-212ENST00000473191 TFAP2AP05549 437 aa12.87□□□□□ -0.35
USP40-212ENST00000473191 HIST1H1DP16402 221 aaKnown RBP12.87□□□□□ -0.35
USP40-212ENST00000473191 DEFA5Q01523 94 aa12.87□□□□□ -0.35
USP40-212ENST00000473191 OR4A4PQ8NGN8 299 aa12.87□□□□□ -0.35
USP40-212ENST00000473191 CABLES2Q9BTV7 478 aa12.87□□□□□ -0.35
USP40-212ENST00000473191 VCX3BQ9H321 246 aa12.87□□□□□ -0.35
USP40-212ENST00000473191 RAB26Q9ULW5 256 aa12.87□□□□□ -0.35
USP40-212ENST00000473191 TRBV6-7A0A0A0MS04 114 aa12.86□□□□□ -0.35
USP40-212ENST00000473191 SRRM4A7MD48 611 aaKnown RBP12.86□□□□□ -0.35
USP40-212ENST00000473191 RBBP9O75884 186 aa12.86□□□□□ -0.35
USP40-212ENST00000473191 CRYGBP07316 175 aa12.86□□□□□ -0.35
USP40-212ENST00000473191 RAB3BP20337 219 aa12.86□□□□□ -0.35
USP40-212ENST00000473191 MRGPRG-AS1Q2M3A8 158 aa12.86□□□□□ -0.35
USP40-212ENST00000473191 ACTBL2Q562R1 376 aa12.86□□□□□ -0.35
USP40-212ENST00000473191 ZNF562Q6V9R5 426 aa12.86□□□□□ -0.35
USP40-212ENST00000473191 GRPEL2Q8TAA5 225 aa12.86□□□□□ -0.35
USP40-212ENST00000473191 RNF5Q99942 180 aa12.86□□□□□ -0.35
USP40-212ENST00000473191 GHITMQ9H3K2 345 aa12.86□□□□□ -0.35
USP40-212ENST00000473191 SLC35D1Q9NTN3 355 aa12.86□□□□□ -0.35
USP40-212ENST00000473191 ZNF256Q9Y2P7 627 aaPredicted RBP12.86□□□□□ -0.35
USP40-212ENST00000473191 J3QRK9 145 aa12.85□□□□□ -0.35
USP40-212ENST00000473191 PDCD5O14737 125 aa12.85□□□□□ -0.35
USP40-212ENST00000473191 OVOL1O14753 267 aa12.85□□□□□ -0.35
USP40-212ENST00000473191 ATP6V1G2O95670 118 aa12.85□□□□□ -0.35
USP40-212ENST00000473191 LGALS1P09382 135 aaKnown RBP12.85□□□□□ -0.35
USP40-212ENST00000473191 MYL9P24844 172 aa12.85□□□□□ -0.35
USP40-212ENST00000473191 HSPA13P48723 471 aa12.85□□□□□ -0.35
USP40-212ENST00000473191 PSMD7P51665 324 aa12.85□□□□□ -0.35
USP40-212ENST00000473191 TPPP2P59282 170 aa12.85□□□□□ -0.35
USP40-212ENST00000473191 FXYD3Q14802 87 aa12.85□□□□□ -0.35
USP40-212ENST00000473191 HAPLN4Q86UW8 402 aa12.85□□□□□ -0.35
USP40-212ENST00000473191 PDPNQ86YL7 162 aa12.85□□□□□ -0.35
USP40-212ENST00000473191 SPARTQ8N0X7 666 aa12.85□□□□□ -0.35
USP40-212ENST00000473191 ARPC1AQ92747 370 aa12.85□□□□□ -0.35
USP40-212ENST00000473191 FLYWCH2Q96CP2 140 aaKnown RBP12.85□□□□□ -0.35
USP40-212ENST00000473191 RYR3Q15413 4870 aa12.84□□□□□ -0.35
USP40-212ENST00000473191 LINC01619G3V211 115 aa12.84□□□□□ -0.35
USP40-212ENST00000473191 APELAP0DMC3 54 aa12.84□□□□□ -0.35
USP40-212ENST00000473191 RAB6AP20340 208 aa12.84□□□□□ -0.35
USP40-212ENST00000473191 AKIRIN2Q53H80 203 aa12.84□□□□□ -0.35
USP40-212ENST00000473191 UBE2UQ5VVX9 321 aa12.84□□□□□ -0.35
USP40-212ENST00000473191 BVESQ8NE79 360 aa12.84□□□□□ -0.35
USP40-212ENST00000473191 OR5T1Q8NG75 326 aa12.84□□□□□ -0.35
USP40-212ENST00000473191 OR10J5Q8NHC4 309 aa12.84□□□□□ -0.35
USP40-212ENST00000473191 RHOVQ96L33 236 aa12.84□□□□□ -0.35
USP40-212ENST00000473191 TSNAXQ99598 290 aaKnown RBP12.84□□□□□ -0.35
USP40-212ENST00000473191 RNF167Q9H6Y7 350 aa12.84□□□□□ -0.35
USP40-212ENST00000473191 TXNL4BQ9NX01 149 aaKnown RBP12.84□□□□□ -0.35
USP40-212ENST00000473191 BLOC1S6Q9UL45 172 aa12.84□□□□□ -0.35
USP40-212ENST00000473191 LINC00473A8K010 186 aa12.83□□□□□ -0.36
USP40-212ENST00000473191 SAP30O75446 220 aa12.83□□□□□ -0.36
USP40-212ENST00000473191 RBMXL2O75526 392 aaKnown RBP12.83□□□□□ -0.36
USP40-212ENST00000473191 SPDEFO95238 335 aa12.83□□□□□ -0.36
USP40-212ENST00000473191 LY86O95711 162 aa12.83□□□□□ -0.36
USP40-212ENST00000473191 APOA2P02652 100 aa12.83□□□□□ -0.36
USP40-212ENST00000473191 PSMB9P28065 219 aa12.83□□□□□ -0.36
USP40-212ENST00000473191 SERPINB10P48595 397 aa12.83□□□□□ -0.36
USP40-212ENST00000473191 GABARAPL2P60520 117 aa12.83□□□□□ -0.36
USP40-212ENST00000473191 MRPS15P82914 257 aaKnown RBP12.83□□□□□ -0.36
USP40-212ENST00000473191 TMEM267Q0VDI3 215 aaPredicted RBP12.83□□□□□ -0.36
USP40-212ENST00000473191 TCTEX1D1Q8N7M0 179 aa12.83□□□□□ -0.36
USP40-212ENST00000473191 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.83□□□□□ -0.36
USP40-212ENST00000473191 ATG5Q9H1Y0 275 aa12.83□□□□□ -0.36
USP40-212ENST00000473191 TRGV3P03979 118 aa12.82□□□□□ -0.36
USP40-212ENST00000473191 SPNP16150 400 aa12.82□□□□□ -0.36
USP40-212ENST00000473191 ARFRP1Q13795 201 aa12.82□□□□□ -0.36
USP40-212ENST00000473191 IDO2Q6ZQW0 420 aa12.82□□□□□ -0.36
USP40-212ENST00000473191 H1FOOQ8IZA3 346 aaPredicted RBP12.82□□□□□ -0.36
USP40-212ENST00000473191 DDB2Q92466 427 aa12.82□□□□□ -0.36
USP40-212ENST00000473191 HARBI1Q96MB7 349 aa12.82□□□□□ -0.36
USP40-212ENST00000473191 OR51E2Q9H255 320 aa12.82□□□□□ -0.36
USP40-212ENST00000473191 ZMAT5Q9UDW3 170 aaKnown RBP12.82□□□□□ -0.36
USP40-212ENST00000473191 HSPB1P04792 205 aaKnown RBP12.81□□□□□ -0.36
USP40-212ENST00000473191 CLEC2LP0C7M8 214 aa12.81□□□□□ -0.36
USP40-212ENST00000473191 GADD45AP24522 165 aa12.81□□□□□ -0.36
USP40-212ENST00000473191 CDNFQ49AH0 187 aa12.81□□□□□ -0.36
USP40-212ENST00000473191 ACSM6Q6P461 480 aa12.81□□□□□ -0.36
USP40-212ENST00000473191 WWC2-AS2Q96NR7 200 aa12.81□□□□□ -0.36
USP40-212ENST00000473191 ZNF355PQ9NSJ1 428 aa12.81□□□□□ -0.36
USP40-212ENST00000473191 ADAM30Q9UKF2 790 aa12.81□□□□□ -0.36
USP40-212ENST00000473191 TMEM235A6NFC5 223 aa12.8□□□□□ -0.36
USP40-212ENST00000473191 SHOXO15266 292 aa12.8□□□□□ -0.36
USP40-212ENST00000473191 CNIH1O95406 144 aa12.8□□□□□ -0.36
USP40-212ENST00000473191 IGLV2-14P01704 120 aa12.8□□□□□ -0.36
USP40-212ENST00000473191 TRBV12-3P01733 135 aa12.8□□□□□ -0.36
USP40-212ENST00000473191 GALP22466 123 aa12.8□□□□□ -0.36
USP40-212ENST00000473191 NFYAP23511 347 aaPredicted RBP12.8□□□□□ -0.36
USP40-212ENST00000473191 DUTP33316 252 aaKnown RBP12.8□□□□□ -0.36
USP40-212ENST00000473191 INSL3P51460 131 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms